Wall clock time and date at job start Fri Apr 10 2020 18:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46875 * 2 1 4 4 C 1.52997 * 109.47099 * 240.00057 * 2 1 3 5 5 C 1.53006 * 109.47025 * 174.99638 * 4 2 1 6 6 H 1.08998 * 109.46771 * 54.17385 * 5 4 2 7 7 C 1.52996 * 109.47353 * 294.16717 * 5 4 2 8 8 N 1.46500 * 109.46667 * 174.16734 * 5 4 2 9 9 C 1.34779 * 119.99644 * 206.04151 * 8 5 4 10 10 O 1.21280 * 120.00252 * 5.46362 * 9 8 5 11 11 C 1.50699 * 119.99737 * 185.46461 * 9 8 5 12 12 C 1.55236 * 110.58335 * 285.65218 * 11 9 8 13 13 C 1.54886 * 102.59153 * 203.34002 * 12 11 9 14 14 C 1.54267 * 104.31113 * 37.93453 * 13 12 11 15 15 C 1.53875 * 106.59985 * 336.32490 * 14 13 12 16 16 N 1.46898 * 109.47168 * 120.00247 * 2 1 3 17 17 C 1.46905 * 110.99751 * 276.28934 * 16 2 1 18 18 C 1.50705 * 109.47024 * 185.38160 * 17 16 2 19 19 O 1.21292 * 119.99919 * 5.29910 * 18 17 16 20 20 N 1.34770 * 120.00046 * 185.29745 * 18 17 16 21 21 C 1.37094 * 120.00075 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00311 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00216 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00062 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00108 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47330 * 60.00261 * 25 23 21 27 27 H 1.48498 * 109.46885 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47260 * 299.99797 * 25 23 21 29 29 H 1.08997 * 109.47016 * 59.99696 * 1 2 3 30 30 H 1.08996 * 109.47037 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46874 * 299.99973 * 1 2 3 32 32 H 1.09002 * 109.47114 * 55.00068 * 4 2 1 33 33 H 1.09003 * 109.47490 * 295.00102 * 4 2 1 34 34 H 1.09000 * 109.47026 * 300.00323 * 7 5 4 35 35 H 1.09003 * 109.46881 * 59.99743 * 7 5 4 36 36 H 1.08997 * 109.47454 * 179.97438 * 7 5 4 37 37 H 0.97000 * 120.00573 * 26.04534 * 8 5 4 38 38 H 1.08996 * 110.43765 * 48.24588 * 11 9 8 39 39 H 1.09006 * 110.89511 * 85.04780 * 12 11 9 40 40 H 1.08993 * 110.76693 * 321.57785 * 12 11 9 41 41 H 1.09001 * 110.48699 * 279.19420 * 13 12 11 42 42 H 1.09003 * 110.48562 * 156.68018 * 13 12 11 43 43 H 1.09003 * 110.03141 * 95.61011 * 14 13 12 44 44 H 1.08996 * 110.03066 * 216.98904 * 14 13 12 45 45 H 1.08990 * 110.03651 * 119.28400 * 15 14 13 46 46 H 1.09001 * 110.03206 * 240.66871 * 15 14 13 47 47 H 1.00901 * 110.99908 * 40.23662 * 16 2 1 48 48 H 1.08999 * 109.47029 * 305.37886 * 17 16 2 49 49 H 1.08998 * 109.47193 * 65.37772 * 17 16 2 50 50 H 0.97005 * 120.00298 * 359.97438 * 20 18 17 51 51 H 0.96999 * 120.00349 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 1 3.9947 -0.9785 -0.3810 7 6 3.9642 0.8491 -1.5212 8 7 4.0646 -1.4191 -2.4304 9 6 5.3185 -1.9124 -2.3972 10 8 5.9985 -1.7739 -1.4026 11 6 5.8754 -2.6359 -3.5961 12 6 5.2501 -4.0515 -3.7183 13 6 6.3118 -4.8195 -4.5440 14 6 7.6614 -4.2907 -4.0158 15 6 7.3839 -2.9023 -3.4131 16 7 2.0197 -0.6925 1.1994 17 6 2.0535 0.2148 2.3542 18 6 2.6825 -0.4899 3.5285 19 8 3.1518 -1.5997 3.3894 20 7 2.7237 0.1130 4.7331 21 6 3.2963 -0.5278 5.8012 22 1 3.7149 -1.5156 5.6773 23 6 3.3392 0.0940 7.0431 24 7 2.8304 1.2962 7.1939 25 14 4.1202 -0.7789 8.4983 26 1 5.5440 -1.0713 8.1942 27 1 4.0386 0.0908 9.6991 28 1 3.3984 -2.0503 8.7585 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6054 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 3.5343 1.2143 -2.4539 35 1 3.5923 1.4487 -0.6904 36 1 5.0505 0.9262 -1.5667 37 1 3.4933 -1.5977 -3.1936 38 1 5.6971 -2.0606 -4.5045 39 1 4.3002 -4.0121 -4.2517 40 1 5.1236 -4.5043 -2.7350 41 1 6.2040 -4.5968 -5.6055 42 1 6.2279 -5.8922 -4.3697 43 1 8.0501 -4.9600 -3.2484 44 1 8.3758 -4.2071 -4.8347 45 1 7.6380 -2.8978 -2.3533 46 1 7.9642 -2.1442 -3.9391 47 1 1.4622 -1.5098 1.3979 48 1 2.6399 1.0991 2.1045 49 1 1.0373 0.5135 2.6115 50 1 2.3487 1.0008 4.8443 51 1 2.8607 1.7305 8.0607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133465378.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:48 Heat of formation + Delta-G solvation = -127.071018 kcal Electronic energy + Delta-G solvation = -27950.436498 eV Core-core repulsion = 24075.220308 eV Total energy + Delta-G solvation = -3875.216190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.16173 -40.21803 -38.82896 -37.89250 -36.28351 -35.84122 -33.34644 -32.89548 -31.32000 -29.73726 -29.51989 -27.96702 -27.62328 -25.71854 -24.01342 -22.17038 -21.37426 -21.33758 -21.10952 -20.42864 -19.91955 -18.43391 -17.69041 -17.10222 -16.85511 -16.58948 -16.42629 -16.21783 -15.99016 -15.70358 -15.29196 -15.20649 -14.75615 -14.53188 -14.31992 -14.29344 -14.03476 -13.62952 -13.54527 -13.31260 -13.10333 -13.03971 -12.84331 -12.74115 -12.51174 -12.44555 -12.23132 -12.15002 -12.09201 -12.06715 -11.96584 -11.71229 -11.67484 -11.58696 -11.51424 -11.29721 -10.70341 -10.34605 -10.02426 -10.00412 -9.21050 -8.47918 -5.96637 1.37703 1.39005 1.50249 1.69894 2.05530 2.27306 2.28348 2.94866 3.18938 3.54854 3.56103 3.65777 3.82576 3.88275 4.05592 4.19154 4.26871 4.33328 4.41734 4.46261 4.47235 4.48575 4.53327 4.55648 4.60098 4.61143 4.61617 4.78741 4.80552 4.89304 4.95452 4.96907 5.01402 5.09038 5.11215 5.21184 5.27022 5.32440 5.35562 5.38158 5.38804 5.41407 5.48366 5.67917 5.92064 6.16698 6.47080 6.60048 6.68035 7.11946 7.40093 7.55844 8.12609 8.69371 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.012498 B = 0.002507 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.753888 B =11164.980098 C =12693.620902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 H 0.087 0.913 4 C -0.099 4.099 5 C 0.140 3.860 6 H 0.054 0.946 7 C -0.153 4.153 8 N -0.711 5.711 9 C 0.508 3.492 10 O -0.594 6.594 11 C -0.106 4.106 12 C -0.110 4.110 13 C -0.117 4.117 14 C -0.124 4.124 15 C -0.121 4.121 16 N -0.679 5.679 17 C 0.069 3.931 18 C 0.435 3.565 19 O -0.623 6.623 20 N -0.575 5.575 21 C -0.335 4.335 22 H 0.075 0.925 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.275 1.275 27 H -0.267 1.267 28 H -0.271 1.271 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.028 0.972 37 H 0.415 0.585 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.047 0.953 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.052 0.948 44 H 0.080 0.920 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.342 0.658 48 H 0.099 0.901 49 H 0.068 0.932 50 H 0.396 0.604 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.065 -2.753 -28.939 29.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.028 4.028 3 H 0.106 0.894 4 C -0.138 4.138 5 C 0.036 3.964 6 H 0.073 0.927 7 C -0.212 4.212 8 N -0.362 5.362 9 C 0.296 3.704 10 O -0.474 6.474 11 C -0.128 4.128 12 C -0.148 4.148 13 C -0.155 4.155 14 C -0.162 4.162 15 C -0.159 4.159 16 N -0.310 5.310 17 C -0.064 4.064 18 C 0.223 3.777 19 O -0.509 6.509 20 N -0.213 5.213 21 C -0.465 4.465 22 H 0.093 0.907 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.200 1.200 27 H -0.191 1.191 28 H -0.196 1.196 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.252 0.748 38 H 0.147 0.853 39 H 0.119 0.881 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.160 0.840 48 H 0.117 0.883 49 H 0.086 0.914 50 H 0.230 0.770 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.626 -3.140 -28.316 28.536 hybrid contribution -0.642 0.182 1.487 1.630 sum -2.269 -2.958 -26.829 27.087 Atomic orbital electron populations 1.22445 0.95397 1.02559 1.03092 1.21753 0.93753 0.98234 0.89061 0.89450 1.21755 0.92355 1.01658 0.98005 1.20826 0.95200 0.90809 0.89589 0.92740 1.22120 1.00246 0.95807 1.02978 1.45959 1.14229 1.53018 1.23040 1.21280 0.81848 0.77907 0.89374 1.90726 1.60454 1.60048 1.36146 1.22299 0.96511 0.97894 0.96050 1.22557 0.99905 0.92014 1.00356 1.22357 0.92921 0.99849 1.00340 1.22151 0.98701 0.94973 1.00356 1.22112 0.94233 0.98390 1.01162 1.60115 1.59431 1.08538 1.02960 1.21510 0.99972 0.95768 0.89135 1.21034 0.84354 0.87448 0.84862 1.90505 1.52666 1.22823 1.84928 1.41939 1.53074 1.18426 1.07843 1.19601 1.36270 1.01884 0.88709 0.90706 1.26027 0.97666 0.96644 1.00914 1.69660 1.45751 1.14181 1.26487 0.85012 0.78484 0.78060 0.76909 1.20025 1.19138 1.19600 0.89615 0.92359 0.93119 0.87670 0.91513 0.89877 0.91598 0.95252 0.74788 0.85268 0.88093 0.93456 0.89139 0.90939 0.92876 0.90093 0.93524 0.90854 0.83963 0.88280 0.91442 0.76978 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 9.16 71.98 0.66 -2.25 16 2 C 0.08 1.72 2.46 44.91 0.11 1.83 16 3 H 0.09 1.77 5.97 -2.38 -0.01 1.76 16 4 C -0.10 -1.76 4.54 30.60 0.14 -1.62 16 5 C 0.14 3.44 2.66 44.99 0.12 3.56 16 6 H 0.05 2.03 6.93 -2.39 -0.02 2.01 16 7 C -0.15 -3.41 9.27 71.98 0.67 -2.74 16 8 N -0.71 -14.22 5.06 -442.53 -2.24 -16.46 16 9 C 0.51 13.32 7.09 87.66 0.62 13.95 16 10 O -0.59 -23.32 15.03 -3.03 -0.05 -23.36 16 11 C -0.11 -1.82 3.25 -10.34 -0.03 -1.85 16 12 C -0.11 -1.54 6.35 32.01 0.20 -1.33 16 13 C -0.12 -1.33 6.82 31.67 0.22 -1.11 16 14 C -0.12 -1.87 6.80 31.32 0.21 -1.66 16 15 C -0.12 -2.44 6.25 31.32 0.20 -2.24 16 16 N -0.68 -21.60 5.11 -495.56 -2.53 -24.13 16 17 C 0.07 2.44 5.98 85.56 0.51 2.95 16 18 C 0.44 21.91 7.82 87.66 0.69 22.60 16 19 O -0.62 -36.97 15.96 -3.07 -0.05 -37.02 16 20 N -0.58 -30.94 5.29 -306.99 -1.62 -32.56 16 21 C -0.34 -19.93 9.68 84.04 0.81 -19.12 16 22 H 0.07 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 24 N -0.92 -51.07 13.05 21.66 0.28 -50.78 16 25 Si 0.99 44.69 29.55 68.60 2.03 46.72 16 26 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 31 H 0.05 0.93 7.48 -2.39 -0.02 0.91 16 32 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.48 6.49 -2.39 -0.02 1.46 16 36 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.42 4.65 8.62 -92.71 -0.80 3.85 16 38 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.05 0.92 8.06 -2.39 -0.02 0.90 16 41 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.05 1.33 6.76 -2.39 -0.02 1.31 16 46 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.34 11.33 8.46 -89.69 -0.76 10.58 16 48 H 0.10 3.24 7.93 -2.39 -0.02 3.23 16 49 H 0.07 2.06 7.49 -2.39 -0.02 2.04 16 50 H 0.40 20.08 7.90 -92.70 -0.73 19.35 16 51 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -81.76 407.39 0.06 -81.70 By element: Atomic # 1 Polarization: 46.55 SS G_CDS: -1.35 Total: 45.20 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 5.59 Total: 10.71 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -6.11 Total: -123.94 kcal Atomic # 8 Polarization: -60.29 SS G_CDS: -0.09 Total: -60.39 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -81.76 0.06 -81.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133465378.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.374 kcal (2) G-P(sol) polarization free energy of solvation -81.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds