Wall clock time and date at job start Fri Apr 10 2020 18:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47083 * 2 1 4 4 C 1.34778 * 119.99761 * 179.97438 * 3 2 1 5 5 O 1.21276 * 120.00471 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99506 * 180.02562 * 4 3 2 7 7 C 1.53004 * 109.46774 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.47087 * 179.97438 * 7 6 4 9 9 C 1.50694 * 109.47151 * 179.97438 * 8 7 6 10 10 O 1.21286 * 120.00098 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00014 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00133 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.49540 * 35.00600 * 12 11 9 14 14 C 1.53041 * 109.49660 * 155.06457 * 12 11 9 15 15 C 1.53109 * 109.50295 * 58.62482 * 14 12 11 16 16 C 1.53188 * 109.33220 * 61.34043 * 15 14 12 17 17 H 1.09002 * 109.59022 * 65.14964 * 16 15 14 18 18 C 1.52998 * 109.70385 * 185.51101 * 16 15 14 19 19 N 1.46928 * 108.77770 * 305.36480 * 16 15 14 20 20 C 1.36931 * 120.63368 * 233.58973 * 19 16 15 21 21 H 1.07996 * 120.00124 * 29.03660 * 20 19 16 22 22 C 1.38815 * 119.99982 * 209.04006 * 20 19 16 23 23 N 1.31624 * 120.00167 * 15.00614 * 22 20 19 24 24 Si 1.86804 * 119.99996 * 195.01004 * 22 20 19 25 25 H 1.48498 * 109.46916 * 59.99961 * 24 22 20 26 26 H 1.48501 * 109.46872 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.46957 * 299.99710 * 24 22 20 28 28 C 1.46933 * 118.73721 * 53.60598 * 19 16 15 29 29 H 1.08996 * 109.47258 * 299.99765 * 1 2 3 30 30 H 1.09006 * 109.46930 * 60.00228 * 1 2 3 31 31 H 1.09002 * 109.46718 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47434 * 240.00416 * 2 1 3 33 33 H 1.09002 * 109.47345 * 120.00030 * 2 1 3 34 34 H 0.96998 * 120.00141 * 0.02562 * 3 2 1 35 35 H 1.08993 * 109.47237 * 299.99954 * 6 4 3 36 36 H 1.08996 * 109.47174 * 60.00111 * 6 4 3 37 37 H 1.08993 * 109.47294 * 300.00033 * 7 6 4 38 38 H 1.08996 * 109.47086 * 60.00171 * 7 6 4 39 39 H 1.09002 * 109.46905 * 300.00397 * 8 7 6 40 40 H 1.09005 * 109.46736 * 60.00086 * 8 7 6 41 41 H 0.97005 * 120.00286 * 0.02562 * 11 9 8 42 42 H 1.09002 * 109.46069 * 178.60552 * 14 12 11 43 43 H 1.09001 * 109.46363 * 298.56566 * 14 12 11 44 44 H 1.08999 * 109.48342 * 301.38197 * 15 14 12 45 45 H 1.09003 * 109.51612 * 181.31585 * 15 14 12 46 46 H 1.09009 * 109.47193 * 179.35985 * 18 16 15 47 47 H 1.09002 * 109.47244 * 299.35852 * 18 16 15 48 48 H 1.09002 * 109.47119 * 59.35849 * 18 16 15 49 49 H 0.96993 * 119.99926 * 180.02562 * 23 22 20 50 50 H 1.08991 * 109.58819 * 186.60585 * 28 19 16 51 51 H 1.09000 * 109.69722 * 66.24899 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8457 3.0484 0.0011 7 6 5.3757 3.0484 0.0023 8 6 5.8857 4.4909 0.0022 9 6 7.3927 4.4909 0.0040 10 8 7.9991 3.4405 0.0047 11 7 8.0665 5.6580 0.0037 12 6 9.5315 5.6581 0.0060 13 1 9.8963 4.8158 -0.5819 14 6 10.0432 6.9656 -0.6028 15 6 9.5042 8.1503 0.2034 16 6 10.0130 8.0559 1.6453 17 1 11.0969 8.1701 1.6586 18 6 9.3708 9.1566 2.4920 19 7 9.6497 6.7405 2.1898 20 6 8.9603 6.6396 3.3686 21 1 8.2874 7.4287 3.6699 22 6 9.1263 5.5229 4.1764 23 7 10.1426 4.7108 3.9759 24 14 7.9074 5.1727 5.5479 25 1 6.5499 4.9998 4.9714 26 1 8.3049 3.9306 6.2582 27 1 7.8983 6.3089 6.5040 28 6 10.0406 5.5354 1.4457 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.3880 2.1185 0.0004 35 1 3.4827 3.5624 -0.8888 36 1 3.4820 3.5619 0.8911 37 1 5.7384 2.5344 0.8924 38 1 5.7397 2.5347 -0.8875 39 1 5.5230 5.0044 -0.8882 40 1 5.5217 5.0049 0.8918 41 1 7.5815 6.4982 0.0028 42 1 11.1329 6.9756 -0.5782 43 1 9.7028 7.0431 -1.6354 44 1 8.4145 8.1268 0.1999 45 1 9.8495 9.0824 -0.2439 46 1 9.7267 9.0789 3.5195 47 1 9.6415 10.1315 2.0865 48 1 8.2868 9.0436 2.4734 49 1 10.2584 3.9304 4.5400 50 1 9.5993 4.6566 1.9156 51 1 11.1266 5.4417 1.4425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132434376.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:19 Heat of formation + Delta-G solvation = -101.681190 kcal Electronic energy + Delta-G solvation = -28721.031290 eV Core-core repulsion = 24846.916085 eV Total energy + Delta-G solvation = -3874.115205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.04889 -40.66808 -39.16446 -36.39593 -35.76033 -35.17129 -34.46757 -32.34161 -31.74562 -31.58193 -29.18433 -27.75684 -26.68891 -24.57647 -23.85393 -23.12929 -22.07783 -21.50174 -21.20715 -20.31930 -18.46978 -18.16848 -17.63947 -17.18279 -17.12503 -16.83251 -16.50180 -16.22665 -15.77570 -15.47052 -15.37519 -14.99416 -14.82127 -14.59832 -14.35473 -14.19604 -14.03683 -13.67742 -13.46537 -12.96091 -12.88811 -12.84555 -12.73906 -12.70413 -12.57188 -12.52575 -12.41105 -12.38105 -12.36970 -12.10750 -12.05680 -11.72086 -11.54562 -11.19140 -11.02918 -10.97809 -10.67233 -10.47865 -10.11441 -9.84717 -8.55663 -7.79461 -5.25209 1.41821 1.44982 1.51110 1.64371 1.87233 2.19861 2.51824 2.56300 3.36433 3.65657 3.73551 3.90523 4.06200 4.06531 4.10845 4.13620 4.15830 4.19497 4.21975 4.49783 4.52685 4.60761 4.63866 4.68457 4.71008 4.75300 4.81740 4.86616 4.96274 4.99379 5.03608 5.07882 5.14160 5.15578 5.18380 5.24738 5.30298 5.36203 5.38030 5.50267 5.60421 5.65195 5.73366 5.77916 5.83295 6.46021 6.57747 6.82831 7.20443 7.29507 7.54414 7.95636 8.46789 9.25496 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.003073 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.356803 B = 9108.899279 C =10264.819916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.106 3.894 3 N -0.719 5.719 4 C 0.501 3.499 5 O -0.597 6.597 6 C -0.127 4.127 7 C -0.085 4.085 8 C -0.126 4.126 9 C 0.497 3.503 10 O -0.603 6.603 11 N -0.692 5.692 12 C 0.127 3.873 13 H 0.056 0.944 14 C -0.109 4.109 15 C -0.116 4.116 16 C 0.152 3.848 17 H 0.008 0.992 18 C -0.127 4.127 19 N -0.593 5.593 20 C -0.233 4.233 21 H 0.082 0.918 22 C -0.060 4.060 23 N -0.941 5.941 24 Si 0.952 3.048 25 H -0.276 1.276 26 H -0.310 1.310 27 H -0.269 1.269 28 C 0.171 3.829 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.420 0.580 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.028 0.972 38 H 0.050 0.950 39 H 0.137 0.863 40 H 0.110 0.890 41 H 0.409 0.591 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.032 0.968 47 H 0.075 0.925 48 H 0.056 0.944 49 H 0.240 0.760 50 H 0.046 0.954 51 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.227 5.716 -13.045 24.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 N -0.373 5.373 4 C 0.289 3.711 5 O -0.477 6.477 6 C -0.167 4.167 7 C -0.124 4.124 8 C -0.165 4.165 9 C 0.285 3.715 10 O -0.484 6.484 11 N -0.343 5.343 12 C 0.020 3.980 13 H 0.074 0.926 14 C -0.147 4.147 15 C -0.155 4.155 16 C 0.047 3.953 17 H 0.026 0.974 18 C -0.185 4.185 19 N -0.317 5.317 20 C -0.364 4.364 21 H 0.099 0.901 22 C -0.255 4.255 23 N -0.588 5.588 24 Si 0.781 3.219 25 H -0.202 1.202 26 H -0.237 1.237 27 H -0.194 1.194 28 C 0.044 3.956 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.257 0.743 35 H 0.156 0.844 36 H 0.140 0.860 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.155 0.845 40 H 0.128 0.872 41 H 0.247 0.753 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.108 0.892 46 H 0.052 0.948 47 H 0.094 0.906 48 H 0.075 0.925 49 H 0.049 0.951 50 H 0.064 0.936 51 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges -19.227 4.232 -12.944 23.561 hybrid contribution 0.032 -0.666 1.406 1.556 sum -19.195 3.566 -11.538 22.678 Atomic orbital electron populations 