Wall clock time and date at job start Fri Apr 10 2020 18:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99953 * 2 1 4 4 H 1.48496 * 109.47332 * 270.00253 * 3 2 1 5 5 H 1.48500 * 109.46881 * 30.00295 * 3 2 1 6 6 H 1.48497 * 109.47077 * 150.00183 * 3 2 1 7 7 C 1.37878 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99244 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00423 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47356 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.47230 * 180.02562 * 10 9 7 12 12 C 1.34798 * 117.00023 * 179.97438 * 11 10 9 13 13 O 1.21559 * 120.00106 * 0.02562 * 12 11 10 14 14 C 1.47133 * 120.00247 * 179.97438 * 12 11 10 15 15 C 1.37390 * 120.56420 * 180.24133 * 14 12 11 16 16 N 1.35920 * 121.62410 * 180.26097 * 15 14 12 17 17 C 1.46661 * 115.61704 * 182.60219 * 16 15 14 18 18 C 1.53126 * 110.51845 * 216.68350 * 17 16 15 19 19 S 1.82061 * 107.04174 * 302.24440 * 18 17 16 20 20 O 1.42105 * 110.77815 * 161.70830 * 19 18 17 21 21 O 1.42099 * 110.78266 * 299.24649 * 19 18 17 22 22 N 1.65357 * 102.76740 * 50.50301 * 19 18 17 23 23 C 1.31298 * 122.52946 * 336.35319 * 22 19 18 24 24 C 1.42853 * 114.93223 * 180.09980 * 23 22 19 25 25 C 1.34932 * 120.56513 * 182.97710 * 24 23 22 26 26 H 0.97000 * 120.00038 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46739 * 59.99592 * 9 7 2 28 28 H 1.09001 * 109.46927 * 300.00443 * 9 7 2 29 29 H 1.08998 * 109.47005 * 60.00035 * 10 9 7 30 30 H 1.08998 * 109.46984 * 300.00190 * 10 9 7 31 31 H 1.08004 * 119.18575 * 359.96415 * 15 14 12 32 32 H 1.09007 * 109.27190 * 336.95190 * 17 16 15 33 33 H 1.09004 * 109.26989 * 96.45636 * 17 16 15 34 34 H 1.09001 * 109.93799 * 61.62988 * 18 17 16 35 35 H 1.09001 * 109.94098 * 182.85908 * 18 17 16 36 36 H 1.08004 * 119.71005 * 2.95402 * 24 23 22 37 37 H 1.08002 * 120.77150 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 8 5.4736 -2.6365 -0.0009 12 6 6.0855 -3.8375 -0.0003 13 8 5.4235 -4.8570 -0.0003 14 6 7.5549 -3.9146 -0.0008 15 6 8.1906 -5.1325 -0.0051 16 7 9.5464 -5.2288 -0.0004 17 6 10.0855 -6.5912 -0.0659 18 6 11.3463 -6.7114 0.7948 19 16 12.5335 -5.4769 0.1776 20 8 13.5417 -5.2192 1.1452 21 8 12.8629 -5.7295 -1.1814 22 7 11.6320 -4.0912 0.1374 23 6 10.3220 -4.1034 0.0501 24 6 9.7081 -2.8138 0.0254 25 6 8.3643 -2.6939 -0.0020 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6803 0.8888 28 1 3.8745 -0.6799 -0.8911 29 1 3.6579 -3.1505 -0.8907 30 1 3.6586 -3.1501 0.8892 31 1 7.5984 -6.0357 -0.0076 32 1 9.3344 -7.2932 0.2964 33 1 10.3326 -6.8309 -1.1002 34 1 11.1052 -6.5064 1.8378 35 1 11.7674 -7.7123 0.6995 36 1 10.3248 -1.9272 0.0291 37 1 7.8967 -1.7206 -0.0203 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023076503.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:19 Heat of formation + Delta-G solvation = -90.398142 kcal Electronic energy + Delta-G solvation = -24446.239146 eV Core-core repulsion = 20510.148137 eV Total energy + Delta-G solvation = -3936.091010 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.85448 -40.08252 -37.34063 -36.57962 -36.16931 -35.89694 -35.26459 -33.41420 -32.01177 -30.96710 -30.11471 -25.98282 -25.80795 -24.50496 -23.72805 -21.40346 -20.77645 -19.69721 -18.88787 -18.40287 -17.65684 -17.23654 -16.87406 -16.71447 -16.29108 -16.23652 -15.98090 -15.76329 -15.22006 -14.34410 -14.29148 -14.19780 -13.86617 -13.66673 -13.28738 -13.01045 -12.86606 -12.61448 -12.36496 -12.28056 -12.26725 -11.84248 -11.59449 -11.41394 -11.37842 -10.89235 -10.82707 -10.80765 -10.23891 -10.18954 -10.04100 -9.85219 -9.44767 -8.70510 -8.68858 -6.20568 -4.22782 -0.17900 0.09167 0.25736 1.26165 2.13233 2.44514 2.72537 2.94185 3.17985 3.22190 3.30481 3.32630 3.36164 3.65918 3.75715 3.97888 4.08585 4.23751 4.31270 4.36203 4.38496 4.56671 4.75827 4.80823 5.11756 5.12904 5.34074 5.54812 5.70193 5.76786 5.82101 5.84217 6.30430 6.52493 6.53546 7.02289 7.09792 7.52353 7.79493 8.30466 8.80425 9.38421 10.91789 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.032363 B = 0.002294 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.987103 B =12202.535912 C =12864.690676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.530 4.530 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.084 3.916 11 O -0.351 6.351 12 C 0.520 3.480 13 O -0.514 6.514 14 C -0.194 4.194 15 C 0.187 3.813 16 N -0.507 5.507 17 C 0.096 3.904 18 C -0.681 4.681 19 S 2.551 3.449 20 O -0.940 6.940 21 O -0.961 6.961 22 N -0.963 5.963 23 C 0.519 3.481 24 C -0.162 4.162 25 C 0.017 3.983 26 H 0.267 0.733 27 H 0.029 0.971 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.190 0.810 32 H 0.129 0.871 33 H 0.115 0.885 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.172 0.828 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.794 -13.066 0.939 24.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.568 4.568 8 H 0.094 0.906 9 C -0.047 4.047 10 C 0.012 3.988 11 O -0.267 6.267 12 C 0.364 3.636 13 O -0.405 6.405 14 C -0.202 4.202 15 C 0.059 3.941 16 N -0.202 5.202 17 C -0.026 4.026 18 C -0.805 4.805 19 S 2.638 3.362 20 O -0.930 6.930 21 O -0.949 6.949 22 N -0.817 5.817 23 C 0.264 3.736 24 C -0.186 4.186 25 C -0.007 4.007 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.207 0.793 32 H 0.147 0.853 33 H 0.133 0.867 34 H 0.161 0.839 35 H 0.173 0.827 36 H 0.189 0.811 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 22.180 -13.043 0.759 25.742 hybrid contribution -0.682 -0.214 0.282 0.769 sum 21.498 -13.257 1.041 25.279 Atomic orbital electron populations 1.69889 1.06318 1.27321 1.49783 1.24943 0.94772 0.99231 0.94043 0.86748 0.80410 0.83244 0.78772 1.20022 1.21174 1.18708 1.20806 0.88171 0.95060 1.52767 0.90638 1.19639 0.97084 0.89933 0.98030 1.23497 0.71258 1.01928 1.02110 1.86532 1.26890 1.30634 1.82669 1.20147 0.87316 0.82766 0.73384 1.90872 1.66677 1.36235 1.46676 1.19777 0.91847 0.92883 1.15700 1.22389 0.81725 1.00412 0.89562 1.45177 1.06725 1.07811 1.60525 1.22052 0.97225 0.80661 1.02648 1.31095 1.14512 1.23468 1.11444 1.07171 0.78165 0.75245 0.75574 1.93611 1.54573 1.82338 1.62431 1.93623 1.83263 1.84776 1.33281 1.75236 1.10080 1.45775 1.50612 1.19258 0.87107 0.86333 0.80938 1.21473 0.94646 0.94629 1.07853 1.22756 0.92624 0.98826 0.86507 0.92347 0.95263 0.95671 0.91357 0.91361 0.79298 0.85310 0.86714 0.83944 0.82735 0.81084 0.81477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 13.96 55.43 0.77 -25.48 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 20.26 27.47 -169.99 -4.67 15.59 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 7 C -0.53 -14.13 9.66 -34.44 -0.33 -14.46 16 8 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.21 4.42 -27.89 -0.12 -0.33 16 10 C 0.08 1.56 5.42 37.16 0.20 1.76 16 11 O -0.35 -5.37 9.63 -40.76 -0.39 -5.76 16 12 C 0.52 6.71 7.90 34.34 0.27 6.98 16 13 O -0.51 -7.73 16.10 -19.31 -0.31 -8.05 16 14 C -0.19 -1.70 6.00 -103.28 -0.62 -2.32 16 15 C 0.19 1.15 9.67 -16.05 -0.16 0.99 16 16 N -0.51 -3.09 2.99 -115.33 -0.34 -3.43 16 17 C 0.10 0.33 6.20 -3.89 -0.02 0.31 16 18 C -0.68 -3.03 6.81 37.22 0.25 -2.78 16 19 S 2.55 26.15 6.04 -107.50 -0.65 25.50 16 20 O -0.94 -13.20 18.11 -57.50 -1.04 -14.24 16 21 O -0.96 -12.69 18.11 -57.50 -1.04 -13.73 16 22 N -0.96 -10.44 10.54 31.30 0.33 -10.11 16 23 C 0.52 4.47 7.29 -156.64 -1.14 3.33 16 24 C -0.16 -1.23 9.76 -38.97 -0.38 -1.61 16 25 C 0.02 0.13 9.86 -37.44 -0.37 -0.24 16 26 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 28 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.19 0.72 7.21 -52.48 -0.38 0.34 16 32 H 0.13 0.03 7.61 -51.92 -0.40 -0.37 16 33 H 0.11 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.14 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.15 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.17 1.11 8.06 -52.48 -0.42 0.68 16 37 H 0.17 1.10 7.81 -52.49 -0.41 0.70 16 LS Contribution 334.62 15.07 5.04 5.04 Total: -1.00 -37.57 334.62 -8.89 -46.47 By element: Atomic # 1 Polarization: -1.25 SS G_CDS: -4.07 Total: -5.32 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.52 Total: -6.47 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.76 Total: -39.03 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -2.79 Total: -41.79 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.67 Total: 15.59 kcal Atomic # 16 Polarization: 26.15 SS G_CDS: -0.65 Total: 25.50 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -37.57 -8.89 -46.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023076503.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.931 kcal (2) G-P(sol) polarization free energy of solvation -37.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds