Wall clock time and date at job start Fri Apr 10 2020 18:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 110.65681 * 2 1 4 4 C 1.38268 * 119.93974 * 92.64887 * 3 2 1 5 5 C 1.38148 * 120.05288 * 179.72509 * 4 3 2 6 6 C 1.38739 * 119.94251 * 0.54301 * 5 4 3 7 7 O 1.35897 * 120.05631 * 179.74898 * 6 5 4 8 8 C 1.42908 * 116.99907 * 359.97438 * 7 6 5 9 9 F 1.39901 * 109.46758 * 299.99820 * 8 7 6 10 10 F 1.39905 * 109.46976 * 59.99869 * 8 7 6 11 11 C 1.38732 * 119.88863 * 359.72652 * 6 5 4 12 12 C 1.38141 * 119.94543 * 0.02562 * 11 6 5 13 13 N 1.47316 * 110.59240 * 237.08808 * 2 1 3 14 14 C 1.34527 * 106.61904 * 241.24885 * 13 2 1 15 15 O 1.21527 * 123.77113 * 180.20682 * 14 13 2 16 16 N 1.33787 * 112.45795 * 0.38577 * 14 13 2 17 17 C 1.37512 * 124.17848 * 179.85731 * 16 14 13 18 18 H 1.08001 * 120.00037 * 145.33991 * 17 16 14 19 19 C 1.38893 * 120.00115 * 325.34380 * 17 16 14 20 20 N 1.31384 * 120.00018 * 147.41789 * 19 17 16 21 21 Si 1.86799 * 120.00106 * 327.41327 * 19 17 16 22 22 H 1.48506 * 109.46992 * 270.00347 * 21 19 17 23 23 H 1.48490 * 109.47264 * 150.00212 * 21 19 17 24 24 H 1.48501 * 109.46845 * 29.99793 * 21 19 17 25 25 C 1.34769 * 111.64510 * 359.59809 * 16 14 13 26 26 O 1.21236 * 127.16002 * 180.19206 * 25 16 14 27 27 H 1.09002 * 109.46314 * 297.78350 * 1 2 3 28 28 H 1.09000 * 109.47184 * 57.78079 * 1 2 3 29 29 H 1.08998 * 109.47552 * 177.78969 * 1 2 3 30 30 H 1.07991 * 119.97472 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.03322 * 180.26891 * 5 4 3 32 32 H 1.09000 * 109.46716 * 179.97438 * 8 7 6 33 33 H 1.07997 * 120.02673 * 180.02562 * 11 6 5 34 34 H 1.07998 * 119.97272 * 180.02562 * 12 11 6 35 35 H 0.96999 * 126.68783 * 61.51608 * 13 2 1 36 36 H 0.96995 * 120.00044 * 354.59690 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0616 1.4101 0.0000 4 6 2.3569 2.0363 1.1969 5 6 2.8497 3.3268 1.1993 6 6 3.0377 3.9986 0.0001 7 8 3.5175 5.2701 0.0001 8 6 3.8069 5.8543 1.2718 9 9 2.6407 5.8926 2.0436 10 9 4.7754 5.0869 1.9279 11 6 2.7354 3.3701 -1.1992 12 6 2.2476 2.0776 -1.1965 13 7 2.0482 -0.7493 -1.1577 14 6 2.7639 -1.7753 -0.6629 15 8 3.3367 -2.5947 -1.3539 16 7 2.7715 -1.7950 0.6748 17 6 3.4259 -2.7399 1.4297 18 1 3.8761 -2.4617 2.3712 19 6 3.5079 -4.0519 0.9815 20 7 4.5647 -4.7787 1.2666 21 14 2.1157 -4.7833 -0.0266 22 1 1.1268 -5.4174 0.8819 23 1 2.6611 -5.8054 -0.9555 24 1 1.4523 -3.7084 -0.8074 25 6 2.0634 -0.7711 1.1911 26 8 1.8886 -0.5196 2.3641 27 1 -0.3632 0.4791 0.9092 28 1 -0.3633 0.5479 -0.8694 29 1 -0.3634 -1.0268 -0.0396 30 1 2.2059 1.5146 2.1303 31 1 3.0843 3.8141 2.1342 32 1 4.1821 6.8676 1.1291 33 1 2.8812 3.8908 -2.1340 34 1 2.0126 1.5877 -2.1298 35 1 1.9047 -0.5410 -2.0941 36 1 5.3211 -4.3769 1.7219 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003464580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:02 Heat of formation + Delta-G solvation = -142.562455 kcal Electronic energy + Delta-G solvation = -28260.992938 eV Core-core repulsion = 23768.799527 eV Total energy + Delta-G solvation = -4492.193411 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.091 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.61056 -47.60243 -41.85621 -40.02563 -38.03961 -37.31842 -35.47298 -34.45609 -32.28549 -31.24733 -30.71147 -29.11442 -26.43533 -25.73254 -23.81994 -23.08299 -22.36340 -21.20339 -19.73904 -19.21964 -18.55549 -18.17305 -17.99745 -17.21356 -16.57542 -16.24705 -15.70199 -15.10846 -14.85522 -14.74564 -14.57573 -14.36438 -14.21087 -14.11308 -13.92456 -13.76125 -13.58240 -13.40222 -13.11773 -12.92324 -12.89895 -12.36454 -12.26967 -12.17520 -11.89773 -11.45174 -11.11681 -10.88521 -10.31368 -10.04720 -9.53451 -9.33645 -9.16255 -9.08615 -8.82368 -8.41288 -8.26359 -6.98548 -4.30542 1.13894 1.27092 2.28846 2.45889 3.16874 3.19421 3.42264 3.44341 3.55776 3.57327 3.99298 4.05445 4.13241 4.34653 4.44739 4.51110 4.65977 4.72425 4.83204 5.03424 5.10942 5.22759 5.32463 5.49439 5.67175 5.72002 5.92706 6.01107 6.12751 6.23466 6.32506 6.41308 6.52941 6.93852 7.38676 7.56075 7.79110 7.98700 8.52870 8.64931 9.00790 9.48914 10.41660 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.022270 B = 0.003764 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.999331 B = 7436.397886 C = 7766.428900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.160 3.840 3 C -0.102 4.102 4 C -0.067 4.067 5 C -0.186 4.186 6 C 0.102 3.898 7 O -0.322 6.322 8 C 0.411 3.589 9 F -0.199 7.199 10 F -0.197 7.197 11 C -0.136 4.136 12 C -0.067 4.067 13 N -0.734 5.734 14 C 0.681 3.319 15 O -0.542 6.542 16 N -0.406 5.406 17 C -0.452 4.452 18 H 0.102 0.898 19 C 0.067 3.933 20 N -0.830 5.830 21 Si 1.069 2.931 22 H -0.296 1.296 23 H -0.279 1.279 24 H -0.286 1.286 25 C 0.484 3.516 26 O -0.499 6.499 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.152 0.848 31 H 0.134 0.866 32 H 0.180 0.820 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.426 0.574 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.886 21.095 -4.468 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.068 3.932 3 C -0.104 4.104 4 C -0.085 4.085 5 C -0.204 4.204 6 C 0.059 3.941 7 O -0.240 6.240 8 C 0.321 3.679 9 F -0.180 7.180 10 F -0.179 7.179 11 C -0.154 4.154 12 C -0.086 4.086 13 N -0.399 5.399 14 C 0.385 3.615 15 O -0.418 6.418 16 N -0.138 5.138 17 C -0.575 4.575 18 H 0.120 0.880 19 C -0.149 4.149 20 N -0.458 5.458 21 Si 0.897 3.103 22 H -0.224 1.224 23 H -0.204 1.204 24 H -0.212 1.212 25 C 0.273 3.727 26 O -0.376 6.376 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.169 0.831 31 H 0.152 0.848 32 H 0.197 0.803 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.268 0.732 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.013 19.355 -4.940 20.861 hybrid contribution 0.649 1.539 0.637 1.788 sum -5.364 20.895 -4.304 21.997 Atomic orbital electron populations 1.21915 0.90403 1.03583 1.03605 1.20122 0.96323 0.89531 0.87222 1.19581 1.02492 0.94362 0.93925 1.21360 0.94206 0.93535 0.99442 1.21511 1.05203 0.96936 0.96794 1.18897 0.97180 0.82913 0.95124 1.86585 1.79581 1.28009 1.29848 1.23336 0.75027 0.94152 0.75392 1.93104 1.51251 1.97032 1.76652 1.93124 1.63743 1.78997 1.82028 1.20303 1.04075 0.95197 0.95857 1.20671 0.97254 0.93018 0.97618 1.45638 1.56588 1.29876 1.07828 1.16164 0.79903 0.81992 0.83458 1.90778 1.48501 1.41152 1.61322 1.42107 1.41262 1.25207 1.05195 1.20309 1.39777 0.89653 1.07811 0.88034 1.26333 0.99879 0.92530 0.96134 1.70804 1.02922 1.40766 1.31350 0.83616 0.74949 0.76013 0.75711 1.22415 1.20426 1.21211 1.20455 0.79341 0.84048 0.88878 1.90561 1.59361 1.71034 1.16599 0.90136 0.91024 0.91023 0.83064 0.84801 0.80330 0.84715 0.85042 0.73154 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.97 37.16 0.33 -1.53 16 2 C 0.16 2.72 1.16 -133.24 -0.15 2.57 16 3 C -0.10 -1.57 4.89 -104.60 -0.51 -2.08 16 4 C -0.07 -1.08 9.17 -39.60 -0.36 -1.44 16 5 C -0.19 -2.67 8.26 -39.43 -0.33 -2.99 16 6 C 0.10 1.32 6.48 -39.21 -0.25 1.07 16 7 O -0.32 -3.46 10.43 -19.42 -0.20 -3.66 16 8 C 0.41 3.37 5.98 101.05 0.60 3.97 16 9 F -0.20 -1.96 15.58 2.25 0.04 -1.92 16 10 F -0.20 -2.12 15.58 2.25 0.04 -2.09 16 11 C -0.14 -1.62 9.99 -39.43 -0.39 -2.01 16 12 C -0.07 -0.85 9.34 -39.61 -0.37 -1.22 16 13 N -0.73 -12.94 5.36 -54.02 -0.29 -13.23 16 14 C 0.68 16.17 6.50 -88.02 -0.57 15.60 16 15 O -0.54 -14.44 13.94 5.34 0.07 -14.37 16 16 N -0.41 -10.38 2.36 -65.57 -0.16 -10.53 16 17 C -0.45 -13.02 9.74 -14.76 -0.14 -13.17 16 18 H 0.10 3.08 8.06 -52.49 -0.42 2.66 16 19 C 0.07 1.94 4.78 -17.50 -0.08 1.86 16 20 N -0.83 -24.63 13.69 55.49 0.76 -23.87 16 21 Si 1.07 27.14 26.41 -169.99 -4.49 22.65 16 22 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 24 H -0.29 -6.98 5.49 56.52 0.31 -6.66 16 25 C 0.48 10.88 6.41 -10.55 -0.07 10.82 16 26 O -0.50 -11.90 15.67 5.59 0.09 -11.81 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.15 2.69 5.62 -52.49 -0.29 2.39 16 31 H 0.13 1.82 5.10 -52.49 -0.27 1.55 16 32 H 0.18 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.13 1.31 7.10 -52.49 -0.37 0.94 16 35 H 0.43 5.82 8.18 -40.82 -0.33 5.48 16 36 H 0.28 8.14 8.73 -40.82 -0.36 7.79 16 LS Contribution 313.81 15.07 4.73 4.73 Total: -1.00 -34.67 313.81 -4.77 -39.43 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -3.05 Total: 3.24 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: -2.30 Total: 11.44 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.31 Total: -47.63 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.04 Total: -29.85 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.07 Total: -4.01 kcal Atomic # 14 Polarization: 27.14 SS G_CDS: -4.49 Total: 22.65 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.67 -4.77 -39.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003464580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.129 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds