Wall clock time and date at job start Fri Apr 10 2020 18:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99864 * 2 1 4 4 H 1.48501 * 109.47109 * 240.00161 * 3 2 1 5 5 H 1.48501 * 109.46775 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47071 * 120.00021 * 3 2 1 7 7 C 1.37877 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99881 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46960 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99758 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00201 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00233 * 180.02562 * 11 10 9 14 14 O 1.45195 * 109.47406 * 180.02562 * 13 11 10 15 15 C 1.34733 * 117.00160 * 180.02562 * 14 13 11 16 16 O 1.21493 * 119.99482 * 359.97438 * 15 14 13 17 17 C 1.47559 * 120.00161 * 179.97438 * 15 14 13 18 18 C 1.39714 * 120.17201 * 0.02562 * 17 15 14 19 19 C 1.37835 * 119.87053 * 179.97438 * 18 17 15 20 20 C 1.38471 * 120.22982 * 359.97438 * 19 18 17 21 21 N 1.48021 * 119.82834 * 180.02562 * 20 19 18 22 22 O 1.21799 * 119.99708 * 359.97438 * 21 20 19 23 23 O 1.21802 * 119.99913 * 180.02562 * 21 20 19 24 24 C 1.38209 * 120.34832 * 359.75383 * 20 19 18 25 25 C 1.38318 * 120.11934 * 0.50388 * 24 20 19 26 26 F 1.35104 * 120.11114 * 179.76855 * 25 24 20 27 27 H 0.96995 * 119.99922 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47312 * 59.99435 * 9 7 2 29 29 H 1.09007 * 109.47184 * 299.99244 * 9 7 2 30 30 H 0.96991 * 120.00073 * 359.97438 * 10 9 7 31 31 H 1.08998 * 109.47008 * 60.00394 * 13 11 10 32 32 H 1.09007 * 109.46639 * 300.00722 * 13 11 10 33 33 H 1.07993 * 120.06664 * 359.97438 * 18 17 15 34 34 H 1.08007 * 119.88792 * 180.02562 * 19 18 17 35 35 H 1.08001 * 119.93968 * 180.27403 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5616 -5.1050 0.0011 13 6 2.7333 -6.0287 0.0016 14 8 2.0073 -7.2862 0.0015 15 6 2.7412 -8.4162 0.0025 16 8 3.9544 -8.3525 0.0030 17 6 2.0713 -9.7309 0.0031 18 6 0.6763 -9.8083 0.0020 19 6 0.0570 -11.0397 0.0019 20 6 0.8127 -12.2000 0.0024 21 7 0.1384 -13.5178 0.0018 22 8 -1.0780 -13.5793 0.0013 23 8 0.8000 -14.5404 0.0027 24 6 2.1932 -12.1343 -0.0021 25 6 2.8296 -10.9063 0.0033 26 9 4.1792 -10.8423 0.0035 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8904 30 1 3.1568 -3.4353 0.0002 31 1 3.3598 -5.9707 0.8917 32 1 3.3601 -5.9713 -0.8883 33 1 0.0843 -8.9050 0.0011 34 1 -1.0214 -11.0998 0.0006 35 1 2.7761 -13.0435 -0.0062 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052180967.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:58 Heat of formation + Delta-G solvation = -154.636181 kcal Electronic energy + Delta-G solvation = -25707.040952 eV Core-core repulsion = 21201.951196 eV Total energy + Delta-G solvation = -4505.089756 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.084 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.44622 -43.44279 -42.02155 -40.60780 -40.02308 -37.83886 -37.75898 -36.18868 -34.42372 -33.82395 -32.36601 -30.90383 -28.98001 -28.10963 -25.10879 -24.61023 -24.33210 -22.59636 -21.67199 -20.83690 -20.01628 -19.71874 -19.12519 -18.78679 -18.31802 -18.06761 -17.84309 -17.53643 -17.36062 -17.09516 -16.93801 -16.23263 -16.20537 -15.64298 -15.19149 -14.75167 -14.65293 -14.44139 -14.06841 -14.03978 -13.82539 -13.67776 -13.28446 -12.96441 -12.82692 -12.69031 -12.51593 -12.39297 -12.24797 -12.08193 -12.05246 -11.52502 -11.14074 -10.94076 -10.80742 -10.51222 -9.93220 -8.29787 -6.46042 -1.84048 -0.56313 -0.30656 0.00902 0.88172 0.93339 1.44774 1.47428 1.53894 1.55837 1.88157 2.27448 2.41450 2.46023 2.92812 3.05633 3.14646 3.16729 3.33244 3.64004 3.75447 3.97342 4.01469 4.09275 4.31111 4.43820 4.51999 4.83312 4.88938 5.08715 5.09534 5.22747 5.41051 5.61793 5.82326 6.20567 6.29182 6.62706 6.76200 7.20045 7.34640 8.81753 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.029375 B = 0.001985 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.948632 B =14103.881871 C =15036.382520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.558 4.558 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.699 5.699 11 C 0.501 3.499 12 O -0.580 6.580 13 C 0.061 3.939 14 O -0.330 6.330 15 C 0.509 3.491 16 O -0.501 6.501 17 C -0.116 4.116 18 C -0.015 4.015 19 C -0.061 4.061 20 C 0.010 3.990 21 N 0.023 4.977 22 O -0.148 6.148 23 O -0.161 6.161 24 C -0.094 4.094 25 C 0.165 3.835 26 F -0.106 7.106 27 H 0.269 0.731 28 H -0.006 1.006 29 H -0.006 1.006 30 H 0.413 0.587 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.188 0.812 34 H 0.193 0.807 35 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.170 -23.658 -0.004 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.596 4.596 8 H 0.104 0.896 9 C 0.145 3.855 10 N -0.350 5.350 11 C 0.286 3.714 12 O -0.460 6.460 13 C -0.015 4.015 14 O -0.245 6.245 15 C 0.353 3.647 16 O -0.390 6.390 17 C -0.119 4.119 18 C -0.034 4.034 19 C -0.080 4.080 20 C -0.073 4.073 21 N 0.544 4.456 22 O -0.367 6.367 23 O -0.376 6.376 24 C -0.113 4.113 25 C 0.145 3.855 26 F -0.084 7.084 27 H 0.078 0.922 28 H 0.012 0.988 29 H 0.012 0.988 30 H 0.249 0.751 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.205 0.795 34 H 0.210 0.790 35 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 5.937 -22.983 -0.006 23.738 hybrid contribution 0.648 0.762 0.000 1.000 sum 6.584 -22.221 -0.005 23.176 Atomic orbital electron populations 1.70112 1.08145 1.28662 1.49772 1.26017 0.95764 1.03767 0.93912 0.85239 0.77922 0.76817 0.79445 1.18746 1.21269 1.18755 1.21588 0.94429 0.90489 1.53090 0.89643 1.18620 0.88516 0.83654 0.94721 1.46042 1.11783 1.04765 1.72438 1.20580 0.89263 0.84584 0.76926 1.90691 1.18668 1.85228 1.51408 1.22864 0.92652 0.78280 1.07741 1.86543 1.40300 1.14162 1.83526 1.20883 0.85378 0.84978 0.73434 1.90945 1.14940 1.87956 1.45143 1.19596 0.95458 0.89229 1.07587 1.21681 0.91278 0.99561 0.90869 1.21399 1.03968 0.88278 0.94338 1.21115 0.92625 0.83339 1.10186 1.43692 1.01209 1.02989 0.97718 1.94590 0.95597 1.93882 1.52602 1.94585 1.65527 1.24258 1.53224 1.20878 0.92657 0.99099 0.98705 1.17154 0.77823 0.91565 0.98991 1.91677 1.27244 1.96849 1.92668 0.92218 0.98805 0.98794 0.75104 0.85300 0.85305 0.79510 0.78970 0.79108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.87 13.29 21.45 0.28 -53.59 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.98 40.65 29.54 68.60 2.03 42.68 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 5 H -0.29 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 7 C -0.56 -28.69 9.28 25.60 0.24 -28.45 16 8 H 0.09 3.92 7.60 -2.91 -0.02 3.90 16 9 C 0.27 13.67 5.43 85.63 0.46 14.13 16 10 N -0.70 -26.46 5.55 -466.78 -2.59 -29.05 16 11 C 0.50 17.81 7.91 87.66 0.69 18.50 16 12 O -0.58 -26.08 16.50 15.76 0.26 -25.82 16 13 C 0.06 1.46 5.95 71.24 0.42 1.89 16 14 O -0.33 -8.06 9.01 -50.05 -0.45 -8.51 16 15 C 0.51 11.02 7.89 70.28 0.55 11.57 16 16 O -0.50 -12.78 15.13 19.86 0.30 -12.48 16 17 C -0.12 -1.87 5.88 -20.06 -0.12 -1.98 16 18 C -0.02 -0.18 9.62 22.53 0.22 0.04 16 19 C -0.06 -0.59 9.53 22.23 0.21 -0.38 16 20 C 0.01 0.13 6.85 36.42 0.25 0.38 16 21 N 0.02 0.39 4.45 -46.34 -0.21 0.18 16 22 O -0.15 -2.73 18.43 18.89 0.35 -2.38 16 23 O -0.16 -3.00 18.43 18.88 0.35 -2.65 16 24 C -0.09 -1.09 9.52 22.28 0.21 -0.88 16 25 C 0.17 2.47 7.29 22.69 0.17 2.64 16 26 F -0.11 -2.00 15.55 44.97 0.70 -1.30 16 27 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 28 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 29 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 30 H 0.41 12.40 8.32 -92.72 -0.77 11.63 16 31 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.13 2.47 8.14 -2.38 -0.02 2.45 16 33 H 0.19 2.01 7.61 -2.91 -0.02 1.99 16 34 H 0.19 1.11 7.59 -2.91 -0.02 1.09 16 35 H 0.19 1.58 7.59 -2.91 -0.02 1.56 16 Total: -1.00 -72.12 337.39 5.21 -66.92 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.41 Total: 7.80 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 3.77 Total: 18.20 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -2.51 Total: -82.45 kcal Atomic # 8 Polarization: -52.64 SS G_CDS: 0.81 Total: -51.84 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.70 Total: -1.30 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -72.12 5.21 -66.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052180967.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.721 kcal (2) G-P(sol) polarization free energy of solvation -72.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds