Wall clock time and date at job start Fri Apr 10 2020 18:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47414 * 2 1 4 4 C 1.34770 * 120.00493 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99735 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00557 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.47117 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.46843 * 180.02562 * 7 6 4 9 9 C 1.50703 * 109.47119 * 180.02562 * 8 7 6 10 10 O 1.21279 * 119.99761 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00354 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00285 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.49684 * 325.06063 * 12 11 9 14 14 C 1.53040 * 109.49782 * 204.99982 * 12 11 9 15 15 C 1.53038 * 109.54017 * 178.67970 * 14 12 11 16 16 C 1.53197 * 109.31159 * 61.36399 * 15 14 12 17 17 H 1.09001 * 109.58454 * 65.29562 * 16 15 14 18 18 C 1.52997 * 109.58686 * 185.57661 * 16 15 14 19 19 N 1.46921 * 108.77377 * 305.36657 * 16 15 14 20 20 C 1.36940 * 120.62879 * 233.63017 * 19 16 15 21 21 H 1.07993 * 120.00073 * 29.00766 * 20 19 16 22 22 C 1.38816 * 119.99698 * 209.00895 * 20 19 16 23 23 N 1.31611 * 120.00353 * 15.02131 * 22 20 19 24 24 Si 1.86806 * 119.99717 * 195.02198 * 22 20 19 25 25 H 1.48500 * 109.47108 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46783 * 119.99768 * 24 22 20 27 27 H 1.48492 * 109.47038 * 240.00018 * 24 22 20 28 28 C 1.46931 * 118.74364 * 53.61132 * 19 16 15 29 29 H 1.09006 * 109.46601 * 59.99867 * 1 2 3 30 30 H 1.09001 * 109.47499 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47010 * 300.00148 * 1 2 3 32 32 H 1.09004 * 109.47010 * 239.99852 * 2 1 3 33 33 H 1.08999 * 109.46818 * 120.00420 * 2 1 3 34 34 H 0.97007 * 120.00028 * 0.02562 * 3 2 1 35 35 H 1.08999 * 109.46676 * 60.00347 * 6 4 3 36 36 H 1.08994 * 109.46945 * 300.00283 * 6 4 3 37 37 H 1.08999 * 109.47028 * 60.00607 * 7 6 4 38 38 H 1.08994 * 109.47480 * 299.99999 * 7 6 4 39 39 H 1.08991 * 109.47117 * 60.00187 * 8 7 6 40 40 H 1.09006 * 109.47295 * 299.99912 * 8 7 6 41 41 H 0.97008 * 119.99684 * 359.97438 * 11 9 8 42 42 H 1.08999 * 109.45777 * 298.70085 * 14 12 11 43 43 H 1.08998 * 109.45878 * 58.65535 * 14 12 11 44 44 H 1.09004 * 109.49784 * 181.31330 * 15 14 12 45 45 H 1.08997 * 109.50029 * 301.41681 * 15 14 12 46 46 H 1.09002 * 109.46771 * 59.99986 * 18 16 15 47 47 H 1.08998 * 109.46868 * 179.97438 * 18 16 15 48 48 H 1.08996 * 109.47553 * 300.00289 * 18 16 15 49 49 H 0.97002 * 120.00054 * 180.02562 * 23 22 20 50 50 H 1.08999 * 109.58786 * 186.60579 * 28 19 16 51 51 H 1.08996 * 109.58546 * 66.17404 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 3.3434 1.6274 0.0005 5 8 4.1315 0.7056 0.0005 6 6 3.8458 3.0482 0.0011 7 6 5.3758 3.0481 0.0023 8 6 5.8858 4.4906 0.0035 9 6 7.3929 4.4906 0.0040 10 8 7.9992 3.4403 0.0039 11 7 8.0668 5.6577 0.0056 12 6 9.5318 5.6577 0.0056 13 1 9.8956 4.8145 0.5928 14 6 10.0427 6.9643 0.6171 15 6 11.5727 6.9513 0.6476 16 6 12.1071 6.8461 -0.7842 17 1 11.8416 7.7452 -1.3403 18 6 13.6291 6.6928 -0.7536 19 7 11.5064 5.6700 -1.4280 20 6 12.2954 4.7148 -2.0114 21 1 13.2928 4.5364 -1.6378 22 6 11.8130 3.9758 -3.0829 23 7 10.7374 4.3760 -3.7273 24 14 12.6905 2.4133 -3.6104 25 1 13.8641 2.1835 -2.7300 26 1 11.7586 1.2620 -3.5028 27 1 13.1458 2.5521 -5.0169 28 6 10.0431 5.5378 -1.4336 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.3881 2.1185 0.0004 35 1 3.4822 3.5617 0.8912 36 1 3.4828 3.5623 -0.8888 37 1 5.7398 2.5345 -0.8876 38 1 5.7385 2.5342 0.8924 39 1 5.5219 5.0039 0.8935 40 1 5.5232 5.0050 -0.8865 41 1 7.5818 6.4978 0.0061 42 1 9.6986 7.8056 0.0155 43 1 9.6599 7.0639 1.6328 44 1 11.9353 7.8721 1.1046 45 1 11.9177 6.0959 1.2284 46 1 13.8923 5.7906 -0.2015 47 1 14.0072 6.6177 -1.7732 48 1 14.0720 7.5603 -0.2645 49 1 10.4002 3.8594 -4.4758 50 1 9.7655 4.5653 -1.8401 51 1 9.6071 6.3291 -2.0433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132434375.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:15 Heat of formation + Delta-G solvation = -106.062946 kcal Electronic energy + Delta-G solvation = -28036.012346 eV Core-core repulsion = 24161.707134 eV Total energy + Delta-G solvation = -3874.305212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.02723 -40.63835 -39.24118 -36.40294 -35.98914 -35.19147 -34.65267 -32.37009 -31.78577 -31.58356 -29.27170 -27.65210 -26.66249 -24.53356 -23.94365 -23.06587 -22.07468 -21.36981 -21.25191 -20.74581 -18.36547 -18.32924 -17.63464 -17.32055 -17.14577 -16.85522 -16.59565 -16.31513 -15.78631 -15.44547 -15.35245 -15.03896 -14.96729 -14.62601 -14.36895 -14.26266 -14.10325 -13.63173 -13.43585 -13.10993 -12.89037 -12.82643 -12.71291 -12.70864 -12.68838 -12.54961 -12.42027 -12.36698 -12.27192 -12.10725 -11.96763 -11.71707 -11.65313 -11.39927 -11.12867 -10.97854 -10.66765 -10.55566 -10.10940 -9.99110 -8.62705 -7.86471 -5.32021 1.36646 1.42591 1.49397 1.65588 1.80308 2.16753 2.41324 2.51023 3.29990 3.65176 3.74308 3.90775 4.01122 4.06947 4.09423 4.11319 4.14712 4.19665 4.28116 4.40767 4.50127 4.61178 4.64271 4.65935 4.71167 4.72343 4.77205 4.85828 4.90812 4.97364 5.01178 5.03902 5.07873 5.17992 5.19988 5.25111 5.32840 5.37845 5.38899 5.50660 5.54374 5.57370 5.62772 5.69887 5.84228 6.40747 6.59027 6.75721 7.15373 7.31105 7.49395 7.90294 8.38300 9.18179 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.002545 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.976466 B =11000.854866 C =12527.323084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.106 3.894 3 N -0.718 5.718 4 C 0.499 3.501 5 O -0.599 6.599 6 C -0.125 4.125 7 C -0.089 4.089 8 C -0.122 4.122 9 C 0.493 3.507 10 O -0.599 6.599 11 N -0.709 5.709 12 C 0.129 3.871 13 H 0.042 0.958 14 C -0.105 4.105 15 C -0.119 4.119 16 C 0.153 3.847 17 H 0.024 0.976 18 C -0.130 4.130 19 N -0.604 5.604 20 C -0.247 4.247 21 H 0.074 0.926 22 C -0.056 4.056 23 N -0.933 5.933 24 Si 0.954 3.046 25 H -0.262 1.262 26 H -0.304 1.304 27 H -0.286 1.286 28 C 0.179 3.821 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.420 0.580 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.030 0.970 38 H 0.044 0.956 39 H 0.139 0.861 40 H 0.123 0.877 41 H 0.416 0.584 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.048 0.952 46 H 0.043 0.957 47 H 0.037 0.963 48 H 0.080 0.920 49 H 0.243 0.757 50 H 0.039 0.961 51 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.977 6.909 11.895 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 N -0.372 5.372 4 C 0.287 3.713 5 O -0.480 6.480 6 C -0.164 4.164 7 C -0.128 4.128 8 C -0.161 4.161 9 C 0.281 3.719 10 O -0.480 6.480 11 N -0.362 5.362 12 C 0.022 3.978 13 H 0.060 0.940 14 C -0.143 4.143 15 C -0.158 4.158 16 C 0.048 3.952 17 H 0.042 0.958 18 C -0.187 4.187 19 N -0.328 5.328 20 C -0.378 4.378 21 H 0.092 0.908 22 C -0.251 4.251 23 N -0.579 5.579 24 Si 0.783 3.217 25 H -0.186 1.186 26 H -0.232 1.232 27 H -0.212 1.212 28 C 0.052 3.948 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.258 0.742 35 H 0.155 0.845 36 H 0.146 0.854 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.157 0.843 40 H 0.141 0.859 41 H 0.253 0.747 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.099 0.901 49 H 0.052 0.948 50 H 0.058 0.942 51 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -21.049 5.454 11.771 24.726 hybrid contribution 0.272 -0.997 -1.019 1.451 sum -20.777 4.458 10.752 23.815 Atomic orbital electron populations 1.21937 0.91398 1.04110 1.03566 1.21348 0.96549 0.83024 1.00870 1.45989 1.06631 1.09653 1.74971 1.21489 0.82496 0.92745 0.74571 1.90747 1.57035 1.48717 1.51482 1.21679 0.94750 0.92102 1.07890 1.20953 0.94792 0.95489 1.01544 1.21688 0.88085 0.98690 1.07648 1.21727 0.92348 0.83125 0.74652 1.90748 1.72134 1.33695 1.51375 1.45912 1.06629 1.09000 1.74612 1.21449 0.79749 0.98724 0.97845 0.93954 1.21629 0.96333 0.95124 1.01231 1.21961 0.94869 1.02199 0.96817 1.20817 0.93424 0.88530 0.92470 0.95807 1.21737 0.94870 1.01232 1.00866 1.44337 1.01462 1.21934 1.65099 1.19511 0.98811 1.11655 1.07792 0.90819 1.25782 0.99445 1.03026 0.96880 1.70149 1.26538 1.39237 1.22012 0.85391 0.78160 0.80222 0.77925 1.18645 1.23234 1.21238 1.20787 0.83438 0.98744 0.91862 0.90930 0.90170 0.90660 0.93498 0.93109 0.74221 0.84518 0.85392 0.95064 0.93712 0.84316 0.85891 0.74696 0.90582 0.89587 0.88496 0.93308 0.93798 0.94355 0.90131 0.94758 0.94202 0.98236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.03 71.98 0.72 -0.33 16 2 C 0.11 1.61 6.39 86.38 0.55 2.17 16 3 N -0.72 -10.24 5.55 -463.07 -2.57 -12.82 16 4 C 0.50 11.34 7.83 87.66 0.69 12.03 16 5 O -0.60 -21.66 15.98 -3.04 -0.05 -21.71 16 6 C -0.12 -1.87 5.70 29.85 0.17 -1.70 16 7 C -0.09 -2.36 3.79 30.59 0.12 -2.25 16 8 C -0.12 -2.53 5.70 29.85 0.17 -2.36 16 9 C 0.49 17.33 7.80 87.66 0.68 18.01 16 10 O -0.60 -29.71 15.64 -3.03 -0.05 -29.76 16 11 N -0.71 -22.20 5.08 -442.16 -2.25 -24.45 16 12 C 0.13 5.13 2.61 45.07 0.12 5.24 16 13 H 0.04 2.01 7.58 -2.38 -0.02 2.00 16 14 C -0.11 -3.10 5.35 30.62 0.16 -2.93 16 15 C -0.12 -3.76 5.37 30.67 0.16 -3.60 16 16 C 0.15 6.18 3.50 44.98 0.16 6.33 16 17 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 18 C -0.13 -4.77 7.95 71.98 0.57 -4.20 16 19 N -0.60 -31.44 2.99 -675.23 -2.02 -33.46 16 20 C -0.25 -14.31 8.61 84.03 0.72 -13.59 16 21 H 0.07 4.12 6.20 -2.91 -0.02 4.11 16 22 C -0.06 -3.42 4.96 84.86 0.42 -3.00 16 23 N -0.93 -59.63 11.14 21.65 0.24 -59.39 16 24 Si 0.95 49.60 29.58 68.60 2.03 51.63 16 25 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 26 H -0.30 -16.52 7.11 99.48 0.71 -15.81 16 27 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 28 C 0.18 9.19 4.87 86.36 0.42 9.61 16 29 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.42 2.40 8.47 -92.70 -0.79 1.61 16 35 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.03 1.11 8.06 -2.39 -0.02 1.09 16 38 H 0.04 1.45 8.06 -2.39 -0.02 1.43 16 39 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.42 8.79 8.61 -92.70 -0.80 7.99 16 42 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 45 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.04 1.68 7.40 -2.39 -0.02 1.66 16 47 H 0.04 1.55 7.66 -2.39 -0.02 1.53 16 48 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 49 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 50 H 0.04 2.49 6.06 -2.39 -0.01 2.48 16 51 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 Total: -1.00 -94.82 404.40 0.51 -94.31 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -0.67 Total: 16.20 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 5.84 Total: 19.43 kcal Atomic # 7 Polarization: -123.51 SS G_CDS: -6.60 Total: -130.11 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.10 Total: -51.47 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.03 Total: 51.63 kcal Total: -94.82 0.51 -94.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132434375.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.752 kcal (2) G-P(sol) polarization free energy of solvation -94.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds