Wall clock time and date at job start Fri Apr 10 2020 18:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99864 * 2 1 4 4 H 1.48501 * 109.47109 * 240.00161 * 3 2 1 5 5 H 1.48501 * 109.46775 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47071 * 120.00021 * 3 2 1 7 7 C 1.37877 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99881 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46960 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99758 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00201 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00233 * 180.02562 * 11 10 9 14 14 O 1.45195 * 109.47406 * 180.02562 * 13 11 10 15 15 C 1.34733 * 117.00160 * 180.02562 * 14 13 11 16 16 O 1.21493 * 119.99482 * 359.97438 * 15 14 13 17 17 C 1.47559 * 120.00161 * 179.97438 * 15 14 13 18 18 C 1.39714 * 120.17201 * 0.02562 * 17 15 14 19 19 C 1.37835 * 119.87053 * 179.97438 * 18 17 15 20 20 C 1.38471 * 120.22982 * 359.97438 * 19 18 17 21 21 N 1.48021 * 119.82834 * 180.02562 * 20 19 18 22 22 O 1.21799 * 119.99708 * 359.97438 * 21 20 19 23 23 O 1.21802 * 119.99913 * 180.02562 * 21 20 19 24 24 C 1.38209 * 120.34832 * 359.75383 * 20 19 18 25 25 C 1.38318 * 120.11934 * 0.50388 * 24 20 19 26 26 F 1.35104 * 120.11114 * 179.76855 * 25 24 20 27 27 H 0.96995 * 119.99922 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47312 * 59.99435 * 9 7 2 29 29 H 1.09007 * 109.47184 * 299.99244 * 9 7 2 30 30 H 0.96991 * 120.00073 * 359.97438 * 10 9 7 31 31 H 1.08998 * 109.47008 * 60.00394 * 13 11 10 32 32 H 1.09007 * 109.46639 * 300.00722 * 13 11 10 33 33 H 1.07993 * 120.06664 * 359.97438 * 18 17 15 34 34 H 1.08007 * 119.88792 * 180.02562 * 19 18 17 35 35 H 1.08001 * 119.93968 * 180.27403 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5616 -5.1050 0.0011 13 6 2.7333 -6.0287 0.0016 14 8 2.0073 -7.2862 0.0015 15 6 2.7412 -8.4162 0.0025 16 8 3.9544 -8.3525 0.0030 17 6 2.0713 -9.7309 0.0031 18 6 0.6763 -9.8083 0.0020 19 6 0.0570 -11.0397 0.0019 20 6 0.8127 -12.2000 0.0024 21 7 0.1384 -13.5178 0.0018 22 8 -1.0780 -13.5793 0.0013 23 8 0.8000 -14.5404 0.0027 24 6 2.1932 -12.1343 -0.0021 25 6 2.8296 -10.9063 0.0033 26 9 4.1792 -10.8423 0.0035 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8904 30 1 3.1568 -3.4353 0.0002 31 1 3.3598 -5.9707 0.8917 32 1 3.3601 -5.9713 -0.8883 33 1 0.0843 -8.9050 0.0011 34 1 -1.0214 -11.0998 0.0006 35 1 2.7761 -13.0435 -0.0062 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052180967.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:58 Heat of formation + Delta-G solvation = -134.660569 kcal Electronic energy + Delta-G solvation = -25706.174744 eV Core-core repulsion = 21201.951196 eV Total energy + Delta-G solvation = -4504.223549 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.084 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.75706 -42.75688 -41.09146 -39.63170 -38.80838 -37.12085 -36.72078 -34.38827 -33.15860 -32.51064 -31.78029 -29.55248 -27.88400 -26.71133 -24.15004 -23.96218 -22.72045 -21.73137 -20.19370 -20.11277 -19.31499 -18.76573 -18.10855 -17.85816 -17.19138 -17.10955 -16.98997 -16.79599 -16.32567 -15.74432 -15.36166 -15.06988 -14.84045 -14.67824 -14.27563 -13.81735 -13.56396 -13.19555 -13.13641 -12.80533 -12.64100 -12.09865 -12.08361 -11.92988 -11.78715 -11.64532 -11.16911 -11.09314 -11.05172 -10.93116 -10.50101 -10.42245 -9.93395 -9.54678 -9.36516 -8.86853 -8.12010 -6.27183 -4.35232 -1.16329 0.00619 0.41247 0.66308 1.71415 1.83184 2.54674 2.99446 3.03892 3.18879 3.24132 3.25244 3.49778 3.57469 3.72169 3.89006 4.10494 4.26445 4.34711 4.62956 4.84712 4.92751 4.96656 5.00814 5.07866 5.09383 5.15767 5.43672 5.75185 5.85209 7.04778 7.06862 7.12275 7.20191 7.34926 7.50962 7.83018 8.35986 8.59087 8.82301 9.31438 10.82764 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.029375 B = 0.001985 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.948632 B =14103.881871 C =15036.382520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.252 3.748 10 N -0.704 5.704 11 C 0.500 3.500 12 O -0.534 6.534 13 C 0.050 3.950 14 O -0.319 6.319 15 C 0.504 3.496 16 O -0.480 6.480 17 C -0.108 4.108 18 C -0.025 4.025 19 C -0.077 4.077 20 C 0.013 3.987 21 N 0.022 4.978 22 O -0.138 6.138 23 O -0.147 6.147 24 C -0.108 4.108 25 C 0.171 3.829 26 F -0.095 7.095 27 H 0.268 0.732 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.394 0.606 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.181 0.819 34 H 0.172 0.828 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.582 -23.321 -0.003 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.132 3.868 10 N -0.354 5.354 11 C 0.283 3.717 12 O -0.412 6.412 13 C -0.028 4.028 14 O -0.233 6.233 15 C 0.346 3.654 16 O -0.367 6.367 17 C -0.111 4.111 18 C -0.044 4.044 19 C -0.096 4.096 20 C -0.070 4.070 21 N 0.545 4.455 22 O -0.358 6.358 23 O -0.364 6.364 24 C -0.128 4.128 25 C 0.150 3.850 26 F -0.073 7.073 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.227 0.773 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.198 0.802 34 H 0.190 0.810 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 4.299 -22.601 -0.004 23.006 hybrid contribution 1.199 0.742 0.000 1.410 sum 5.498 -21.858 -0.004 22.539 Atomic orbital electron populations 1.69954 1.06122 1.27635 1.48393 1.24952 0.94952 0.99525 0.94511 0.86437 0.79402 0.82111 0.78754 1.20007 1.21002 1.20010 1.21156 0.93310 0.90265 1.53905 0.91783 1.19199 0.88101 0.81440 0.98095 1.46380 1.11669 1.05268 1.72064 1.19794 0.89012 0.83951 0.78962 1.90712 1.16206 1.84516 1.49769 1.23018 0.94556 0.80028 1.05154 1.86557 1.39726 1.13842 1.83214 1.20569 0.85612 0.84815 0.74400 1.90955 1.14083 1.87763 1.43932 1.19655 0.94712 0.90481 1.06239 1.21655 0.92166 0.99049 0.91487 1.21200 1.03018 0.89203 0.96188 1.21067 0.92405 0.83996 1.09537 1.43503 1.01294 1.02543 0.98163 1.94593 0.95203 1.93640 1.52315 1.94585 1.65596 1.23496 1.52715 1.20817 0.92784 0.99080 1.00087 1.17149 0.78326 0.91353 0.98211 1.91705 1.26341 1.96785 1.92425 0.92239 0.95175 0.95164 0.77317 0.87977 0.87984 0.80156 0.81012 0.80657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.05 13.29 55.43 0.74 -24.32 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.55 -14.12 9.28 -34.44 -0.32 -14.44 16 8 H 0.06 1.53 7.60 -52.48 -0.40 1.13 16 9 C 0.25 6.24 5.43 -5.19 -0.03 6.22 16 10 N -0.70 -13.42 5.55 -61.47 -0.34 -13.76 16 11 C 0.50 8.98 7.91 -10.99 -0.09 8.90 16 12 O -0.53 -11.78 16.50 -14.11 -0.23 -12.02 16 13 C 0.05 0.64 5.95 36.01 0.21 0.86 16 14 O -0.32 -4.12 9.01 -47.26 -0.43 -4.55 16 15 C 0.50 5.82 7.89 34.53 0.27 6.10 16 16 O -0.48 -6.50 15.13 -19.26 -0.29 -6.79 16 17 C -0.11 -0.95 5.88 -104.93 -0.62 -1.57 16 18 C -0.02 -0.17 9.62 -39.18 -0.38 -0.54 16 19 C -0.08 -0.46 9.53 -39.64 -0.38 -0.84 16 20 C 0.01 0.09 6.85 -79.87 -0.55 -0.46 16 21 N 0.02 0.20 4.45 34.00 0.15 0.35 16 22 O -0.14 -1.37 18.43 -29.46 -0.54 -1.91 16 23 O -0.15 -1.46 18.43 -29.46 -0.54 -2.00 16 24 C -0.11 -0.72 9.52 -39.56 -0.38 -1.10 16 25 C 0.17 1.40 7.29 -38.94 -0.28 1.12 16 26 F -0.09 -0.94 15.55 2.25 0.04 -0.91 16 27 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.39 6.24 8.32 -40.82 -0.34 5.90 16 31 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.18 1.12 7.61 -52.49 -0.40 0.72 16 34 H 0.17 0.73 7.59 -52.48 -0.40 0.33 16 35 H 0.18 0.89 7.59 -52.49 -0.40 0.50 16 LS Contribution 337.39 15.07 5.08 5.08 Total: -1.00 -32.56 337.39 -6.77 -39.33 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -2.76 Total: 0.55 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -2.62 Total: 5.86 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.55 Total: -37.73 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -2.04 Total: -27.26 kcal Atomic # 9 Polarization: -0.94 SS G_CDS: 0.04 Total: -0.91 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.56 -6.77 -39.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052180967.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.327 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds