Wall clock time and date at job start Fri Apr 10 2020 18:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34237 * 116.99764 * 2 1 4 4 O 1.20826 * 119.99914 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99462 * 179.97438 * 3 2 1 6 6 N 1.46507 * 109.46894 * 179.97438 * 5 3 2 7 7 C 1.37092 * 120.00263 * 263.99556 * 6 5 3 8 8 H 1.07999 * 119.99602 * 197.00452 * 7 6 5 9 9 C 1.38950 * 120.00029 * 16.99847 * 7 6 5 10 10 N 1.31404 * 119.99956 * 21.27569 * 9 7 6 11 11 Si 1.86805 * 119.99854 * 201.26951 * 9 7 6 12 12 H 1.48497 * 109.47217 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.46857 * 120.00406 * 11 9 7 14 14 H 1.48504 * 109.46994 * 240.00354 * 11 9 7 15 15 C 1.34783 * 119.99409 * 83.99102 * 6 5 3 16 16 O 1.21286 * 120.00177 * 0.02562 * 15 6 5 17 17 C 1.50699 * 119.99613 * 179.97438 * 15 6 5 18 18 N 1.46501 * 109.46853 * 180.02562 * 17 15 6 19 19 C 1.34782 * 126.58698 * 125.00944 * 18 17 15 20 20 C 1.36662 * 106.83666 * 180.26354 * 19 18 17 21 21 C 1.47382 * 125.78304 * 179.73884 * 20 19 18 22 22 O 1.21517 * 119.99791 * 359.97438 * 21 20 19 23 23 O 1.34755 * 120.00333 * 179.97438 * 21 20 19 24 24 C 1.45197 * 116.99947 * 179.97438 * 23 21 20 25 25 N 1.34448 * 108.43626 * 359.56059 * 20 19 18 26 26 N 1.28755 * 109.51144 * 0.44614 * 25 20 19 27 27 H 1.09004 * 109.46889 * 300.00262 * 1 2 3 28 28 H 1.08995 * 109.47159 * 60.00328 * 1 2 3 29 29 H 1.08993 * 109.46961 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47486 * 60.00447 * 5 3 2 31 31 H 1.08996 * 109.47830 * 299.99853 * 5 3 2 32 32 H 0.97001 * 120.00228 * 179.97438 * 10 9 7 33 33 H 1.08999 * 109.46791 * 60.00424 * 17 15 6 34 34 H 1.08996 * 109.47290 * 300.00365 * 17 15 6 35 35 H 1.07999 * 126.57709 * 359.97438 * 19 18 17 36 36 H 1.09001 * 109.47338 * 299.99636 * 24 23 21 37 37 H 1.08997 * 109.47716 * 59.99614 * 24 23 21 38 38 H 1.09004 * 109.46819 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.2957 3.3012 -1.1811 8 1 4.8548 4.2252 -1.1731 9 6 3.8947 2.7422 -2.3884 10 7 2.8950 1.8899 -2.4179 11 14 4.7768 3.2024 -3.9694 12 1 5.8591 4.1734 -3.6679 13 1 5.3627 1.9832 -4.5822 14 1 3.8100 3.8160 -4.9150 15 6 4.0551 3.3614 1.1603 16 8 3.7777 2.8115 2.2052 17 6 4.4829 4.8063 1.1597 18 7 4.4826 5.3163 2.5331 19 6 5.5147 5.9007 3.1733 20 6 5.0757 6.2130 4.4293 21 6 5.8733 6.8640 5.4839 22 8 7.0294 7.1706 5.2693 23 8 5.3206 7.1193 6.6860 24 6 6.1652 7.7620 7.6768 25 7 3.7918 5.8292 4.5386 26 7 3.4085 5.2903 3.4339 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.9564 0.7806 -0.8892 31 1 3.9558 0.7810 0.8908 32 1 2.6148 1.5000 -3.2607 33 1 3.7893 5.3903 0.5548 34 1 5.4866 4.8879 0.7424 35 1 6.5009 6.0826 2.7723 36 1 7.0308 7.1315 7.8804 37 1 6.5002 8.7274 7.2976 38 1 5.5987 7.9099 8.5962 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353012016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:35 Heat of formation + Delta-G solvation = -79.760769 kcal Electronic energy + Delta-G solvation = -27689.789334 eV Core-core repulsion = 23343.699475 eV Total energy + Delta-G solvation = -4346.089859 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.02022 -40.08743 -39.60922 -38.48225 -36.44815 -35.67385 -34.81740 -34.14335 -31.87453 -31.02690 -29.52259 -28.11550 -27.40155 -26.21147 -24.87262 -23.73427 -22.30768 -20.94473 -20.42432 -19.53772 -18.34194 -17.23669 -17.02430 -16.80464 -16.67218 -16.43968 -15.85462 -15.62067 -15.38966 -15.14254 -14.63235 -14.48074 -14.27920 -14.06512 -13.74526 -13.31044 -12.95460 -12.77754 -12.57887 -12.34308 -12.00021 -11.85920 -11.67747 -11.49400 -11.34964 -11.07944 -10.98924 -10.86149 -10.79780 -10.68132 -10.58163 -10.34629 -9.90072 -9.78327 -9.19716 -9.17860 -8.86475 -8.22896 -6.75876 -4.28489 1.19760 1.77306 2.14075 2.73899 2.89153 3.04086 3.07432 3.13030 3.22617 3.56774 3.74526 3.89007 4.21427 4.35961 4.67037 4.75256 4.90642 4.99920 5.02868 5.07708 5.37834 5.47217 5.49547 5.64750 5.69506 5.74608 5.87125 5.91953 6.09073 6.24496 6.25596 6.40938 6.51122 7.03136 7.23353 7.41471 7.64334 7.91330 8.25008 8.69039 8.93818 9.04869 9.42328 10.30504 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.003272 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.239004 B = 8554.905428 C = 9953.253925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.484 3.516 4 O -0.496 6.496 5 C 0.158 3.842 6 N -0.418 5.418 7 C -0.354 4.354 8 H 0.106 0.894 9 C 0.045 3.955 10 N -0.856 5.856 11 Si 0.928 3.072 12 H -0.266 1.266 13 H -0.277 1.277 14 H -0.280 1.280 15 C 0.453 3.547 16 O -0.575 6.575 17 C 0.117 3.883 18 N -0.331 5.331 19 C 0.100 3.900 20 C -0.106 4.106 21 C 0.564 3.436 22 O -0.513 6.513 23 O -0.340 6.340 24 C 0.036 3.964 25 N -0.200 5.200 26 N -0.015 5.015 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.276 0.724 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.206 0.794 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.354 4.079 5.356 8.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.325 3.675 4 O -0.381 6.381 5 C 0.033 3.967 6 N -0.137 5.137 7 C -0.481 4.481 8 H 0.123 0.877 9 C -0.162 4.162 10 N -0.493 5.493 11 Si 0.753 3.247 12 H -0.190 1.190 13 H -0.202 1.202 14 H -0.206 1.206 15 C 0.240 3.760 16 O -0.459 6.459 17 C -0.007 4.007 18 N -0.113 5.113 19 C -0.058 4.058 20 C -0.242 4.242 21 C 0.407 3.593 22 O -0.401 6.401 23 O -0.255 6.255 24 C -0.057 4.057 25 N -0.075 5.075 26 N 0.003 4.997 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.143 0.857 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.222 0.778 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.768 3.668 5.835 7.855 hybrid contribution 1.165 0.538 -1.390 1.892 sum 4.932 4.206 4.445 7.860 Atomic orbital electron populations 1.22952 0.78434 1.01919 1.01761 1.86443 1.21883 1.35282 1.85662 1.23808 0.92153 0.80711 0.70857 1.90535 1.66431 1.36329 1.44766 1.20486 0.87592 0.84759 1.03868 1.43307 1.56542 1.08253 1.05638 1.19634 1.35605 1.10576 0.82277 0.87652 1.25262 0.94448 0.96652 0.99874 1.69853 1.21525 1.29502 1.28393 0.85864 0.79309 0.78764 0.80724 1.19003 1.20204 1.20591 1.19664 0.84338 0.87114 0.84857 1.90677 1.54548 1.69092 1.31567 1.21875 1.06201 0.96699 0.75931 1.50213 1.09228 1.38324 1.13520 1.23235 0.95273 0.95117 0.92160 1.20058 0.93716 1.16116 0.94336 1.19460 0.84092 0.74752 0.80948 1.90851 1.17274 1.50619 1.81333 1.86665 1.44291 1.72110 1.22467 1.23302 0.95184 0.97335 0.89923 1.74818 1.09609 1.07110 1.15994 1.82304 1.07774 1.16898 0.92722 0.93003 0.92555 0.89518 0.85704 0.89733 0.91282 0.85468 0.85591 0.77770 0.91801 0.91838 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.56 101.05 1.07 1.81 16 2 O -0.38 -7.84 10.57 -39.28 -0.41 -8.25 16 3 C 0.48 11.49 6.13 36.00 0.22 11.71 16 4 O -0.50 -13.31 15.76 -18.75 -0.30 -13.61 16 5 C 0.16 3.52 5.14 -5.19 -0.03 3.50 16 6 N -0.42 -9.41 2.18 -116.09 -0.25 -9.66 16 7 C -0.35 -7.71 9.14 -14.94 -0.14 -7.84 16 8 H 0.11 2.01 6.56 -52.49 -0.34 1.67 16 9 C 0.04 0.99 4.88 -17.47 -0.09 0.91 16 10 N -0.86 -20.34 9.27 55.50 0.51 -19.83 16 11 Si 0.93 17.14 29.60 -169.99 -5.03 12.11 16 12 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 13 H -0.28 -5.15 7.11 56.52 0.40 -4.74 16 14 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 15 C 0.45 9.94 7.45 -10.98 -0.08 9.86 16 16 O -0.58 -14.44 15.41 5.55 0.09 -14.35 16 17 C 0.12 1.96 5.47 -5.19 -0.03 1.93 16 18 N -0.33 -5.77 3.41 -62.23 -0.21 -5.98 16 19 C 0.10 1.46 11.27 -16.83 -0.19 1.27 16 20 C -0.11 -1.75 7.02 -83.57 -0.59 -2.33 16 21 C 0.56 8.56 7.96 34.45 0.27 8.83 16 22 O -0.51 -7.99 16.65 -19.28 -0.32 -8.31 16 23 O -0.34 -4.72 10.57 -40.64 -0.43 -5.15 16 24 C 0.04 0.33 10.57 101.05 1.07 1.40 16 25 N -0.20 -3.86 12.39 32.83 0.41 -3.45 16 26 N -0.02 -0.31 12.88 60.35 0.78 0.46 16 27 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 28 H 0.06 0.99 8.13 -51.93 -0.42 0.56 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.13 2.72 6.38 -51.93 -0.33 2.39 16 31 H 0.08 1.77 7.61 -51.93 -0.40 1.38 16 32 H 0.28 6.27 8.31 -40.82 -0.34 5.93 16 33 H 0.13 2.07 8.10 -51.93 -0.42 1.65 16 34 H 0.13 1.60 7.63 -51.93 -0.40 1.20 16 35 H 0.21 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 347.06 15.07 5.23 5.23 Total: -1.00 -33.30 347.06 -2.43 -35.73 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -3.98 Total: 4.01 kcal Atomic # 6 Polarization: 29.56 SS G_CDS: 1.49 Total: 31.06 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 1.23 Total: -38.46 kcal Atomic # 8 Polarization: -48.31 SS G_CDS: -1.38 Total: -49.68 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.30 -2.43 -35.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353012016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.031 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds