Wall clock time and date at job start Fri Apr 10 2020 18:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47414 * 2 1 4 4 C 1.34770 * 120.00493 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99735 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00557 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.47117 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.46843 * 180.02562 * 7 6 4 9 9 C 1.50703 * 109.47119 * 180.02562 * 8 7 6 10 10 O 1.21279 * 119.99761 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00354 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00285 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.49684 * 325.06063 * 12 11 9 14 14 C 1.53040 * 109.49782 * 204.99982 * 12 11 9 15 15 C 1.53038 * 109.54017 * 178.67970 * 14 12 11 16 16 C 1.53197 * 109.31159 * 61.36399 * 15 14 12 17 17 H 1.09001 * 109.58454 * 65.29562 * 16 15 14 18 18 C 1.52997 * 109.58686 * 185.57661 * 16 15 14 19 19 N 1.46921 * 108.77377 * 305.36657 * 16 15 14 20 20 C 1.36940 * 120.62879 * 233.63017 * 19 16 15 21 21 H 1.07993 * 120.00073 * 29.00766 * 20 19 16 22 22 C 1.38816 * 119.99698 * 209.00895 * 20 19 16 23 23 N 1.31611 * 120.00353 * 15.02131 * 22 20 19 24 24 Si 1.86806 * 119.99717 * 195.02198 * 22 20 19 25 25 H 1.48500 * 109.47108 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46783 * 119.99768 * 24 22 20 27 27 H 1.48492 * 109.47038 * 240.00018 * 24 22 20 28 28 C 1.46931 * 118.74364 * 53.61132 * 19 16 15 29 29 H 1.09006 * 109.46601 * 59.99867 * 1 2 3 30 30 H 1.09001 * 109.47499 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47010 * 300.00148 * 1 2 3 32 32 H 1.09004 * 109.47010 * 239.99852 * 2 1 3 33 33 H 1.08999 * 109.46818 * 120.00420 * 2 1 3 34 34 H 0.97007 * 120.00028 * 0.02562 * 3 2 1 35 35 H 1.08999 * 109.46676 * 60.00347 * 6 4 3 36 36 H 1.08994 * 109.46945 * 300.00283 * 6 4 3 37 37 H 1.08999 * 109.47028 * 60.00607 * 7 6 4 38 38 H 1.08994 * 109.47480 * 299.99999 * 7 6 4 39 39 H 1.08991 * 109.47117 * 60.00187 * 8 7 6 40 40 H 1.09006 * 109.47295 * 299.99912 * 8 7 6 41 41 H 0.97008 * 119.99684 * 359.97438 * 11 9 8 42 42 H 1.08999 * 109.45777 * 298.70085 * 14 12 11 43 43 H 1.08998 * 109.45878 * 58.65535 * 14 12 11 44 44 H 1.09004 * 109.49784 * 181.31330 * 15 14 12 45 45 H 1.08997 * 109.50029 * 301.41681 * 15 14 12 46 46 H 1.09002 * 109.46771 * 59.99986 * 18 16 15 47 47 H 1.08998 * 109.46868 * 179.97438 * 18 16 15 48 48 H 1.08996 * 109.47553 * 300.00289 * 18 16 15 49 49 H 0.97002 * 120.00054 * 180.02562 * 23 22 20 50 50 H 1.08999 * 109.58786 * 186.60579 * 28 19 16 51 51 H 1.08996 * 109.58546 * 66.17404 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 3.3434 1.6274 0.0005 5 8 4.1315 0.7056 0.0005 6 6 3.8458 3.0482 0.0011 7 6 5.3758 3.0481 0.0023 8 6 5.8858 4.4906 0.0035 9 6 7.3929 4.4906 0.0040 10 8 7.9992 3.4403 0.0039 11 7 8.0668 5.6577 0.0056 12 6 9.5318 5.6577 0.0056 13 1 9.8956 4.8145 0.5928 14 6 10.0427 6.9643 0.6171 15 6 11.5727 6.9513 0.6476 16 6 12.1071 6.8461 -0.7842 17 1 11.8416 7.7452 -1.3403 18 6 13.6291 6.6928 -0.7536 19 7 11.5064 5.6700 -1.4280 20 6 12.2954 4.7148 -2.0114 21 1 13.2928 4.5364 -1.6378 22 6 11.8130 3.9758 -3.0829 23 7 10.7374 4.3760 -3.7273 24 14 12.6905 2.4133 -3.6104 25 1 13.8641 2.1835 -2.7300 26 1 11.7586 1.2620 -3.5028 27 1 13.1458 2.5521 -5.0169 28 6 10.0431 5.5378 -1.4336 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.3881 2.1185 0.0004 35 1 3.4822 3.5617 0.8912 36 1 3.4828 3.5623 -0.8888 37 1 5.7398 2.5345 -0.8876 38 1 5.7385 2.5342 0.8924 39 1 5.5219 5.0039 0.8935 40 1 5.5232 5.0050 -0.8865 41 1 7.5818 6.4978 0.0061 42 1 9.6986 7.8056 0.0155 43 1 9.6599 7.0639 1.6328 44 1 11.9353 7.8721 1.1046 45 1 11.9177 6.0959 1.2284 46 1 13.8923 5.7906 -0.2015 47 1 14.0072 6.6177 -1.7732 48 1 14.0720 7.5603 -0.2645 49 1 10.4002 3.8594 -4.4758 50 1 9.7655 4.5653 -1.8401 51 1 9.6071 6.3291 -2.0433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132434375.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:16 Heat of formation + Delta-G solvation = -76.897897 kcal Electronic energy + Delta-G solvation = -28034.747655 eV Core-core repulsion = 24161.707134 eV Total energy + Delta-G solvation = -3873.040521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.93496 -39.34434 -37.59449 -35.62447 -34.45698 -34.02287 -32.75215 -31.18412 -30.63245 -29.79103 -28.31977 -25.89099 -24.91333 -23.63542 -22.33277 -22.05197 -20.63541 -20.35910 -19.81718 -19.13525 -17.31840 -16.53723 -16.39244 -16.24601 -16.02294 -15.53391 -15.38186 -14.86904 -14.41444 -14.00761 -13.80164 -13.72287 -13.37032 -13.33055 -13.14531 -13.01948 -12.68950 -12.37034 -12.22291 -12.09894 -12.05762 -11.75752 -11.65706 -11.41188 -11.35625 -11.07351 -10.82276 -10.72761 -10.65893 -10.44764 -10.33491 -10.19191 -9.98847 -9.89481 -9.67454 -9.38792 -9.32898 -9.18950 -8.42417 -8.34897 -6.55008 -5.67555 -3.11973 2.52366 2.93561 3.17264 3.47330 3.55766 3.56884 3.67733 4.48933 4.59645 4.67315 4.69951 4.84031 4.94778 4.95184 5.09194 5.35210 5.40334 5.41138 5.41898 5.43276 5.50659 5.53222 5.56170 5.62020 5.65304 5.70517 5.79582 6.02642 6.15773 6.16641 6.18522 6.31643 6.36617 6.43788 6.49179 6.50587 6.57829 6.67643 6.81565 7.06138 7.09170 7.17382 7.25043 7.40196 7.82697 7.92507 8.05302 8.07799 8.56867 8.79952 9.31368 9.95699 10.50521 11.40388 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.002545 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.976466 B =11000.854866 C =12527.323084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.112 3.888 3 N -0.738 5.738 4 C 0.509 3.491 5 O -0.531 6.531 6 C -0.139 4.139 7 C -0.090 4.090 8 C -0.139 4.139 9 C 0.506 3.494 10 O -0.529 6.529 11 N -0.724 5.724 12 C 0.116 3.884 13 H 0.080 0.920 14 C -0.115 4.115 15 C -0.126 4.126 16 C 0.165 3.835 17 H 0.024 0.976 18 C -0.136 4.136 19 N -0.584 5.584 20 C -0.251 4.251 21 H 0.071 0.929 22 C 0.005 3.995 23 N -0.901 5.901 24 Si 0.900 3.100 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.291 1.291 28 C 0.168 3.832 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.399 0.601 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.391 0.609 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.037 0.963 49 H 0.252 0.748 50 H 0.095 0.905 51 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.906 3.478 9.796 22.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.392 5.392 4 C 0.295 3.705 5 O -0.406 6.406 6 C -0.179 4.179 7 C -0.129 4.129 8 C -0.179 4.179 9 C 0.291 3.709 10 O -0.405 6.405 11 N -0.375 5.375 12 C 0.011 3.989 13 H 0.098 0.902 14 C -0.154 4.154 15 C -0.166 4.166 16 C 0.058 3.942 17 H 0.042 0.958 18 C -0.194 4.194 19 N -0.307 5.307 20 C -0.381 4.381 21 H 0.088 0.912 22 C -0.194 4.194 23 N -0.545 5.545 24 Si 0.730 3.270 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.219 1.219 28 C 0.041 3.959 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.233 0.767 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.223 0.777 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.114 0.886 51 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -18.918 1.922 9.643 21.321 hybrid contribution -0.375 0.048 -0.391 0.544 sum -19.293 1.969 9.252 21.487 Atomic orbital electron populations 1.22003 0.94516 1.03223 1.02432 1.21284 0.94104 0.83317 1.02484 1.46114 1.07359 1.08767 1.76991 1.20859 0.81895 0.92117 0.75609 1.90765 1.55149 1.46594 1.48075 1.21705 0.98528 0.93430 1.04250 1.21075 0.91308 0.95100 1.05396 1.21661 0.93215 0.99214 1.03837 1.20511 0.89707 0.84106 0.76571 1.90767 1.70223 1.31129 1.48381 1.46098 1.08007 1.07850 1.75524 1.21951 0.77550 0.97622 1.01822 0.90177 1.21671 0.97028 0.97364 0.99300 1.22048 0.94243 1.00588 0.99736 1.20480 0.92370 0.90630 0.90686 0.95833 1.21801 0.95873 0.99757 1.01952 1.44035 1.01283 1.20532 1.64869 1.19183 0.98635 1.11516 1.08748 0.91183 1.25071 0.98249 1.00125 0.95926 1.69998 1.24872 1.38262 1.21364 0.86266 0.79053 0.83871 0.77842 1.20254 1.21451 1.21857 1.21093 0.83184 1.02517 0.89108 0.91978 0.90838 0.92026 0.91523 0.91587 0.76686 0.88926 0.88761 0.90144 0.90469 0.89410 0.89073 0.77657 0.92386 0.93210 0.92779 0.92109 0.92780 0.92045 0.94383 0.93830 0.88640 0.96679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 10.03 37.16 0.37 -0.35 16 2 C 0.11 0.86 6.39 -4.04 -0.03 0.83 16 3 N -0.74 -5.77 5.55 -60.30 -0.33 -6.11 16 4 C 0.51 5.82 7.83 -10.99 -0.09 5.74 16 5 O -0.53 -8.91 15.98 5.55 0.09 -8.82 16 6 C -0.14 -1.21 5.70 -27.88 -0.16 -1.37 16 7 C -0.09 -1.19 3.79 -26.73 -0.10 -1.29 16 8 C -0.14 -1.61 5.70 -27.88 -0.16 -1.77 16 9 C 0.51 8.80 7.80 -10.99 -0.09 8.72 16 10 O -0.53 -12.22 15.64 5.56 0.09 -12.13 16 11 N -0.72 -11.73 5.08 -53.69 -0.27 -12.01 16 12 C 0.12 2.30 2.61 -67.81 -0.18 2.12 16 13 H 0.08 1.84 7.58 -51.93 -0.39 1.44 16 14 C -0.12 -1.89 5.35 -26.69 -0.14 -2.03 16 15 C -0.13 -2.20 5.37 -26.61 -0.14 -2.34 16 16 C 0.16 3.44 3.50 -67.60 -0.24 3.21 16 17 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 18 C -0.14 -2.61 7.95 37.16 0.30 -2.32 16 19 N -0.58 -14.85 2.99 -164.77 -0.49 -15.34 16 20 C -0.25 -7.04 8.61 -15.06 -0.13 -7.17 16 21 H 0.07 1.92 6.20 -52.49 -0.33 1.59 16 22 C 0.01 0.15 4.96 -17.43 -0.09 0.06 16 23 N -0.90 -27.27 11.14 55.49 0.62 -26.65 16 24 Si 0.90 23.07 29.58 -169.99 -5.03 18.04 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 C 0.17 4.15 4.87 -3.71 -0.02 4.13 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.40 1.78 8.47 -40.82 -0.35 1.43 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.32 8.06 -51.93 -0.42 0.90 16 38 H 0.08 1.18 8.06 -51.93 -0.42 0.76 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.39 4.79 8.61 -40.82 -0.35 4.44 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.05 1.06 7.40 -51.93 -0.38 0.68 16 47 H 0.06 1.27 7.66 -51.93 -0.40 0.87 16 48 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 50 H 0.10 2.80 6.06 -51.93 -0.31 2.49 16 51 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 404.40 15.07 6.09 6.09 Total: -1.00 -37.44 404.40 -9.37 -46.81 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -9.25 Total: 3.93 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -0.88 Total: 6.17 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -0.48 Total: -60.10 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.18 Total: -20.95 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.03 Total: 18.04 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.44 -9.37 -46.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132434375.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.085 kcal (2) G-P(sol) polarization free energy of solvation -37.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds