Wall clock time and date at job start Fri Apr 10 2020 18:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99852 * 2 1 4 4 H 1.48500 * 109.47390 * 269.99663 * 3 2 1 5 5 H 1.48500 * 109.47403 * 29.99790 * 3 2 1 6 6 H 1.48497 * 109.47398 * 149.99709 * 3 2 1 7 7 C 1.37881 * 120.00457 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99880 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99761 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47121 * 185.01003 * 9 7 2 11 11 C 1.46962 * 110.99331 * 295.17283 * 10 9 7 12 12 C 1.53056 * 109.35928 * 183.18947 * 11 10 9 13 13 N 1.46949 * 109.36746 * 301.59525 * 12 11 10 14 14 C 1.38445 * 111.00176 * 183.19240 * 13 12 11 15 15 N 1.32479 * 119.20602 * 359.72793 * 14 13 12 16 16 C 1.32286 * 120.75121 * 180.27899 * 15 14 13 17 17 C 1.38682 * 119.18288 * 0.02562 * 16 15 14 18 18 Br 1.89100 * 120.72765 * 179.97438 * 17 16 15 19 19 C 1.38668 * 118.54076 * 0.02562 * 17 16 15 20 20 N 1.32281 * 119.19025 * 359.97438 * 19 17 16 21 21 C 1.46958 * 110.87900 * 59.32049 * 13 12 11 22 22 C 1.46959 * 111.00546 * 58.96819 * 10 9 7 23 23 H 0.96995 * 120.00013 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47405 * 65.00024 * 9 7 2 25 25 H 1.09005 * 109.46221 * 305.00154 * 9 7 2 26 26 H 1.09001 * 109.49058 * 63.22417 * 11 10 9 27 27 H 1.09002 * 109.49057 * 303.15391 * 11 10 9 28 28 H 1.09005 * 109.48782 * 181.62938 * 12 11 10 29 29 H 1.09000 * 109.50783 * 61.57829 * 12 11 10 30 30 H 1.07995 * 120.40590 * 179.97438 * 16 15 14 31 31 H 1.07999 * 120.40606 * 180.02562 * 19 17 16 32 32 H 1.09001 * 109.48578 * 60.64681 * 21 13 12 33 33 H 1.09001 * 109.48843 * 180.70953 * 21 13 12 34 34 H 1.08999 * 109.48750 * 296.78653 * 22 10 9 35 35 H 1.09001 * 109.48154 * 56.82593 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2012 -3.6130 0.1221 11 6 3.0790 -3.6870 -1.0542 12 6 3.9977 -4.9045 -0.9259 13 7 4.7857 -4.7922 0.3094 14 6 5.6811 -5.8419 0.4238 15 7 5.7183 -6.7662 -0.5245 16 6 6.5579 -7.7852 -0.4434 17 6 7.4045 -7.8783 0.6511 18 35 8.6214 -9.3168 0.8117 19 6 7.3382 -6.8940 1.6256 20 7 6.4752 -5.9017 1.4827 21 6 3.9079 -4.7180 1.4857 22 6 2.9893 -3.5007 1.3574 23 1 -0.4850 0.8400 -0.0004 24 1 0.6938 -2.5969 -0.9310 25 1 0.5587 -2.5187 0.8421 26 1 3.6821 -2.7812 -1.1156 27 1 2.4727 -3.7824 -1.9550 28 1 4.6695 -4.9451 -1.7833 29 1 3.3959 -5.8126 -0.8921 30 1 6.5833 -8.5357 -1.2195 31 1 7.9838 -6.9366 2.4903 32 1 3.3048 -5.6239 1.5470 33 1 4.5143 -4.6228 2.3865 34 1 3.5913 -2.5927 1.3235 35 1 2.3174 -3.4598 2.2148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045944844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:38 Heat of formation + Delta-G solvation = 81.527033 kcal Electronic energy + Delta-G solvation = -19580.207344 eV Core-core repulsion = 16467.392928 eV Total energy + Delta-G solvation = -3112.814416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 326.044 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.46438 -38.75391 -35.52793 -34.09980 -32.94203 -32.18949 -30.55988 -29.72981 -27.62171 -25.28915 -25.15608 -23.07926 -22.83645 -21.64860 -19.41312 -17.99893 -17.87293 -16.43790 -15.76032 -15.55175 -15.05896 -14.62745 -14.39539 -14.28529 -14.09012 -13.86095 -13.29242 -13.16881 -12.07015 -12.01912 -11.73045 -11.36385 -11.19747 -11.13847 -10.94085 -10.92489 -10.83344 -10.66453 -10.53391 -10.21364 -9.96762 -9.81554 -9.62316 -9.36822 -8.46115 -8.39294 -7.27904 -6.05924 -4.15052 0.47986 0.80304 1.18193 3.04889 3.26664 3.33772 3.37420 3.44343 3.85162 4.18003 4.39100 4.47992 4.56813 4.93321 5.19957 5.24671 5.26152 5.41712 5.62132 5.68236 5.73070 5.86541 6.02899 6.14980 6.42800 6.51987 6.61988 6.73488 6.74790 7.09978 7.20185 7.48300 7.85658 7.88473 7.95466 8.17253 8.24264 8.94908 9.52310 10.99411 Molecular weight = 326.04amu Principal moments of inertia in cm(-1) A = 0.041702 B = 0.002501 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.262783 B =11194.264356 C =11399.984121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.188 3.812 10 N -0.544 5.544 11 C 0.059 3.941 12 C 0.072 3.928 13 N -0.454 5.454 14 C 0.515 3.485 15 N -0.543 5.543 16 C 0.212 3.788 17 C -0.252 4.252 18 Br -0.028 7.028 19 C 0.212 3.788 20 N -0.524 5.524 21 C 0.071 3.929 22 C 0.063 3.937 23 H 0.263 0.737 24 H 0.029 0.971 25 H 0.036 0.964 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.175 0.825 31 H 0.176 0.824 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.646 -20.071 1.852 26.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.590 4.590 8 H 0.077 0.923 9 C 0.062 3.938 10 N -0.269 5.269 11 C -0.070 4.070 12 C -0.054 4.054 13 N -0.172 5.172 14 C 0.160 3.840 15 N -0.263 5.263 16 C 0.041 3.959 17 C -0.339 4.339 18 Br 0.055 6.945 19 C 0.041 3.959 20 N -0.242 5.242 21 C -0.054 4.054 22 C -0.066 4.066 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.192 0.808 31 H 0.193 0.807 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.133 -19.580 1.828 25.436 hybrid contribution 1.022 0.845 -0.074 1.328 sum 17.155 -18.734 1.754 25.462 Atomic orbital electron populations 1.69938 1.06033 1.26907 1.50044 1.24955 0.94751 0.99183 0.94812 0.86640 0.79955 0.83543 0.78181 1.20631 1.21144 1.19874 1.21751 0.93419 0.92016 1.51856 0.92308 1.19744 0.90723 0.85319 0.97991 1.62757 1.16852 1.46658 1.00625 1.22057 0.94298 0.95591 0.95084 1.22303 0.94717 0.99518 0.88906 1.58536 1.18378 1.32954 1.07320 1.21435 0.91584 0.86088 0.84883 1.68615 1.23680 1.03139 1.30916 1.23131 0.85812 0.93287 0.93623 1.23430 1.05966 1.01182 1.03282 1.96722 1.57691 1.41883 1.98223 1.23148 0.91303 0.85767 0.95701 1.68224 1.07508 1.24467 1.24036 1.22454 0.92972 1.00043 0.89949 1.21990 0.94940 0.95081 0.94605 0.92769 0.95262 0.94557 0.93202 0.90323 0.89832 0.92273 0.80847 0.80690 0.93262 0.89116 0.92628 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.29 55.43 0.74 -25.11 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.55 -14.84 7.66 -34.44 -0.26 -15.11 16 8 H 0.06 1.59 5.82 -52.49 -0.31 1.28 16 9 C 0.19 4.70 5.14 -4.98 -0.03 4.67 16 10 N -0.54 -11.34 4.92 -235.91 -1.16 -12.50 16 11 C 0.06 1.11 5.32 -3.76 -0.02 1.09 16 12 C 0.07 1.17 4.77 -3.77 -0.02 1.15 16 13 N -0.45 -7.50 4.77 -175.23 -0.84 -8.34 16 14 C 0.51 7.77 7.17 -322.78 -2.32 5.46 16 15 N -0.54 -7.42 8.70 -13.90 -0.12 -7.54 16 16 C 0.21 2.23 11.08 -17.19 -0.19 2.04 16 17 C -0.25 -2.46 6.27 -39.26 -0.25 -2.70 16 18 Br -0.03 -0.22 33.76 -68.01 -2.30 -2.51 16 19 C 0.21 2.25 11.08 -17.20 -0.19 2.06 16 20 N -0.52 -7.32 9.71 -13.91 -0.14 -7.46 16 21 C 0.07 1.15 5.46 -3.77 -0.02 1.13 16 22 C 0.06 1.20 5.24 -3.77 -0.02 1.18 16 23 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.03 0.78 8.12 -51.93 -0.42 0.36 16 25 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.05 1.05 6.78 -51.93 -0.35 0.70 16 27 H 0.08 1.45 8.12 -51.93 -0.42 1.02 16 28 H 0.08 1.28 7.81 -51.93 -0.41 0.87 16 29 H 0.06 0.96 8.03 -51.93 -0.42 0.54 16 30 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.18 1.33 8.06 -52.49 -0.42 0.90 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.38 7.64 -51.93 -0.40 0.98 16 34 H 0.06 1.18 6.62 -51.93 -0.34 0.84 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 308.42 15.07 4.65 4.65 Total: -1.00 -29.45 308.42 -11.90 -41.35 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -4.31 Total: -1.52 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -3.41 Total: 2.69 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -1.52 Total: -60.94 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -2.30 Total: -2.51 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.45 -11.90 -41.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045944844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.878 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds