Wall clock time and date at job start Fri Apr 10 2020 18:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47212 * 2 1 4 4 C 1.34772 * 120.00302 * 179.72842 * 3 2 1 5 5 O 1.21281 * 119.99823 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00171 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.46884 * 179.97438 * 6 4 3 8 8 C 1.53004 * 109.46917 * 179.97438 * 7 6 4 9 9 C 1.50692 * 109.46906 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00413 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99901 * 180.02562 * 9 8 7 12 12 C 1.46504 * 120.00123 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.49737 * 34.93274 * 12 11 9 14 14 C 1.53040 * 109.49672 * 154.99887 * 12 11 9 15 15 C 1.53038 * 109.54039 * 181.31524 * 14 12 11 16 16 C 1.53200 * 109.30988 * 298.63793 * 15 14 12 17 17 H 1.08998 * 109.58182 * 294.84049 * 16 15 14 18 18 C 1.53001 * 109.58274 * 174.41854 * 16 15 14 19 19 N 1.46924 * 108.77732 * 54.63272 * 16 15 14 20 20 C 1.36936 * 120.63080 * 126.41254 * 19 16 15 21 21 H 1.08002 * 120.00307 * 330.15834 * 20 19 16 22 22 C 1.38810 * 120.00000 * 150.16360 * 20 19 16 23 23 N 1.31624 * 119.99719 * 344.48256 * 22 20 19 24 24 Si 1.86795 * 120.00392 * 164.48679 * 22 20 19 25 25 H 1.48500 * 109.47465 * 89.99665 * 24 22 20 26 26 H 1.48504 * 109.47404 * 209.99812 * 24 22 20 27 27 H 1.48504 * 109.46833 * 329.99773 * 24 22 20 28 28 C 1.46926 * 118.73925 * 306.39199 * 19 16 15 29 29 H 1.09004 * 109.46728 * 299.99244 * 1 2 3 30 30 H 1.08993 * 109.47247 * 59.99619 * 1 2 3 31 31 H 1.09007 * 109.46856 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46901 * 240.00395 * 2 1 3 33 33 H 1.08997 * 109.47638 * 120.00684 * 2 1 3 34 34 H 0.97002 * 119.99421 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.46575 * 299.99614 * 6 4 3 36 36 H 1.08999 * 109.47271 * 59.99711 * 6 4 3 37 37 H 1.09002 * 109.46912 * 299.99687 * 7 6 4 38 38 H 1.08999 * 109.47361 * 59.99817 * 7 6 4 39 39 H 1.08991 * 109.47006 * 300.00098 * 8 7 6 40 40 H 1.08999 * 109.46897 * 59.99971 * 8 7 6 41 41 H 0.97001 * 119.99761 * 359.97438 * 11 9 8 42 42 H 1.08998 * 109.46394 * 301.33739 * 14 12 11 43 43 H 1.09003 * 109.46238 * 61.30987 * 14 12 11 44 44 H 1.09004 * 109.49640 * 58.58031 * 15 14 12 45 45 H 1.08992 * 109.50463 * 178.68458 * 15 14 12 46 46 H 1.08994 * 109.47326 * 59.99970 * 18 16 15 47 47 H 1.09008 * 109.47086 * 179.97438 * 18 16 15 48 48 H 1.08996 * 109.47423 * 299.99748 * 18 16 15 49 49 H 0.97006 * 119.99637 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.58522 * 293.82011 * 28 19 16 51 51 H 1.08994 * 109.58716 * 173.39717 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0055 5 8 4.1315 0.7057 0.0100 6 6 3.8457 3.0484 0.0061 7 6 5.3757 3.0483 0.0135 8 6 5.8857 4.4909 0.0134 9 6 7.3926 4.4908 0.0213 10 8 7.9991 3.4405 0.0260 11 7 8.0665 5.6580 0.0231 12 6 9.5315 5.6580 0.0302 13 1 9.8982 4.8150 -0.5553 14 6 10.0453 6.9648 -0.5786 15 6 11.5754 6.9519 -0.6017 16 6 12.1029 6.8465 0.8328 17 1 11.8324 7.7444 1.3883 18 6 13.6250 6.6932 0.8095 19 7 11.4991 5.6702 1.4734 20 6 12.2852 4.7155 2.0613 21 1 13.2800 4.5280 1.6847 22 6 11.8036 3.9884 3.1412 23 7 10.7390 4.4057 3.7932 24 14 12.6664 2.4181 3.6694 25 1 13.7130 2.7414 4.6720 26 1 11.6769 1.4874 4.2695 27 1 13.2951 1.7769 2.4866 28 6 10.0358 5.5380 1.4718 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.3879 2.1185 0.0004 35 1 3.4863 3.5611 -0.8861 36 1 3.4784 3.5633 0.8939 37 1 5.7347 2.5357 0.9059 38 1 5.7433 2.5333 -0.8740 39 1 5.5267 5.0031 -0.8791 40 1 5.5181 5.0062 0.9008 41 1 7.5815 6.4981 0.0190 42 1 9.6676 7.0645 -1.5962 43 1 9.6985 7.8061 0.0215 44 1 11.9233 6.0966 -1.1809 45 1 11.9402 7.8727 -1.0567 46 1 14.0702 7.5608 0.3226 47 1 13.9984 6.6189 1.8309 48 1 13.8910 5.7912 0.2585 49 1 10.4027 3.8978 4.5481 50 1 9.5968 6.3292 2.0796 51 1 9.7564 4.5655 1.8769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132434378.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:26 Heat of formation + Delta-G solvation = -106.332374 kcal Electronic energy + Delta-G solvation = -28030.460226 eV Core-core repulsion = 24156.143331 eV Total energy + Delta-G solvation = -3874.316895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.02729 -40.63809 -39.23941 -36.40217 -35.98814 -35.19059 -34.64603 -32.36730 -31.79332 -31.58668 -29.27164 -27.64876 -26.65859 -24.53453 -23.94753 -23.06558 -22.07474 -21.37048 -21.25205 -20.74670 -18.36371 -18.32677 -17.63441 -17.31321 -17.14465 -16.85478 -16.59360 -16.31522 -15.79840 -15.44560 -15.35341 -15.03632 -14.96670 -14.62595 -14.36832 -14.26269 -14.11026 -13.62623 -13.43114 -13.10111 -12.87987 -12.82680 -12.72793 -12.70311 -12.66987 -12.54411 -12.41985 -12.36703 -12.29541 -12.14112 -11.97956 -11.71625 -11.65705 -11.39832 -11.12721 -10.97827 -10.66862 -10.54412 -10.10892 -9.99195 -8.61573 -7.87012 -5.32600 1.36779 1.42592 1.49044 1.65656 1.80129 2.16736 2.41320 2.51033 3.29656 3.65192 3.74330 3.90698 4.00938 4.07042 4.09418 4.11330 4.14738 4.19719 4.28041 4.40686 4.50159 4.61051 4.64276 4.65972 4.71214 4.72239 4.77240 4.85726 4.90850 4.97375 5.01255 5.03952 5.07879 5.18045 5.19976 5.25150 5.32742 5.37559 5.38855 5.50611 5.54512 5.56311 5.62353 5.69920 5.83172 6.40793 6.59094 6.75575 7.15395 7.31138 7.49194 7.90124 8.38773 9.17836 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.002543 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.238852 B =11007.064153 C =12532.040467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.106 3.894 3 N -0.719 5.719 4 C 0.499 3.501 5 O -0.599 6.599 6 C -0.125 4.125 7 C -0.089 4.089 8 C -0.122 4.122 9 C 0.493 3.507 10 O -0.599 6.599 11 N -0.709 5.709 12 C 0.129 3.871 13 H 0.042 0.958 14 C -0.105 4.105 15 C -0.119 4.119 16 C 0.153 3.847 17 H 0.024 0.976 18 C -0.129 4.129 19 N -0.604 5.604 20 C -0.249 4.249 21 H 0.073 0.927 22 C -0.055 4.055 23 N -0.932 5.932 24 Si 0.954 3.046 25 H -0.275 1.275 26 H -0.302 1.302 27 H -0.274 1.274 28 C 0.180 3.820 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.420 0.580 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.031 0.969 38 H 0.044 0.956 39 H 0.139 0.861 40 H 0.123 0.877 41 H 0.416 0.584 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.048 0.952 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.037 0.963 48 H 0.043 0.957 49 H 0.244 0.756 50 H 0.000 1.000 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.032 6.790 -12.014 25.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 N -0.373 5.373 4 C 0.287 3.713 5 O -0.480 6.480 6 C -0.164 4.164 7 C -0.128 4.128 8 C -0.161 4.161 9 C 0.282 3.718 10 O -0.479 6.479 11 N -0.362 5.362 12 C 0.022 3.978 13 H 0.061 0.939 14 C -0.143 4.143 15 C -0.158 4.158 16 C 0.048 3.952 17 H 0.041 0.959 18 C -0.187 4.187 19 N -0.328 5.328 20 C -0.380 4.380 21 H 0.090 0.910 22 C -0.250 4.250 23 N -0.579 5.579 24 Si 0.783 3.217 25 H -0.201 1.201 26 H -0.229 1.229 27 H -0.199 1.199 28 C 0.053 3.947 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.258 0.742 35 H 0.155 0.845 36 H 0.146 0.854 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.157 0.843 40 H 0.141 0.859 41 H 0.253 0.747 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.115 0.885 46 H 0.099 0.901 47 H 0.056 0.944 48 H 0.062 0.938 49 H 0.053 0.947 50 H 0.018 0.982 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -21.117 5.332 -11.882 24.810 hybrid contribution 0.288 -0.985 1.024 1.450 sum -20.830 4.347 -10.858 23.889 Atomic orbital electron populations 1.21936 0.91406 1.04109 1.03563 1.21348 0.96544 0.83023 1.00875 1.45992 1.06635 1.09653 1.74974 1.21488 0.82495 0.92744 0.74571 1.90745 1.57030 1.48715 1.51476 1.21681 0.94762 0.92102 1.07885 1.20956 0.94785 0.95484 1.01555 1.21686 0.88083 0.98697 1.07650 1.21727 0.92345 0.83124 0.74650 1.90749 1.72122 1.33691 1.51377 1.45915 1.06630 1.09010 1.74609 1.21447 0.79758 0.98748 0.97802 0.93919 1.21629 0.96317 0.95114 1.01253 1.21960 0.94890 1.02200 0.96797 1.20822 0.93409 0.88524 0.92483 0.95852 1.21731 0.94860 1.01227 1.00850 1.44321 1.01467 1.21962 1.65053 1.19439 0.99149 1.12014 1.07367 0.90976 1.25796 0.99487 1.02979 0.96746 1.70154 1.27144 1.39291 1.21281 0.85467 0.77628 0.80456 0.78165 1.20149 1.22851 1.19945 1.20756 0.83506 0.98541 0.91873 0.90941 0.90656 0.90171 0.93092 0.93506 0.74227 0.84523 0.85402 0.95040 0.93703 0.84322 0.85891 0.74691 0.89562 0.90583 0.93303 0.88499 0.90149 0.94389 0.93773 0.94726 0.98205 0.94496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.03 71.98 0.72 -0.33 16 2 C 0.11 1.61 6.39 86.38 0.55 2.16 16 3 N -0.72 -10.21 5.56 -463.07 -2.57 -12.78 16 4 C 0.50 11.30 7.83 87.66 0.69 11.99 16 5 O -0.60 -21.59 15.98 -3.03 -0.05 -21.64 16 6 C -0.13 -1.86 5.70 29.85 0.17 -1.69 16 7 C -0.09 -2.35 3.79 30.60 0.12 -2.24 16 8 C -0.12 -2.51 5.70 29.85 0.17 -2.34 16 9 C 0.49 17.26 7.80 87.65 0.68 17.95 16 10 O -0.60 -29.59 15.64 -3.04 -0.05 -29.64 16 11 N -0.71 -22.14 5.08 -442.16 -2.25 -24.39 16 12 C 0.13 5.12 2.61 45.07 0.12 5.24 16 13 H 0.04 2.03 7.58 -2.39 -0.02 2.01 16 14 C -0.11 -3.09 5.35 30.62 0.16 -2.93 16 15 C -0.12 -3.77 5.37 30.67 0.16 -3.60 16 16 C 0.15 6.19 3.50 44.98 0.16 6.35 16 17 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 18 C -0.13 -4.77 7.95 71.98 0.57 -4.20 16 19 N -0.60 -31.46 2.99 -675.23 -2.02 -33.48 16 20 C -0.25 -14.45 8.58 84.03 0.72 -13.73 16 21 H 0.07 4.04 6.23 -2.91 -0.02 4.02 16 22 C -0.05 -3.34 4.94 84.86 0.42 -2.92 16 23 N -0.93 -59.59 11.23 21.65 0.24 -59.35 16 24 Si 0.95 49.59 29.58 68.60 2.03 51.61 16 25 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.30 -16.13 7.11 99.48 0.71 -15.42 16 27 H -0.27 -13.86 7.11 99.48 0.71 -13.16 16 28 C 0.18 9.26 4.86 86.36 0.42 9.68 16 29 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.07 0.34 8.14 -2.39 -0.02 0.33 16 31 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.42 2.38 8.47 -92.71 -0.79 1.59 16 35 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.03 1.11 8.06 -2.39 -0.02 1.09 16 38 H 0.04 1.45 8.06 -2.39 -0.02 1.43 16 39 H 0.14 1.55 8.14 -2.39 -0.02 1.54 16 40 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.42 8.76 8.60 -92.71 -0.80 7.96 16 42 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.04 1.55 7.67 -2.38 -0.02 1.53 16 48 H 0.04 1.69 7.40 -2.39 -0.02 1.67 16 49 H 0.24 15.31 8.31 -92.70 -0.77 14.54 16 50 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 51 H 0.04 2.30 6.15 -2.39 -0.01 2.29 16 Total: -1.00 -94.67 404.56 0.51 -94.17 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -0.67 Total: 16.10 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: 5.84 Total: 19.39 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -6.59 Total: -129.99 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -0.10 Total: -51.27 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.03 Total: 51.61 kcal Total: -94.67 0.51 -94.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132434378.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.167 kcal (2) G-P(sol) polarization free energy of solvation -94.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds