Wall clock time and date at job start Fri Apr 10 2020 18:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38385 * 119.85294 * 2 1 4 4 C 1.37923 * 120.14863 * 180.02562 * 3 2 1 5 5 C 1.39633 * 119.85105 * 359.97438 * 4 3 2 6 6 C 1.47779 * 120.14945 * 180.02562 * 5 4 3 7 7 O 1.21540 * 120.00204 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00085 * 359.97438 * 6 5 4 9 9 C 1.38204 * 120.00359 * 174.77489 * 8 6 5 10 10 C 1.39997 * 119.80447 * 215.80634 * 9 8 6 11 11 C 1.35925 * 120.20339 * 179.71462 * 10 9 8 12 12 C 1.41657 * 119.78938 * 0.57813 * 11 10 9 13 13 C 1.39664 * 120.19324 * 179.67228 * 12 11 10 14 14 H 1.07995 * 119.99851 * 213.32921 * 13 12 11 15 15 C 1.46580 * 119.99724 * 33.33461 * 13 12 11 16 16 N 1.29492 * 120.00346 * 356.58443 * 15 13 12 17 17 Si 1.86802 * 119.99885 * 176.58165 * 15 13 12 18 18 H 1.48505 * 109.47034 * 90.00222 * 17 15 13 19 19 H 1.48497 * 109.47194 * 209.99922 * 17 15 13 20 20 H 1.48500 * 109.47288 * 330.00244 * 17 15 13 21 21 C 1.41652 * 119.61244 * 359.69862 * 12 11 10 22 22 C 1.35923 * 119.79508 * 359.97438 * 21 12 11 23 23 C 1.39588 * 119.70292 * 0.27530 * 5 4 3 24 24 C 1.37976 * 119.84854 * 359.48959 * 23 5 4 25 25 N 1.48016 * 119.92336 * 180.23026 * 24 23 5 26 26 O 1.31701 * 120.00364 * 6.79602 * 25 24 23 27 27 O 1.31703 * 120.00095 * 186.79298 * 25 24 23 28 28 H 1.09001 * 109.47213 * 97.35950 * 1 2 3 29 29 H 1.09000 * 109.47326 * 217.36271 * 1 2 3 30 30 H 1.08997 * 109.46948 * 337.36047 * 1 2 3 31 31 H 1.08002 * 119.92595 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.07397 * 179.97438 * 4 3 2 33 33 H 0.97005 * 119.99933 * 354.78208 * 8 6 5 34 34 H 1.08004 * 119.90089 * 359.97438 * 10 9 8 35 35 H 1.07995 * 120.10648 * 180.28013 * 11 10 9 36 36 H 0.96998 * 120.00656 * 179.97438 * 16 15 13 37 37 H 1.08001 * 120.10587 * 179.97438 * 21 12 11 38 38 H 1.08003 * 119.90191 * 180.02562 * 22 21 12 39 39 H 1.08002 * 120.07826 * 179.70247 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5751 1.2073 -0.0005 5 6 4.2763 -0.0001 -0.0005 6 6 5.7541 -0.0002 -0.0005 7 8 6.3618 -1.0528 -0.0010 8 7 6.4280 1.1669 -0.0011 9 6 7.8058 1.1695 0.1079 10 6 8.4452 2.1876 0.8253 11 6 9.7993 2.1948 0.9425 12 6 10.5646 1.1747 0.3257 13 6 11.9569 1.1777 0.4350 14 1 12.5633 0.8100 -0.3795 15 6 12.5952 1.6799 1.6553 16 7 11.8718 2.1817 2.6050 17 14 14.4521 1.5959 1.8406 18 1 15.0596 2.8417 1.3076 19 1 14.8001 1.4507 3.2769 20 1 14.9727 0.4285 1.0847 21 6 9.9094 0.1518 -0.4030 22 6 8.5540 0.1568 -0.5041 23 6 3.5752 -1.2072 -0.0058 24 6 2.1955 -1.1999 -0.0003 25 7 1.4504 -2.4789 -0.0008 26 8 2.0980 -3.6184 0.1286 27 8 0.1398 -2.4774 -0.1305 28 1 -0.3634 -0.1316 -1.0192 29 1 -0.3634 -0.8168 0.6236 30 1 -0.3633 0.9485 0.3956 31 1 1.6522 2.1335 0.0004 32 1 4.1114 2.1447 -0.0010 33 1 5.9461 2.0053 -0.0778 34 1 7.8604 2.9674 1.2905 35 1 10.2906 2.9784 1.5000 36 1 12.2940 2.5136 3.4126 37 1 10.4850 -0.6296 -0.8767 38 1 8.0526 -0.6225 -1.0590 39 1 4.1115 -2.1446 -0.0107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009514775.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:53 Heat of formation + Delta-G solvation = 45.276139 kcal Electronic energy + Delta-G solvation = -25588.434108 eV Core-core repulsion = 21658.615520 eV Total energy + Delta-G solvation = -3929.818588 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.110 amu Computer time = 3.29 seconds Orbital eigenvalues (eV) -41.04085 -39.67643 -38.33879 -37.15950 -34.89110 -34.65811 -33.54483 -32.96215 -32.15467 -29.68359 -29.30607 -28.33611 -26.65084 -24.82009 -23.16067 -22.96117 -21.62413 -20.93376 -20.11436 -18.67516 -18.27613 -17.57708 -17.27526 -16.59400 -16.35409 -15.99293 -15.54964 -15.24095 -14.91707 -14.74110 -14.14140 -14.10135 -13.96387 -13.24875 -13.11110 -12.80332 -12.78491 -12.55373 -12.19967 -12.15561 -11.77402 -11.51710 -11.42786 -11.28450 -11.14645 -11.02037 -10.82952 -10.70661 -10.24577 -10.06318 -9.66090 -9.56772 -9.50841 -9.34273 -9.04529 -7.63729 -7.05268 -6.88893 -4.37776 -0.94814 0.19582 0.72646 0.84398 2.31354 2.66698 2.95988 2.97140 3.04859 3.10432 3.27640 3.52105 3.78097 3.85719 3.94321 4.26263 4.34026 4.38062 4.45632 4.69708 4.93774 5.10351 5.12874 5.29700 5.39561 5.48784 5.50926 5.56249 5.70642 5.98751 6.11341 6.37761 6.54026 6.65684 6.78124 6.83462 7.07783 7.21352 7.56548 7.61166 7.79921 7.97067 8.11221 8.15400 8.45655 8.56818 8.70788 8.95925 9.94064 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.030284 B = 0.002234 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.349851 B =12531.745260 C =13072.715217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.002 3.998 3 C -0.128 4.128 4 C -0.031 4.031 5 C -0.123 4.123 6 C 0.535 3.465 7 O -0.518 6.518 8 N -0.629 5.629 9 C -0.035 4.035 10 C -0.105 4.105 11 C -0.164 4.164 12 C 0.107 3.893 13 C -0.462 4.462 14 H 0.081 0.919 15 C 0.070 3.930 16 N -0.772 5.772 17 Si 0.922 3.078 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.258 1.258 21 C -0.224 4.224 22 C -0.068 4.068 23 C 0.006 3.994 24 C -0.015 4.015 25 N -0.014 5.014 26 O -0.170 6.170 27 O -0.169 6.169 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.393 0.607 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.286 0.714 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.249 4.057 -2.708 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.000 4.000 3 C -0.147 4.147 4 C -0.049 4.049 5 C -0.128 4.128 6 C 0.321 3.679 7 O -0.395 6.395 8 N -0.270 5.270 9 C -0.127 4.127 10 C -0.125 4.125 11 C -0.184 4.184 12 C 0.104 3.896 13 C -0.490 4.490 14 H 0.099 0.901 15 C -0.154 4.154 16 N -0.394 5.394 17 Si 0.746 3.254 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.182 1.182 21 C -0.244 4.244 22 C -0.088 4.088 23 C -0.014 4.014 24 C -0.102 4.102 25 N 0.463 4.537 26 O -0.363 6.363 27 O -0.361 6.361 28 H 0.111 0.889 29 H 0.121 0.879 30 H 0.095 0.905 31 H 0.173 0.827 32 H 0.167 0.833 33 H 0.227 0.773 34 H 0.107 0.893 35 H 0.146 0.854 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -16.475 3.956 -2.442 17.119 hybrid contribution 0.320 0.025 0.292 0.434 sum -16.156 3.981 -2.150 16.777 Atomic orbital electron populations 1.21452 0.88074 1.04840 1.04923 1.20140 0.98429 0.90329 0.91068 1.21105 0.93776 0.97307 1.02480 1.21895 0.94502 0.98253 0.90296 1.20143 0.95041 0.92484 1.05097 1.17861 0.85499 0.85034 0.79485 1.90810 1.68587 1.30947 1.49142 1.42499 1.06964 1.07285 1.70301 1.17111 0.79657 1.04117 1.11859 1.20226 0.95508 0.97718 0.99029 1.21152 0.91782 1.00354 1.05114 1.17702 0.93405 0.88911 0.89570 1.20591 0.91884 1.36412 1.00156 0.90062 1.27474 1.01129 0.91643 0.95113 1.69077 1.38930 1.25858 1.05544 0.86087 0.80836 0.80101 0.78407 1.19098 1.20021 1.18152 1.20764 0.93186 1.00410 1.10032 1.20355 0.93796 0.96916 0.97727 1.21189 0.90432 1.01101 0.88702 1.20064 0.91454 0.81620 1.17047 1.50365 1.02868 1.04063 0.96426 1.96329 1.69085 1.15885 1.54978 1.96179 0.89838 1.95549 1.54571 0.88866 0.87904 0.90509 0.82727 0.83302 0.77281 0.89341 0.85418 0.90132 0.88691 0.87694 0.81364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.58 36.01 0.31 -0.59 16 2 C 0.00 0.02 5.89 -104.53 -0.62 -0.60 16 3 C -0.13 -0.82 9.65 -39.64 -0.38 -1.21 16 4 C -0.03 -0.24 9.54 -39.18 -0.37 -0.62 16 5 C -0.12 -1.49 5.87 -104.97 -0.62 -2.10 16 6 C 0.53 8.83 7.60 -12.36 -0.09 8.74 16 7 O -0.52 -10.80 13.75 5.33 0.07 -10.73 16 8 N -0.63 -10.17 5.20 -10.60 -0.06 -10.23 16 9 C -0.04 -0.74 6.30 -83.67 -0.53 -1.27 16 10 C -0.10 -2.28 9.89 -39.75 -0.39 -2.67 16 11 C -0.16 -4.06 8.68 -39.11 -0.34 -4.40 16 12 C 0.11 2.77 5.59 -106.76 -0.60 2.18 16 13 C -0.46 -11.84 9.26 -35.69 -0.33 -12.17 16 14 H 0.08 2.00 7.94 -52.49 -0.42 1.58 16 15 C 0.07 1.66 5.58 -15.18 -0.08 1.58 16 16 N -0.77 -18.73 10.68 55.99 0.60 -18.13 16 17 Si 0.92 17.72 29.65 -169.99 -5.04 12.68 16 18 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 19 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 20 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 21 C -0.22 -5.57 9.76 -39.11 -0.38 -5.95 16 22 C -0.07 -1.59 8.59 -39.75 -0.34 -1.94 16 23 C 0.01 0.07 9.13 -39.17 -0.36 -0.28 16 24 C -0.02 -0.17 6.85 -80.01 -0.55 -0.72 16 25 N -0.01 -0.20 4.98 33.93 0.17 -0.03 16 26 O -0.17 -2.65 19.16 -31.57 -0.60 -3.25 16 27 O -0.17 -2.19 15.93 -31.57 -0.50 -2.69 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.10 0.82 5.78 -51.93 -0.30 0.52 16 30 H 0.08 0.31 8.03 -51.93 -0.42 -0.11 16 31 H 0.16 0.46 8.05 -52.49 -0.42 0.04 16 32 H 0.15 0.77 6.42 -52.49 -0.34 0.44 16 33 H 0.39 4.59 6.86 -40.82 -0.28 4.31 16 34 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 35 H 0.13 3.23 6.11 -52.49 -0.32 2.91 16 36 H 0.29 6.24 8.27 -40.82 -0.34 5.90 16 37 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 38 H 0.11 2.43 6.24 -52.48 -0.33 2.10 16 39 H 0.17 2.34 7.18 -52.49 -0.38 1.96 16 LS Contribution 342.57 15.07 5.16 5.16 Total: -1.00 -30.82 342.57 -9.47 -40.29 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -3.60 Total: 8.95 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -5.67 Total: -22.01 kcal Atomic # 7 Polarization: -29.10 SS G_CDS: 0.71 Total: -28.39 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -1.03 Total: -16.67 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.04 Total: 12.68 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.82 -9.47 -40.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009514775.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.567 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.29 seconds