1.21938 0.91415 1.04141 1.03535 1.21360 0.96543 0.82919 1.00936 1.46000 1.06596 1.09731 1.74987 1.21406 0.82536 0.92578 0.74584 1.90731 1.56979 1.48585 1.51442 1.21689 0.94993 0.92327 1.07661 1.20917 0.94620 0.95247 1.01581 1.21663 0.89129 0.98779 1.06951 1.21468 0.92023 0.83267 0.74771 1.90682 1.71991 1.33462 1.52281 1.45748 1.06597 1.08493 1.73466 1.21391 0.80923 0.98586 0.97078 0.92632 1.21660 1.00787 0.92827 0.99460 1.21948 1.00927 0.97910 0.94746 1.20796 0.95365 0.85638 0.93540 0.97426 1.21719 1.00619 0.97165 0.98977 1.44248 1.65006 1.00225 1.22174 1.19426 1.16314 1.04508 0.96157 0.90085 1.25812 0.98587 1.00620 1.00434 1.70177 1.30363 1.16423 1.41877 0.85559 0.79645 0.76667 0.80022 1.20154 1.23747 1.19432 1.20835 0.94081 0.90931 0.89750 0.91055 0.90630 0.90065 0.92900 0.93520 0.74276 0.84431 0.86027 0.95292 0.93109 0.84497 0.87219 0.75329 0.91541 0.89515 0.91221 0.89216 0.94836 0.90624 0.92501 0.95115 0.93560 0.99395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.03 71.98 0.72 -0.48 16 2 C 0.11 1.72 6.39 86.38 0.55 2.27 16 3 N -0.72 -11.36 5.56 -463.05 -2.57 -13.93 16 4 C 0.50 12.23 7.83 87.66 0.69 12.91 16 5 O -0.60 -22.15 15.98 -3.02 -0.05 -22.20 16 6 C -0.13 -2.26 5.70 29.85 0.17 -2.09 16 7 C -0.08 -2.47 3.79 30.60 0.12 -2.35 16 8 C -0.13 -3.13 5.70 29.85 0.17 -2.96 16 9 C 0.50 18.61 7.80 87.66 0.68 19.29 16 10 O -0.60 -29.76 15.65 -3.05 -0.05 -29.80 16 11 N -0.69 -23.55 4.92 -442.17 -2.17 -25.72 16 12 C 0.13 4.94 2.81 45.07 0.13 5.07 16 13 H 0.06 2.36 7.58 -2.38 -0.02 2.34 16 14 C -0.11 -3.17 5.59 30.64 0.17 -3.00 16 15 C -0.12 -3.15 5.21 30.69 0.16 -2.99 16 16 C 0.15 5.65 3.49 44.97 0.16 5.81 16 17 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 18 C -0.13 -4.15 7.95 71.98 0.57 -3.57 16 19 N -0.59 -28.29 2.91 -675.24 -1.96 -30.25 16 20 C -0.23 -12.29 8.60 84.04 0.72 -11.57 16 21 H 0.08 3.99 6.21 -2.91 -0.02 3.98 16 22 C -0.06 -3.46 4.96 84.86 0.42 -3.04 16 23 N -0.94 -59.61 11.14 21.65 0.24 -59.37 16 24 Si 0.95 46.49 29.58 68.60 2.03 48.51 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 H -0.31 -16.00 7.11 99.48 0.71 -15.29 16 27 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 28 C 0.17 8.70 4.89 86.36 0.42 9.12 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.41 8.14 -2.38 -0.02 0.40 16 31 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.42 3.15 8.47 -92.71 -0.79 2.36 16 35 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.03 1.11 8.06 -2.39 -0.02 1.09 16 38 H 0.05 1.70 8.06 -2.39 -0.02 1.68 16 39 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 41 H 0.41 11.12 6.77 -92.70 -0.63 10.49 16 42 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.07 1.73 6.40 -2.39 -0.02 1.71 16 45 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.03 1.25 7.62 -2.38 -0.02 1.23 16 47 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.06 1.79 7.44 -2.39 -0.02 1.77 16 49 H 0.24 15.21 8.31 -92.71 -0.77 14.44 16 50 H 0.05 2.84 6.06 -2.39 -0.01 2.83 16 51 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 Total: -1.00 -88.49 400.90 0.82 -87.67 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -0.50 Total: 22.67 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: 5.85 Total: 22.42 kcal Atomic # 7 Polarization: -122.80 SS G_CDS: -6.47 Total: -129.27 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -0.10 Total: -52.01 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -88.49 0.82 -87.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132434376.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.008 kcal (2) G-P(sol) polarization free energy of solvation -88.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds