Wall clock time and date at job start Fri Apr 10 2020 18:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47478 * 2 1 4 4 C 1.34779 * 120.00288 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99816 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99858 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.46941 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47190 * 180.02562 * 7 6 4 9 9 C 1.50696 * 109.46933 * 180.02562 * 8 7 6 10 10 O 1.21276 * 120.00143 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99719 * 179.97438 * 9 8 7 12 12 C 1.46504 * 120.00007 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.52264 * 325.08871 * 12 11 9 14 14 C 1.53039 * 109.49590 * 204.99971 * 12 11 9 15 15 C 1.53033 * 109.54087 * 301.41315 * 14 12 11 16 16 C 1.53189 * 109.31690 * 298.64016 * 15 14 12 17 17 H 1.09004 * 109.58139 * 294.70208 * 16 15 14 18 18 C 1.52997 * 109.58826 * 174.42485 * 16 15 14 19 19 N 1.46920 * 108.89404 * 54.56167 * 16 15 14 20 20 C 1.36937 * 120.63511 * 126.46359 * 19 16 15 21 21 H 1.07998 * 119.99392 * 330.22743 * 20 19 16 22 22 C 1.38804 * 120.00464 * 150.22504 * 20 19 16 23 23 N 1.31626 * 120.00007 * 344.61315 * 22 20 19 24 24 Si 1.86797 * 120.00220 * 164.61293 * 22 20 19 25 25 H 1.48500 * 109.47235 * 90.00333 * 24 22 20 26 26 H 1.48503 * 109.47204 * 209.99982 * 24 22 20 27 27 H 1.48495 * 109.47002 * 329.99838 * 24 22 20 28 28 C 1.46966 * 118.71723 * 306.64164 * 19 16 15 29 29 H 1.09002 * 109.46597 * 60.00070 * 1 2 3 30 30 H 1.08999 * 109.47355 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46873 * 300.00344 * 1 2 3 32 32 H 1.08994 * 109.47762 * 239.99727 * 2 1 3 33 33 H 1.09002 * 109.47100 * 120.00093 * 2 1 3 34 34 H 0.96999 * 119.99799 * 359.97438 * 3 2 1 35 35 H 1.08999 * 109.46752 * 60.00542 * 6 4 3 36 36 H 1.08992 * 109.47600 * 300.00288 * 6 4 3 37 37 H 1.09005 * 109.47020 * 60.00093 * 7 6 4 38 38 H 1.09002 * 109.46939 * 300.00243 * 7 6 4 39 39 H 1.08999 * 109.46776 * 60.00025 * 8 7 6 40 40 H 1.08992 * 109.47209 * 300.00466 * 8 7 6 41 41 H 0.96998 * 119.99970 * 0.02562 * 11 9 8 42 42 H 1.09006 * 109.45333 * 181.39556 * 14 12 11 43 43 H 1.09002 * 109.44711 * 61.43737 * 14 12 11 44 44 H 1.08997 * 109.49651 * 178.68277 * 15 14 12 45 45 H 1.09003 * 109.52222 * 58.60730 * 15 14 12 46 46 H 1.08998 * 109.47220 * 60.27894 * 18 16 15 47 47 H 1.09005 * 109.46603 * 300.28164 * 18 16 15 48 48 H 1.09001 * 109.47050 * 180.28187 * 18 16 15 49 49 H 0.96998 * 120.00060 * 180.02562 * 23 22 20 50 50 H 1.08994 * 109.46757 * 293.57833 * 28 19 16 51 51 H 1.08994 * 109.59821 * 173.21574 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6275 0.0005 5 8 4.1316 0.7056 0.0005 6 6 3.8458 3.0483 -0.0001 7 6 5.3759 3.0482 0.0001 8 6 5.8859 4.4907 0.0001 9 6 7.3929 4.4906 -0.0004 10 8 7.9992 3.4403 -0.0012 11 7 8.0668 5.6578 -0.0010 12 6 9.5318 5.6578 -0.0009 13 1 9.8960 4.8157 0.5875 14 6 10.0426 6.9656 0.6081 15 6 9.5049 8.1500 -0.1981 16 6 10.0158 8.0558 -1.6392 17 1 11.0995 8.1726 -1.6509 18 6 9.3722 9.1566 -2.4846 19 7 9.6561 6.7406 -2.1864 20 6 8.9703 6.6401 -3.3674 21 1 8.2882 7.4231 -3.6640 22 6 9.1519 5.5320 -4.1834 23 7 10.1821 4.7353 -3.9917 24 14 7.9345 5.1712 -5.5534 25 1 8.3749 5.8501 -6.7985 26 1 7.8698 3.7058 -5.7850 27 1 6.5909 5.6709 -5.1658 28 6 10.0431 5.5353 -1.4399 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.3881 2.1185 -0.0004 35 1 3.4821 3.5625 0.8895 36 1 3.4830 3.5616 -0.8904 37 1 5.7392 2.5340 -0.8897 38 1 5.7391 2.5347 0.8903 39 1 5.5225 5.0045 0.8901 40 1 5.5226 5.0046 -0.8898 41 1 7.5818 6.4979 -0.0007 42 1 11.1323 6.9755 0.5852 43 1 9.7004 7.0433 1.6401 44 1 9.8499 9.0818 0.2501 45 1 8.4151 8.1272 -0.1962 46 1 9.6360 10.1312 -2.0740 47 1 8.2886 9.0381 -2.4714 48 1 9.7331 9.0847 -3.5106 49 1 10.3092 3.9611 -4.5622 50 1 11.1292 5.4440 -1.4351 51 1 9.6025 4.6565 -1.9106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132434377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:22 Heat of formation + Delta-G solvation = -102.268444 kcal Electronic energy + Delta-G solvation = -28708.760716 eV Core-core repulsion = 24834.620045 eV Total energy + Delta-G solvation = -3874.140670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.04927 -40.66669 -39.16526 -36.39427 -35.76150 -35.16972 -34.46379 -32.34112 -31.75700 -31.58512 -29.18284 -27.75568 -26.68504 -24.57582 -23.86159 -23.12798 -22.07886 -21.50059 -21.20429 -20.32076 -18.46863 -18.16704 -17.63865 -17.18007 -17.12088 -16.83066 -16.50379 -16.22809 -15.77570 -15.46887 -15.37897 -14.99367 -14.82419 -14.60256 -14.35732 -14.19762 -14.03862 -13.68308 -13.46548 -12.96175 -12.90182 -12.83622 -12.75332 -12.70373 -12.59394 -12.48212 -12.40770 -12.39444 -12.36908 -12.10526 -12.05167 -11.71697 -11.54689 -11.19125 -11.02832 -10.97595 -10.67217 -10.49143 -10.11286 -9.84831 -8.54702 -7.80256 -5.26116 1.41241 1.44201 1.51994 1.64603 1.87186 2.20019 2.51508 2.56154 3.36182 3.65526 3.73793 3.90622 4.06194 4.06758 4.11006 4.13637 4.15991 4.19580 4.21784 4.49883 4.52362 4.61078 4.64223 4.68633 4.71225 4.75495 4.81971 4.86650 4.96415 4.99332 5.03679 5.07877 5.14121 5.15568 5.18695 5.24818 5.30472 5.36059 5.38347 5.50480 5.60603 5.64454 5.73666 5.76117 5.83072 6.46002 6.57959 6.82771 7.20264 7.29755 7.54357 7.95197 8.46972 9.25158 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.012951 B = 0.003068 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.427964 B = 9125.246805 C =10285.475500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.106 3.894 3 N -0.719 5.719 4 C 0.501 3.499 5 O -0.597 6.597 6 C -0.127 4.127 7 C -0.085 4.085 8 C -0.126 4.126 9 C 0.497 3.503 10 O -0.603 6.603 11 N -0.692 5.692 12 C 0.127 3.873 13 H 0.056 0.944 14 C -0.109 4.109 15 C -0.117 4.117 16 C 0.152 3.848 17 H 0.008 0.992 18 C -0.127 4.127 19 N -0.593 5.593 20 C -0.233 4.233 21 H 0.081 0.919 22 C -0.060 4.060 23 N -0.941 5.941 24 Si 0.950 3.050 25 H -0.284 1.284 26 H -0.311 1.311 27 H -0.258 1.258 28 C 0.173 3.827 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.420 0.580 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.028 0.972 38 H 0.050 0.950 39 H 0.137 0.863 40 H 0.111 0.889 41 H 0.409 0.591 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.056 0.944 48 H 0.032 0.968 49 H 0.240 0.760 50 H -0.011 1.011 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.391 5.692 13.147 24.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 N -0.373 5.373 4 C 0.289 3.711 5 O -0.478 6.478 6 C -0.167 4.167 7 C -0.124 4.124 8 C -0.165 4.165 9 C 0.285 3.715 10 O -0.484 6.484 11 N -0.343 5.343 12 C 0.020 3.980 13 H 0.074 0.926 14 C -0.147 4.147 15 C -0.155 4.155 16 C 0.047 3.953 17 H 0.025 0.975 18 C -0.185 4.185 19 N -0.317 5.317 20 C -0.364 4.364 21 H 0.099 0.901 22 C -0.254 4.254 23 N -0.588 5.588 24 Si 0.780 3.220 25 H -0.211 1.211 26 H -0.239 1.239 27 H -0.182 1.182 28 C 0.046 3.954 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.257 0.743 35 H 0.155 0.845 36 H 0.140 0.860 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.155 0.845 40 H 0.129 0.871 41 H 0.247 0.753 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.075 0.925 48 H 0.052 0.948 49 H 0.049 0.951 50 H 0.006 0.994 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -19.398 4.211 13.051 23.756 hybrid contribution 0.064 -0.689 -1.419 1.579 sum -19.335 3.523 11.632 22.837 Atomic orbital electron populations 1.21937 0.91418 1.04137 1.03536 1.21357 0.96539 0.82931 1.00932 1.46001 1.06605 1.09722 1.74988 1.21413 0.82528 0.92594 0.74579 1.90733 1.56989 1.48588 1.51448 1.21688 0.94991 0.92301 1.07683 1.20921 0.94617 0.95256 1.01589 1.21663 0.89086 0.98771 1.06999 1.21477 0.92038 0.83249 0.74764 1.90681 1.72002 1.33469 1.52273 1.45752 1.06580 1.08515 1.73486 1.21389 0.80938 0.98614 0.97023 0.92584 1.21648 1.00801 0.92814 0.99473 1.21937 1.00937 0.97924 0.94744 1.20791 0.95365 0.85644 0.93532 0.97455 1.21718 1.00605 0.97164 0.98990 1.44240 1.65410 1.00200 1.21810 1.19432 1.15950 1.05156 0.95821 0.90139 1.25824 0.98432 1.00799 1.00350 1.70187 1.29593 1.17402 1.41596 0.85516 0.80498 0.75827 0.80199 1.21131 1.23923 1.18195 1.20814 0.94090 0.90765 0.89767 0.91055 0.90074 0.90629 0.93521 0.92916 0.74275 0.84451 0.85965 0.95256 0.93147 0.84516 0.87119 0.75312 0.91538 0.89502 0.89209 0.91195 0.90626 0.92511 0.94847 0.95115 0.99354 0.93887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.03 71.98 0.72 -0.47 16 2 C 0.11 1.71 6.39 86.38 0.55 2.26 16 3 N -0.72 -11.27 5.56 -463.06 -2.57 -13.84 16 4 C 0.50 12.14 7.83 87.66 0.69 12.83 16 5 O -0.60 -22.09 15.98 -3.03 -0.05 -22.14 16 6 C -0.13 -2.22 5.70 29.85 0.17 -2.05 16 7 C -0.09 -2.45 3.79 30.60 0.12 -2.34 16 8 C -0.13 -3.08 5.70 29.85 0.17 -2.91 16 9 C 0.50 18.48 7.80 87.66 0.68 19.16 16 10 O -0.60 -29.64 15.65 -3.02 -0.05 -29.68 16 11 N -0.69 -23.41 4.92 -442.15 -2.18 -25.58 16 12 C 0.13 4.93 2.81 45.07 0.13 5.05 16 13 H 0.06 2.37 7.58 -2.39 -0.02 2.35 16 14 C -0.11 -3.16 5.58 30.62 0.17 -2.99 16 15 C -0.12 -3.15 5.21 30.67 0.16 -2.99 16 16 C 0.15 5.65 3.49 44.97 0.16 5.81 16 17 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 18 C -0.13 -4.15 7.95 71.98 0.57 -3.57 16 19 N -0.59 -28.28 2.91 -675.16 -1.97 -30.25 16 20 C -0.23 -12.26 8.57 84.03 0.72 -11.54 16 21 H 0.08 3.97 6.23 -2.91 -0.02 3.95 16 22 C -0.06 -3.43 4.94 84.86 0.42 -3.01 16 23 N -0.94 -59.60 11.24 21.65 0.24 -59.36 16 24 Si 0.95 46.46 29.58 68.60 2.03 48.49 16 25 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 26 H -0.31 -16.21 7.11 99.48 0.71 -15.50 16 27 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 28 C 0.17 8.77 4.88 86.36 0.42 9.19 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.42 3.09 8.47 -92.71 -0.79 2.31 16 35 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.03 1.11 8.06 -2.38 -0.02 1.09 16 38 H 0.05 1.68 8.06 -2.39 -0.02 1.66 16 39 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.41 11.03 6.77 -92.71 -0.63 10.41 16 42 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.07 1.73 6.40 -2.39 -0.02 1.71 16 46 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.06 1.79 7.42 -2.38 -0.02 1.77 16 48 H 0.03 1.25 7.64 -2.39 -0.02 1.23 16 49 H 0.24 15.17 8.31 -92.71 -0.77 14.40 16 50 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 51 H 0.04 2.64 6.16 -2.39 -0.01 2.62 16 Total: -1.00 -88.77 401.07 0.81 -87.96 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -0.50 Total: 21.98 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: 5.85 Total: 22.43 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -6.47 Total: -129.04 kcal Atomic # 8 Polarization: -51.73 SS G_CDS: -0.10 Total: -51.82 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -88.77 0.81 -87.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132434377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.309 kcal (2) G-P(sol) polarization free energy of solvation -88.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds