Wall clock time and date at job start Fri Apr 10 2020 18:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.75317 * 124.41392 * 2 1 4 4 C 1.75847 * 92.34025 * 179.97438 * 3 2 1 5 5 N 1.35098 * 130.60952 * 179.45580 * 4 3 2 6 6 C 1.29978 * 121.72485 * 179.97438 * 5 4 3 7 7 N 1.35776 * 121.82972 * 0.02562 * 6 5 4 8 8 C 1.46501 * 119.83527 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.46947 * 270.02134 * 8 7 6 10 10 H 1.07999 * 120.00104 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99972 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99862 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99860 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47078 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47386 * 119.99839 * 13 11 9 16 16 H 1.48504 * 109.46883 * 239.99568 * 13 11 9 17 17 C 1.34740 * 120.32201 * 0.02562 * 7 6 5 18 18 O 1.21903 * 120.62177 * 179.97438 * 17 7 6 19 19 C 1.38987 * 109.89153 * 359.68636 * 4 3 2 20 20 C 1.33295 * 124.42057 * 179.46308 * 2 1 3 21 21 C 1.48232 * 122.80529 * 0.02562 * 20 2 1 22 22 C 1.39419 * 120.12885 * 114.75116 * 21 20 2 23 23 C 1.38000 * 119.86976 * 179.72768 * 22 21 20 24 24 C 1.38338 * 120.12718 * 0.54612 * 23 22 21 25 25 C 1.38338 * 120.26199 * 359.72960 * 24 23 22 26 26 C 1.37994 * 120.12699 * 359.97438 * 25 24 23 27 27 H 1.09006 * 109.46543 * 270.53756 * 1 2 3 28 28 H 1.08993 * 109.47635 * 30.53680 * 1 2 3 29 29 H 1.09001 * 109.47123 * 150.54009 * 1 2 3 30 30 H 1.07994 * 119.07947 * 179.97438 * 6 5 4 31 31 H 1.08989 * 109.47471 * 30.02041 * 8 7 6 32 32 H 1.09000 * 109.46755 * 150.02472 * 8 7 6 33 33 H 0.97006 * 119.99641 * 180.02562 * 12 11 9 34 34 H 1.08004 * 120.06720 * 359.97438 * 22 21 20 35 35 H 1.07994 * 119.93964 * 180.27296 * 23 22 21 36 36 H 1.08002 * 119.87004 * 179.74457 * 24 23 22 37 37 H 1.07992 * 119.93815 * 179.97438 * 25 24 23 38 38 H 1.08001 * 120.06757 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4978 1.4463 0.0000 4 6 3.9879 0.5126 0.0008 5 7 5.2776 0.9146 -0.0086 6 6 6.2592 0.0626 -0.0056 7 7 6.0438 -1.2779 0.0066 8 6 7.1829 -2.1991 0.0089 9 6 7.5671 -2.5264 -1.4111 10 1 7.0175 -2.0920 -2.2331 11 6 8.6197 -3.3812 -1.6609 12 7 9.2886 -3.9106 -0.6600 13 14 9.0964 -3.7863 -3.4211 14 1 8.1945 -3.0671 -4.3562 15 1 10.4995 -3.3648 -3.6635 16 1 8.9738 -5.2495 -3.6428 17 6 4.7875 -1.7649 0.0155 18 8 4.5879 -2.9675 0.0259 19 6 3.6946 -0.8460 0.0082 20 6 2.2604 -1.0995 0.0103 21 6 1.6866 -2.4662 0.0226 22 6 1.8816 -3.3168 -1.0647 23 6 1.3498 -4.5901 -1.0453 24 6 0.6148 -5.0190 0.0454 25 6 0.4132 -4.1774 1.1247 26 6 0.9453 -2.9042 1.1191 27 1 -0.3632 0.0096 1.0277 28 1 -0.3634 0.8850 -0.5221 29 1 -0.3633 -0.8948 -0.5054 30 1 7.2742 0.4313 -0.0139 31 1 8.0273 -1.7316 0.5151 32 1 6.9080 -3.1154 0.5313 33 1 10.0294 -4.5117 -0.8358 34 1 2.4512 -2.9814 -1.9189 35 1 1.5039 -5.2515 -1.8850 36 1 0.1970 -6.0149 0.0545 37 1 -0.1618 -4.5175 1.9732 38 1 0.7876 -2.2482 1.9624 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005263626.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:21 Heat of formation + Delta-G solvation = 24.651759 kcal Electronic energy + Delta-G solvation = -24611.821872 eV Core-core repulsion = 21123.861814 eV Total energy + Delta-G solvation = -3487.960058 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 326.083 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.59748 -40.22605 -38.59455 -37.89175 -35.96244 -34.50378 -32.29097 -31.79890 -31.56610 -29.91464 -27.95821 -26.43621 -24.73315 -24.38929 -23.34948 -23.33057 -20.76671 -19.52406 -18.95204 -18.79363 -17.95726 -17.53107 -17.08674 -16.92935 -16.31688 -15.96621 -15.81701 -15.51742 -14.95006 -14.79295 -14.48219 -14.38784 -14.32310 -14.03568 -13.83822 -13.73665 -13.44936 -13.27026 -13.14705 -12.75323 -12.69656 -12.57693 -12.36132 -12.05858 -11.77355 -11.72057 -11.30298 -10.96301 -10.74199 -10.69722 -9.82397 -9.75212 -9.45813 -8.89358 -8.36375 -6.51723 -0.73257 0.07797 0.21305 0.51872 0.66710 0.76705 1.08022 1.34258 1.36722 1.47348 1.69099 2.30596 2.54620 2.86409 2.96467 3.17761 3.46400 3.66806 3.94744 3.99755 4.05280 4.11099 4.18801 4.25799 4.49707 4.55606 4.67499 4.70138 4.75016 4.76104 4.94921 5.07833 5.11006 5.15271 5.24144 5.31257 5.55412 5.56166 5.59829 5.65032 5.70751 5.78848 6.10390 6.52105 6.64665 6.87798 7.19321 8.71959 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.011754 B = 0.004749 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.503241 B = 5894.966233 C = 7556.953158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.181 4.181 3 S 0.245 5.755 4 C 0.063 3.937 5 N -0.527 5.527 6 C 0.398 3.602 7 N -0.516 5.516 8 C 0.240 3.760 9 C -0.553 4.553 10 H 0.050 0.950 11 C 0.025 3.975 12 N -0.915 5.915 13 Si 0.967 3.033 14 H -0.273 1.273 15 H -0.262 1.262 16 H -0.281 1.281 17 C 0.532 3.468 18 O -0.553 6.553 19 C -0.255 4.255 20 C -0.032 4.032 21 C -0.031 4.031 22 C -0.103 4.103 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.121 4.121 26 C -0.111 4.111 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.243 0.757 31 H 0.066 0.934 32 H 0.020 0.980 33 H 0.273 0.727 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.805 8.538 2.875 19.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.298 4.298 3 S 0.509 5.491 4 C -0.171 4.171 5 N -0.252 5.252 6 C 0.110 3.890 7 N -0.232 5.232 8 C 0.120 3.880 9 C -0.591 4.591 10 H 0.068 0.932 11 C -0.177 4.177 12 N -0.553 5.553 13 Si 0.791 3.209 14 H -0.198 1.198 15 H -0.187 1.187 16 H -0.207 1.207 17 C 0.328 3.672 18 O -0.432 6.432 19 C -0.272 4.272 20 C -0.043 4.043 21 C -0.033 4.033 22 C -0.122 4.122 23 C -0.149 4.149 24 C -0.139 4.139 25 C -0.139 4.139 26 C -0.129 4.129 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.259 0.741 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.172 0.828 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.139 10.029 2.932 20.933 hybrid contribution 1.384 -2.929 -0.963 3.380 sum -16.755 7.100 1.969 18.304 Atomic orbital electron populations 1.20490 0.84144 1.04273 1.04503 1.24534 1.01878 0.94362 1.09008 1.83433 0.87898 1.04028 1.73709 1.24290 0.98345 0.94500 0.99935 1.68093 0.96738 1.34142 1.26203 1.25678 1.01076 0.78005 0.84270 1.47044 1.09783 1.09576 1.56814 1.19511 0.81667 0.88581 0.98201 1.21399 1.16037 1.30038 0.91606 0.93216 1.25678 0.95531 0.94570 1.01901 1.70005 1.21362 1.31178 1.32805 0.85378 0.78650 0.77955 0.78914 1.19810 1.18710 1.20651 1.17111 0.82907 0.88803 0.78380 1.90860 1.84486 1.16533 1.51345 1.20786 0.94810 0.93183 1.18432 1.17993 0.88622 0.94108 1.03581 1.18344 0.97954 0.91740 0.95292 1.21048 0.98352 0.94894 0.97878 1.21259 0.98474 0.95148 1.00052 1.21502 0.98367 1.00756 0.93246 1.21390 1.00097 0.93176 0.99193 1.21339 0.97451 0.97286 0.96847 0.88467 0.88814 0.90539 0.74078 0.91599 0.96136 0.91831 0.89346 0.85257 0.83335 0.82782 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 9.66 71.24 0.69 -0.58 16 2 C -0.18 -4.66 6.42 24.57 0.16 -4.50 16 3 S 0.24 6.07 23.19 -56.49 -1.31 4.76 16 4 C 0.06 2.19 7.68 84.37 0.65 2.84 16 5 N -0.53 -18.22 10.42 -193.92 -2.02 -20.24 16 6 C 0.40 14.04 11.48 180.18 2.07 16.10 16 7 N -0.52 -22.98 2.57 -657.36 -1.69 -24.67 16 8 C 0.24 12.17 5.12 85.63 0.44 12.61 16 9 C -0.55 -30.38 9.38 25.60 0.24 -30.14 16 10 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 11 C 0.02 1.34 5.46 84.65 0.46 1.80 16 12 N -0.92 -51.84 13.29 21.45 0.28 -51.56 16 13 Si 0.97 43.28 29.54 68.60 2.03 45.30 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 15 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 17 C 0.53 25.46 7.50 85.39 0.64 26.10 16 18 O -0.55 -30.41 14.75 -5.00 -0.07 -30.48 16 19 C -0.26 -10.27 6.07 -20.05 -0.12 -10.39 16 20 C -0.03 -1.09 5.36 -19.83 -0.11 -1.20 16 21 C -0.03 -1.05 3.88 -20.05 -0.08 -1.13 16 22 C -0.10 -3.74 8.66 22.50 0.19 -3.54 16 23 C -0.13 -4.02 10.03 22.24 0.22 -3.80 16 24 C -0.12 -3.03 10.04 22.32 0.22 -2.81 16 25 C -0.12 -2.88 10.03 22.24 0.22 -2.65 16 26 C -0.11 -3.08 9.35 22.50 0.21 -2.87 16 27 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.39 7.50 -2.39 -0.02 1.37 16 30 H 0.24 6.40 8.02 -2.91 -0.02 6.38 16 31 H 0.07 3.12 8.01 -2.39 -0.02 3.10 16 32 H 0.02 1.20 7.43 -2.39 -0.02 1.18 16 33 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 34 H 0.09 3.56 8.06 -2.91 -0.02 3.53 16 35 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 36 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 38 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -72.83 344.84 4.42 -68.41 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 1.09 Total: 12.63 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 6.11 Total: -4.15 kcal Atomic # 7 Polarization: -93.05 SS G_CDS: -3.43 Total: -96.47 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.07 Total: -30.48 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 6.07 SS G_CDS: -1.31 Total: 4.76 kcal Total: -72.83 4.42 -68.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005263626.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.063 kcal (2) G-P(sol) polarization free energy of solvation -72.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds