Wall clock time and date at job start Fri Apr 10 2020 18:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00144 * 2 1 4 4 C 1.53044 * 109.51335 * 185.83239 * 3 2 1 5 5 C 1.53117 * 109.27792 * 300.82256 * 4 3 2 6 6 C 1.53000 * 109.52114 * 177.56078 * 5 4 3 7 7 H 1.08999 * 110.32820 * 60.79779 * 6 5 4 8 8 O 1.44418 * 110.37134 * 298.54396 * 6 5 4 9 9 C 1.44423 * 105.27565 * 200.65448 * 8 6 5 10 10 C 1.54481 * 104.80198 * 40.51807 * 9 8 6 11 11 C 1.54480 * 110.36958 * 183.16491 * 6 5 4 12 12 H 1.09000 * 110.51311 * 24.17153 * 11 6 5 13 13 C 1.50693 * 110.51253 * 261.45575 * 11 6 5 14 14 O 1.21280 * 119.99936 * 0.02562 * 13 11 6 15 15 N 1.34782 * 120.00296 * 180.02562 * 13 11 6 16 16 C 1.46495 * 120.00277 * 179.97438 * 15 13 11 17 17 C 1.53002 * 109.47257 * 179.97438 * 16 15 13 18 18 N 1.46495 * 109.47257 * 179.97438 * 17 16 15 19 19 C 1.36932 * 119.99942 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00147 * 0.02562 * 19 18 17 21 21 C 1.38821 * 120.00002 * 179.97438 * 19 18 17 22 22 N 1.31611 * 119.99875 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99977 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47336 * 90.00077 * 23 21 19 25 25 H 1.48499 * 109.46914 * 210.00436 * 23 21 19 26 26 H 1.48504 * 109.47127 * 330.00030 * 23 21 19 27 27 C 1.53127 * 109.15989 * 57.65607 * 5 4 3 28 28 C 1.46830 * 110.98168 * 124.21418 * 2 1 3 29 29 H 1.09003 * 109.46681 * 60.00277 * 1 2 3 30 30 H 1.09002 * 109.47278 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47129 * 300.00662 * 1 2 3 32 32 H 1.09002 * 109.46448 * 65.81961 * 3 2 1 33 33 H 1.08994 * 109.45958 * 305.84326 * 3 2 1 34 34 H 1.09001 * 109.49858 * 60.76701 * 4 3 2 35 35 H 1.09000 * 109.49965 * 180.88251 * 4 3 2 36 36 H 1.09004 * 109.52347 * 297.75632 * 5 4 3 37 37 H 1.09001 * 110.37307 * 159.34210 * 9 8 6 38 38 H 1.08994 * 110.37419 * 281.68624 * 9 8 6 39 39 H 1.09002 * 110.51258 * 94.66003 * 10 9 8 40 40 H 1.09000 * 110.51202 * 217.23935 * 10 9 8 41 41 H 0.97001 * 119.99718 * 359.97438 * 15 13 11 42 42 H 1.09001 * 109.47070 * 299.99478 * 16 15 13 43 43 H 1.08999 * 109.47132 * 59.99724 * 16 15 13 44 44 H 1.09001 * 109.46710 * 299.99767 * 17 16 15 45 45 H 1.08999 * 109.47220 * 59.99845 * 17 16 15 46 46 H 0.97001 * 120.00005 * 359.97438 * 18 17 16 47 47 H 0.97000 * 120.00274 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.50037 * 62.28538 * 27 5 4 49 49 H 1.09000 * 109.49970 * 182.40199 * 27 5 4 50 50 H 1.08995 * 109.46742 * 54.13906 * 28 2 1 51 51 H 1.09004 * 109.45381 * 294.16241 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5183 1.3339 -0.1466 5 6 4.1186 0.5366 1.0146 6 6 5.6359 0.4443 0.8409 7 1 6.0786 1.4403 0.8430 8 8 5.9605 -0.2477 -0.3845 9 6 7.3180 -0.7097 -0.2125 10 6 7.3855 -1.2003 1.2508 11 6 6.2534 -0.4237 1.9597 12 1 5.5111 -1.1131 2.3619 13 6 6.8152 0.4468 3.0540 14 8 6.7391 1.6541 2.9678 15 7 7.4023 -0.1163 4.1287 16 6 7.9489 0.7299 5.1922 17 6 8.5534 -0.1525 6.2862 18 7 9.1006 0.6937 7.3495 19 6 9.6962 0.1215 8.4417 20 1 9.7629 -0.9536 8.5191 21 6 10.2152 0.9234 9.4490 22 7 10.1343 2.2337 9.3545 23 14 11.0283 0.1429 10.9386 24 1 12.4786 -0.0353 10.6744 25 1 10.8449 1.0230 12.1206 26 1 10.4075 -1.1796 11.2052 27 6 3.5176 -0.8718 1.0210 28 6 1.9948 -0.7709 1.1337 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7325 1.8609 0.9375 33 1 1.5636 1.9256 -0.8331 34 1 3.7814 0.8564 -1.0905 35 1 3.9102 2.3508 -0.1308 36 1 3.8884 1.0351 1.9563 37 1 7.5292 -1.5304 -0.8980 38 1 8.0203 0.1087 -0.3711 39 1 7.2028 -2.2737 1.3025 40 1 8.3524 -0.9568 1.6910 41 1 7.4628 -1.0820 4.1979 42 1 8.7219 1.3782 4.7796 43 1 7.1517 1.3399 5.6171 44 1 7.7801 -0.8006 6.6988 45 1 9.3505 -0.7628 5.8617 46 1 9.0410 1.6594 7.2798 47 1 10.4966 2.7940 10.0585 48 1 3.7809 -1.3840 0.0955 49 1 3.9093 -1.4307 1.8710 50 1 1.5627 -1.7715 1.1241 51 1 1.7319 -0.2707 2.0659 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127571183.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:49 Heat of formation + Delta-G solvation = -99.728380 kcal Electronic energy + Delta-G solvation = -28304.494371 eV Core-core repulsion = 24430.463846 eV Total energy + Delta-G solvation = -3874.030525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -41.80643 -40.12057 -39.10238 -37.32454 -35.56325 -34.94521 -33.67897 -32.85132 -31.78178 -30.17898 -29.45262 -27.20107 -25.72664 -24.64781 -24.08277 -23.40776 -23.02612 -22.38207 -20.93998 -20.47783 -19.35049 -18.45861 -17.45353 -17.23724 -16.79457 -16.56333 -16.44849 -16.05734 -15.96500 -15.90366 -15.48880 -15.29313 -15.15683 -14.93200 -14.62777 -14.55882 -14.50626 -14.00304 -13.39995 -13.32123 -13.17940 -13.06259 -13.02613 -12.81476 -12.67448 -12.53230 -12.35628 -12.25156 -12.09734 -12.04356 -12.01546 -11.86637 -11.64133 -11.34041 -11.11442 -11.00427 -10.95793 -10.59383 -10.18961 -9.28345 -9.08123 -7.98126 -5.29595 1.47824 1.50144 1.52112 1.58557 2.00628 2.56455 2.87299 3.00847 3.36172 3.47280 3.49987 3.68220 3.86264 3.89812 3.98360 4.00291 4.05699 4.17693 4.19340 4.25888 4.29300 4.33231 4.43333 4.50382 4.55948 4.56616 4.60311 4.64540 4.75354 4.79240 4.82947 4.89809 4.90858 4.99673 5.01446 5.02312 5.05389 5.11409 5.12501 5.14972 5.28943 5.35078 5.47904 5.51368 5.85137 6.12810 6.15533 6.22561 6.47900 7.16382 7.28782 8.00710 8.23288 9.25498 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.019304 B = 0.002139 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.150559 B =13089.851689 C =13762.986336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.553 5.553 3 C 0.058 3.942 4 C -0.104 4.104 5 C -0.079 4.079 6 C 0.100 3.900 7 H 0.060 0.940 8 O -0.371 6.371 9 C 0.039 3.961 10 C -0.140 4.140 11 C -0.136 4.136 12 H 0.137 0.863 13 C 0.518 3.482 14 O -0.582 6.582 15 N -0.707 5.707 16 C 0.128 3.872 17 C 0.149 3.851 18 N -0.748 5.748 19 C -0.247 4.247 20 H 0.084 0.916 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.980 3.020 24 H -0.286 1.286 25 H -0.297 1.297 26 H -0.265 1.265 27 C -0.104 4.104 28 C 0.054 3.946 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.023 0.977 32 H 0.026 0.974 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.118 0.882 38 H 0.051 0.949 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.418 0.582 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.038 0.962 45 H 0.039 0.961 46 H 0.373 0.627 47 H 0.252 0.748 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.087 0.913 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.054 -11.023 -23.327 30.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.278 5.278 3 C -0.070 4.070 4 C -0.142 4.142 5 C -0.097 4.097 6 C 0.042 3.958 7 H 0.078 0.922 8 O -0.290 6.290 9 C -0.037 4.037 10 C -0.178 4.178 11 C -0.158 4.158 12 H 0.155 0.845 13 C 0.306 3.694 14 O -0.462 6.462 15 N -0.359 5.359 16 C 0.003 3.997 17 C 0.022 3.978 18 N -0.391 5.391 19 C -0.379 4.379 20 H 0.102 0.898 21 C -0.271 4.271 22 N -0.621 5.621 23 Si 0.808 3.192 24 H -0.213 1.213 25 H -0.224 1.224 26 H -0.190 1.190 27 C -0.142 4.142 28 C -0.074 4.074 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.136 0.864 38 H 0.070 0.930 39 H 0.135 0.865 40 H 0.099 0.901 41 H 0.255 0.745 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.205 0.795 47 H 0.061 0.939 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.105 0.895 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -16.040 -10.589 -23.893 30.664 hybrid contribution 0.528 0.792 2.052 2.262 sum -15.513 -9.797 -21.840 28.524 Atomic orbital electron populations 1.22400 0.86387 1.02732 1.00853 1.61959 1.08433 1.13720 1.43701 1.22079 0.95238 0.89287 1.00427 1.21499 0.94251 0.99648 0.98804 1.21207 0.91853 0.97868 0.98797 1.22724 0.95615 0.94926 0.82558 0.92244 1.89135 1.29861 1.73906 1.36060 1.23563 0.83795 0.99584 0.96766 1.23000 0.97442 1.02282 0.95063 1.22847 1.00412 0.98124 0.94377 0.84531 1.20910 0.77043 0.88529 0.82966 1.90702 1.59182 1.16967 1.79382 1.45722 1.58998 1.11230 1.19989 1.21146 0.97384 0.93521 0.87685 1.20850 0.96122 0.92991 0.87788 1.42435 1.70206 1.05515 1.20954 1.19650 1.28867 0.92343 0.97012 0.89815 1.25693 1.03140 0.95939 1.02325 1.69834 1.52728 1.03935 1.35626 0.85052 0.78200 0.77556 0.78392 1.21286 1.22379 1.18959 1.21622 0.93863 0.95463 1.03210 1.22147 0.95670 0.98641 0.90938 0.90761 0.90456 0.95888 0.95546 0.89944 0.90939 0.92007 0.91627 0.86377 0.93016 0.86545 0.90130 0.74495 0.92953 0.92996 0.94410 0.94336 0.79515 0.93918 0.90441 0.90226 0.89462 0.95552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.59 127.69 1.22 1.53 16 2 N -0.55 -9.13 4.91 -922.62 -4.53 -13.66 16 3 C 0.06 0.99 5.47 86.33 0.47 1.46 16 4 C -0.10 -1.99 5.28 30.65 0.16 -1.83 16 5 C -0.08 -1.52 2.22 -10.71 -0.02 -1.55 16 6 C 0.10 2.10 2.39 31.10 0.07 2.18 16 7 H 0.06 1.62 6.91 -2.39 -0.02 1.60 16 8 O -0.37 -7.34 10.03 -148.98 -1.49 -8.83 16 9 C 0.04 0.59 7.63 72.49 0.55 1.14 16 10 C -0.14 -1.82 6.71 31.61 0.21 -1.61 16 11 C -0.14 -2.42 2.87 -10.52 -0.03 -2.45 16 12 H 0.14 1.82 5.66 -2.39 -0.01 1.81 16 13 C 0.52 13.52 6.94 87.65 0.61 14.13 16 14 O -0.58 -20.81 15.45 -3.03 -0.05 -20.85 16 15 N -0.71 -17.22 5.54 -463.07 -2.57 -19.79 16 16 C 0.13 4.24 5.79 86.38 0.50 4.74 16 17 C 0.15 5.52 6.37 86.38 0.55 6.07 16 18 N -0.75 -37.58 5.60 -343.46 -1.92 -39.51 16 19 C -0.25 -13.52 9.99 84.04 0.84 -12.68 16 20 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 21 C -0.08 -4.49 5.50 84.87 0.47 -4.02 16 22 N -0.97 -59.71 13.06 21.65 0.28 -59.43 16 23 Si 0.98 45.39 29.55 68.60 2.03 47.42 16 24 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 27 C -0.10 -1.62 4.92 30.65 0.15 -1.47 16 28 C 0.05 0.82 5.46 86.33 0.47 1.29 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.82 8.09 -2.39 -0.02 0.80 16 31 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.08 1.25 8.12 -2.39 -0.02 1.23 16 34 H 0.07 1.51 7.70 -2.39 -0.02 1.49 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.12 0.87 8.14 -2.39 -0.02 0.86 16 40 H 0.08 1.13 7.73 -2.39 -0.02 1.11 16 41 H 0.42 7.19 8.47 -92.71 -0.79 6.41 16 42 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.37 20.40 7.67 -92.71 -0.71 19.69 16 47 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 48 H 0.08 1.33 7.61 -2.39 -0.02 1.32 16 49 H 0.08 1.00 6.09 -2.39 -0.01 0.99 16 50 H 0.09 1.11 8.08 -2.39 -0.02 1.09 16 51 H 0.03 0.43 8.14 -2.38 -0.02 0.41 16 Total: -1.00 -71.48 396.74 -2.60 -74.08 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: -0.58 Total: 33.66 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 6.23 Total: 6.90 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -8.74 Total: -132.38 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -1.54 Total: -29.68 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -71.48 -2.60 -74.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127571183.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.650 kcal (2) G-P(sol) polarization free energy of solvation -71.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds