Wall clock time and date at job start Fri Apr 10 2020 18:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46875 * 2 1 4 4 C 1.52997 * 109.47099 * 240.00057 * 2 1 3 5 5 C 1.53006 * 109.47025 * 174.99638 * 4 2 1 6 6 H 1.08998 * 109.46771 * 54.17385 * 5 4 2 7 7 C 1.52996 * 109.47353 * 294.16717 * 5 4 2 8 8 N 1.46500 * 109.46667 * 174.16734 * 5 4 2 9 9 C 1.34779 * 119.99644 * 206.04151 * 8 5 4 10 10 O 1.21280 * 120.00252 * 5.46362 * 9 8 5 11 11 C 1.50699 * 119.99737 * 185.46461 * 9 8 5 12 12 C 1.55236 * 110.58335 * 285.65218 * 11 9 8 13 13 C 1.54886 * 102.59153 * 203.34002 * 12 11 9 14 14 C 1.54267 * 104.31113 * 37.93453 * 13 12 11 15 15 C 1.53875 * 106.59985 * 336.32490 * 14 13 12 16 16 N 1.46898 * 109.47168 * 120.00247 * 2 1 3 17 17 C 1.46905 * 110.99751 * 276.28934 * 16 2 1 18 18 C 1.50705 * 109.47024 * 185.38160 * 17 16 2 19 19 O 1.21292 * 119.99919 * 5.29910 * 18 17 16 20 20 N 1.34770 * 120.00046 * 185.29745 * 18 17 16 21 21 C 1.37094 * 120.00075 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00311 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00216 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00062 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00108 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47330 * 60.00261 * 25 23 21 27 27 H 1.48498 * 109.46885 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47260 * 299.99797 * 25 23 21 29 29 H 1.08997 * 109.47016 * 59.99696 * 1 2 3 30 30 H 1.08996 * 109.47037 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46874 * 299.99973 * 1 2 3 32 32 H 1.09002 * 109.47114 * 55.00068 * 4 2 1 33 33 H 1.09003 * 109.47490 * 295.00102 * 4 2 1 34 34 H 1.09000 * 109.47026 * 300.00323 * 7 5 4 35 35 H 1.09003 * 109.46881 * 59.99743 * 7 5 4 36 36 H 1.08997 * 109.47454 * 179.97438 * 7 5 4 37 37 H 0.97000 * 120.00573 * 26.04534 * 8 5 4 38 38 H 1.08996 * 110.43765 * 48.24588 * 11 9 8 39 39 H 1.09006 * 110.89511 * 85.04780 * 12 11 9 40 40 H 1.08993 * 110.76693 * 321.57785 * 12 11 9 41 41 H 1.09001 * 110.48699 * 279.19420 * 13 12 11 42 42 H 1.09003 * 110.48562 * 156.68018 * 13 12 11 43 43 H 1.09003 * 110.03141 * 95.61011 * 14 13 12 44 44 H 1.08996 * 110.03066 * 216.98904 * 14 13 12 45 45 H 1.08990 * 110.03651 * 119.28400 * 15 14 13 46 46 H 1.09001 * 110.03206 * 240.66871 * 15 14 13 47 47 H 1.00901 * 110.99908 * 40.23662 * 16 2 1 48 48 H 1.08999 * 109.47029 * 305.37886 * 17 16 2 49 49 H 1.08998 * 109.47193 * 65.37772 * 17 16 2 50 50 H 0.97005 * 120.00298 * 359.97438 * 20 18 17 51 51 H 0.96999 * 120.00349 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 1 3.9947 -0.9785 -0.3810 7 6 3.9642 0.8491 -1.5212 8 7 4.0646 -1.4191 -2.4304 9 6 5.3185 -1.9124 -2.3972 10 8 5.9985 -1.7739 -1.4026 11 6 5.8754 -2.6359 -3.5961 12 6 5.2501 -4.0515 -3.7183 13 6 6.3118 -4.8195 -4.5440 14 6 7.6614 -4.2907 -4.0158 15 6 7.3839 -2.9023 -3.4131 16 7 2.0197 -0.6925 1.1994 17 6 2.0535 0.2148 2.3542 18 6 2.6825 -0.4899 3.5285 19 8 3.1518 -1.5997 3.3894 20 7 2.7237 0.1130 4.7331 21 6 3.2963 -0.5278 5.8012 22 1 3.7149 -1.5156 5.6773 23 6 3.3392 0.0940 7.0431 24 7 2.8304 1.2962 7.1939 25 14 4.1202 -0.7789 8.4983 26 1 5.5440 -1.0713 8.1942 27 1 4.0386 0.0908 9.6991 28 1 3.3984 -2.0503 8.7585 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6054 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 3.5343 1.2143 -2.4539 35 1 3.5923 1.4487 -0.6904 36 1 5.0505 0.9262 -1.5667 37 1 3.4933 -1.5977 -3.1936 38 1 5.6971 -2.0606 -4.5045 39 1 4.3002 -4.0121 -4.2517 40 1 5.1236 -4.5043 -2.7350 41 1 6.2040 -4.5968 -5.6055 42 1 6.2279 -5.8922 -4.3697 43 1 8.0501 -4.9600 -3.2484 44 1 8.3758 -4.2071 -4.8347 45 1 7.6380 -2.8978 -2.3533 46 1 7.9642 -2.1442 -3.9391 47 1 1.4622 -1.5098 1.3979 48 1 2.6399 1.0991 2.1045 49 1 1.0373 0.5135 2.6115 50 1 2.3487 1.0008 4.8443 51 1 2.8607 1.7305 8.0607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133465378.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:49 Heat of formation + Delta-G solvation = -101.331360 kcal Electronic energy + Delta-G solvation = -27949.320343 eV Core-core repulsion = 24075.220308 eV Total energy + Delta-G solvation = -3874.100035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.19409 -38.53585 -37.70716 -36.90546 -35.06471 -33.82333 -31.88211 -31.13715 -30.27731 -29.01625 -28.81673 -26.82393 -26.18867 -23.95564 -23.07409 -21.30877 -20.65415 -20.36426 -19.63539 -19.14497 -17.84104 -17.50578 -16.19333 -15.92416 -15.81060 -15.49472 -15.12578 -14.88957 -14.49803 -14.39291 -13.91752 -13.81507 -13.72914 -13.57888 -13.39167 -13.04997 -12.85660 -12.38829 -12.28093 -12.12981 -11.96258 -11.70415 -11.52070 -11.50783 -11.40672 -11.37480 -11.33828 -11.17608 -11.02298 -10.96732 -10.77978 -10.65194 -10.61254 -10.39410 -10.15329 -9.65021 -9.43431 -9.00295 -8.40369 -7.94877 -7.88755 -6.35733 -3.76143 2.68864 3.17107 3.24922 3.29668 3.34822 3.98958 4.13509 4.25555 4.33625 4.36800 4.51525 4.74753 4.89464 5.02724 5.07410 5.09983 5.19696 5.23307 5.26454 5.28842 5.30660 5.32486 5.39631 5.41031 5.46816 5.55191 5.60879 5.67761 5.69507 5.76420 5.80056 5.83881 5.87995 5.91478 5.96438 6.05635 6.06013 6.12221 6.19898 6.28394 6.35628 6.44056 6.62497 7.28218 7.54641 7.60986 7.69914 8.12960 8.31368 8.68640 9.24702 9.61453 10.13886 10.82154 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.012498 B = 0.002507 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.753888 B =11164.980098 C =12693.620902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.083 3.917 3 H 0.082 0.918 4 C -0.110 4.110 5 C 0.139 3.861 6 H 0.113 0.887 7 C -0.160 4.160 8 N -0.728 5.728 9 C 0.516 3.484 10 O -0.528 6.528 11 C -0.114 4.114 12 C -0.113 4.113 13 C -0.123 4.123 14 C -0.125 4.125 15 C -0.116 4.116 16 N -0.660 5.660 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.578 6.578 20 N -0.567 5.567 21 C -0.297 4.297 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.904 5.904 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.393 0.607 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.087 0.913 46 H 0.064 0.936 47 H 0.347 0.653 48 H 0.085 0.915 49 H 0.042 0.958 50 H 0.391 0.609 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.302 -3.348 -26.152 26.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.028 4.028 3 H 0.100 0.900 4 C -0.149 4.149 5 C 0.036 3.964 6 H 0.131 0.869 7 C -0.218 4.218 8 N -0.379 5.379 9 C 0.302 3.698 10 O -0.404 6.404 11 C -0.136 4.136 12 C -0.150 4.150 13 C -0.161 4.161 14 C -0.162 4.162 15 C -0.153 4.153 16 N -0.291 5.291 17 C -0.081 4.081 18 C 0.227 3.773 19 O -0.461 6.461 20 N -0.204 5.204 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.546 5.546 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.227 0.773 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.106 0.894 46 H 0.083 0.917 47 H 0.167 0.833 48 H 0.103 0.897 49 H 0.060 0.940 50 H 0.224 0.776 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.195 -3.764 -25.477 25.755 hybrid contribution -1.204 0.354 0.651 1.414 sum -1.009 -3.410 -24.826 25.079 Atomic orbital electron populations 1.22533 0.97390 1.02195 1.02147 1.21612 0.92232 0.98315 0.90651 0.89991 1.21796 0.94478 1.01456 0.97159 1.21018 0.93720 0.90371 0.91325 0.86903 1.22185 1.01838 0.96417 1.01383 1.46116 1.14635 1.54189 1.22939 1.20515 0.81727 0.78469 0.89117 1.90746 1.58683 1.57495 1.33460 1.22234 0.97423 0.97102 0.96808 1.22533 0.98164 0.93217 1.01136 1.22349 0.94558 0.99810 0.99360 1.22142 0.97284 0.96570 1.00230 1.22103 0.93141 0.96629 1.03473 1.60132 1.58189 1.08435 1.02368 1.21696 0.99238 0.96098 0.91098 1.19844 0.85691 0.87908 0.83894 1.90540 1.50944 1.20568 1.84046 1.41865 1.52768 1.18230 1.07533 1.19651 1.34103 1.02052 0.86867 0.88031 1.25242 0.97784 0.95975 0.98998 1.69605 1.45890 1.13571 1.25511 0.85931 0.79708 0.78813 0.79849 1.19878 1.21029 1.19969 0.92291 0.92402 0.92374 0.91736 0.91259 0.93206 0.91368 0.92585 0.77343 0.88751 0.91001 0.90684 0.91538 0.91411 0.91585 0.91848 0.89405 0.91697 0.83333 0.89693 0.94004 0.77553 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 9.16 37.16 0.34 -1.46 16 2 C 0.08 0.95 2.46 -67.72 -0.17 0.79 16 3 H 0.08 0.93 5.97 -51.93 -0.31 0.62 16 4 C -0.11 -1.11 4.54 -26.73 -0.12 -1.23 16 5 C 0.14 1.72 2.66 -67.93 -0.18 1.54 16 6 H 0.11 1.97 6.93 -51.93 -0.36 1.61 16 7 C -0.16 -1.85 9.27 37.16 0.34 -1.50 16 8 N -0.73 -7.62 5.06 -53.81 -0.27 -7.89 16 9 C 0.52 6.58 7.09 -10.98 -0.08 6.50 16 10 O -0.53 -9.51 15.03 5.56 0.08 -9.42 16 11 C -0.11 -1.03 3.25 -89.92 -0.29 -1.33 16 12 C -0.11 -0.87 6.35 -24.55 -0.16 -1.03 16 13 C -0.12 -0.84 6.82 -25.07 -0.17 -1.01 16 14 C -0.12 -0.98 6.80 -25.61 -0.17 -1.16 16 15 C -0.12 -1.13 6.25 -25.61 -0.16 -1.29 16 16 N -0.66 -10.44 5.11 -107.99 -0.55 -10.99 16 17 C 0.05 0.91 5.98 -4.97 -0.03 0.88 16 18 C 0.44 10.71 7.82 -10.99 -0.09 10.62 16 19 O -0.58 -16.26 15.96 5.55 0.09 -16.18 16 20 N -0.57 -14.75 5.29 -10.96 -0.06 -14.81 16 21 C -0.30 -8.52 9.68 -14.94 -0.14 -8.67 16 22 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -25.11 13.05 55.50 0.72 -24.39 16 25 Si 0.93 21.66 29.55 -169.99 -5.02 16.63 16 26 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 31 H 0.06 0.61 7.48 -51.93 -0.39 0.22 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.79 6.49 -51.93 -0.34 0.46 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.39 2.79 8.62 -40.82 -0.35 2.44 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.72 8.06 -51.93 -0.42 0.30 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 1.12 6.76 -51.93 -0.35 0.77 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.35 5.66 8.46 -39.29 -0.33 5.33 16 48 H 0.08 1.41 7.93 -51.93 -0.41 1.00 16 49 H 0.04 0.67 7.49 -51.93 -0.39 0.28 16 50 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 51 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 407.39 15.07 6.14 6.14 Total: -1.00 -34.41 407.39 -9.02 -43.43 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -8.98 Total: 15.34 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -1.17 Total: 2.14 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.16 Total: -58.08 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: 0.17 Total: -25.60 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.41 -9.02 -43.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133465378.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.904 kcal (2) G-P(sol) polarization free energy of solvation -34.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds