Wall clock time and date at job start Fri Apr 10 2020 18:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34237 * 116.99764 * 2 1 4 4 O 1.20826 * 119.99914 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99462 * 179.97438 * 3 2 1 6 6 N 1.46507 * 109.46894 * 179.97438 * 5 3 2 7 7 C 1.37092 * 120.00263 * 263.99556 * 6 5 3 8 8 H 1.07999 * 119.99602 * 197.00452 * 7 6 5 9 9 C 1.38950 * 120.00029 * 16.99847 * 7 6 5 10 10 N 1.31404 * 119.99956 * 21.27569 * 9 7 6 11 11 Si 1.86805 * 119.99854 * 201.26951 * 9 7 6 12 12 H 1.48497 * 109.47217 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.46857 * 120.00406 * 11 9 7 14 14 H 1.48504 * 109.46994 * 240.00354 * 11 9 7 15 15 C 1.34783 * 119.99409 * 83.99102 * 6 5 3 16 16 O 1.21286 * 120.00177 * 0.02562 * 15 6 5 17 17 C 1.50699 * 119.99613 * 179.97438 * 15 6 5 18 18 N 1.46501 * 109.46853 * 180.02562 * 17 15 6 19 19 C 1.34782 * 126.58698 * 125.00944 * 18 17 15 20 20 C 1.36662 * 106.83666 * 180.26354 * 19 18 17 21 21 C 1.47382 * 125.78304 * 179.73884 * 20 19 18 22 22 O 1.21517 * 119.99791 * 359.97438 * 21 20 19 23 23 O 1.34755 * 120.00333 * 179.97438 * 21 20 19 24 24 C 1.45197 * 116.99947 * 179.97438 * 23 21 20 25 25 N 1.34448 * 108.43626 * 359.56059 * 20 19 18 26 26 N 1.28755 * 109.51144 * 0.44614 * 25 20 19 27 27 H 1.09004 * 109.46889 * 300.00262 * 1 2 3 28 28 H 1.08995 * 109.47159 * 60.00328 * 1 2 3 29 29 H 1.08993 * 109.46961 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47486 * 60.00447 * 5 3 2 31 31 H 1.08996 * 109.47830 * 299.99853 * 5 3 2 32 32 H 0.97001 * 120.00228 * 179.97438 * 10 9 7 33 33 H 1.08999 * 109.46791 * 60.00424 * 17 15 6 34 34 H 1.08996 * 109.47290 * 300.00365 * 17 15 6 35 35 H 1.07999 * 126.57709 * 359.97438 * 19 18 17 36 36 H 1.09001 * 109.47338 * 299.99636 * 24 23 21 37 37 H 1.08997 * 109.47716 * 59.99614 * 24 23 21 38 38 H 1.09004 * 109.46819 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.2957 3.3012 -1.1811 8 1 4.8548 4.2252 -1.1731 9 6 3.8947 2.7422 -2.3884 10 7 2.8950 1.8899 -2.4179 11 14 4.7768 3.2024 -3.9694 12 1 5.8591 4.1734 -3.6679 13 1 5.3627 1.9832 -4.5822 14 1 3.8100 3.8160 -4.9150 15 6 4.0551 3.3614 1.1603 16 8 3.7777 2.8115 2.2052 17 6 4.4829 4.8063 1.1597 18 7 4.4826 5.3163 2.5331 19 6 5.5147 5.9007 3.1733 20 6 5.0757 6.2130 4.4293 21 6 5.8733 6.8640 5.4839 22 8 7.0294 7.1706 5.2693 23 8 5.3206 7.1193 6.6860 24 6 6.1652 7.7620 7.6768 25 7 3.7918 5.8292 4.5386 26 7 3.4085 5.2903 3.4339 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.9564 0.7806 -0.8892 31 1 3.9558 0.7810 0.8908 32 1 2.6148 1.5000 -3.2607 33 1 3.7893 5.3903 0.5548 34 1 5.4866 4.8879 0.7424 35 1 6.5009 6.0826 2.7723 36 1 7.0308 7.1315 7.8804 37 1 6.5002 8.7274 7.2976 38 1 5.5987 7.9099 8.5962 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353012016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:35 Heat of formation + Delta-G solvation = -102.857891 kcal Electronic energy + Delta-G solvation = -27690.790900 eV Core-core repulsion = 23343.699475 eV Total energy + Delta-G solvation = -4347.091425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.31635 -41.39645 -41.15388 -40.17574 -37.52695 -37.38858 -36.60013 -35.54623 -33.57240 -32.28490 -31.07591 -29.38147 -28.47355 -27.74155 -26.51133 -24.90747 -23.68603 -22.33035 -21.91223 -21.17750 -19.72927 -18.66341 -18.49857 -18.33580 -18.08305 -17.56929 -17.35794 -17.13593 -16.95675 -16.57406 -16.10222 -15.95163 -15.74660 -15.47710 -14.80781 -14.60930 -14.34600 -14.24666 -14.15492 -13.58035 -13.44574 -13.16794 -13.11413 -12.88680 -12.85940 -12.59076 -12.50251 -12.32221 -11.99031 -11.83621 -11.79467 -11.72936 -11.59624 -11.55297 -10.97811 -10.62183 -10.40817 -9.96455 -8.41422 -5.99268 0.03516 0.43580 0.92876 1.38432 1.55891 1.64165 1.67443 1.68112 1.75937 1.92424 2.17375 2.32264 2.68463 3.07440 3.17072 3.57449 3.78796 3.85098 3.94856 4.21693 4.25520 4.32589 4.32939 4.38746 4.39431 4.44196 4.48319 4.61949 4.66736 4.70921 4.76577 5.20365 5.26567 5.42622 5.56053 5.67598 6.23911 6.52814 6.94042 7.01341 7.16810 7.35277 7.75927 8.65641 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.003272 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.239004 B = 8554.905428 C = 9953.253925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.377 6.377 3 C 0.484 3.516 4 O -0.536 6.536 5 C 0.156 3.844 6 N -0.427 5.427 7 C -0.363 4.363 8 H 0.136 0.864 9 C 0.001 3.999 10 N -0.892 5.892 11 Si 0.996 3.004 12 H -0.243 1.243 13 H -0.281 1.281 14 H -0.294 1.294 15 C 0.441 3.559 16 O -0.615 6.615 17 C 0.124 3.876 18 N -0.335 5.335 19 C 0.126 3.874 20 C -0.122 4.122 21 C 0.569 3.431 22 O -0.518 6.518 23 O -0.356 6.356 24 C 0.028 3.972 25 N -0.218 5.218 26 N -0.072 5.072 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.090 0.910 32 H 0.273 0.727 33 H 0.133 0.867 34 H 0.177 0.823 35 H 0.255 0.745 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.509 5.171 4.924 10.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.294 6.294 3 C 0.327 3.673 4 O -0.424 6.424 5 C 0.030 3.970 6 N -0.146 5.146 7 C -0.489 4.489 8 H 0.153 0.847 9 C -0.203 4.203 10 N -0.530 5.530 11 Si 0.820 3.180 12 H -0.166 1.166 13 H -0.207 1.207 14 H -0.221 1.221 15 C 0.230 3.770 16 O -0.502 6.502 17 C 0.001 3.999 18 N -0.117 5.117 19 C -0.032 4.032 20 C -0.259 4.259 21 C 0.412 3.588 22 O -0.407 6.407 23 O -0.271 6.271 24 C -0.064 4.064 25 N -0.092 5.092 26 N -0.053 5.053 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.152 0.848 30 H 0.144 0.856 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.151 0.849 34 H 0.195 0.805 35 H 0.271 0.729 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.924 4.755 5.421 9.332 hybrid contribution 0.468 0.175 -1.149 1.253 sum 6.392 4.930 4.271 9.133 Atomic orbital electron populations 1.23282 0.76209 1.04850 1.01146 1.86421 1.24090 1.33892 1.85037 1.24121 0.92776 0.80788 0.69661 1.90499 1.67381 1.37653 1.46857 1.20537 0.86902 0.85596 1.03963 1.43575 1.56356 1.08325 1.06330 1.20272 1.35341 1.11406 0.81923 0.84699 1.26149 0.94698 0.96603 1.02801 1.69968 1.23149 1.31122 1.28748 0.84821 0.78226 0.78479 0.76465 1.16608 1.20657 1.22125 1.20507 0.83555 0.88981 0.83994 1.90648 1.56115 1.70544 1.32873 1.21969 1.09009 0.92902 0.76050 1.50235 1.09381 1.38629 1.13501 1.24019 0.95919 0.92274 0.90973 1.20530 0.93177 1.16441 0.95776 1.19267 0.83770 0.74561 0.81215 1.90840 1.17252 1.51028 1.81577 1.86645 1.45565 1.72276 1.22590 1.23678 0.95533 0.97421 0.89806 1.74764 1.11231 1.07215 1.16000 1.82270 1.09859 1.19270 0.93913 0.93368 0.93458 0.84803 0.85634 0.89247 0.91709 0.84919 0.80543 0.72888 0.91260 0.90985 0.85132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 10.56 113.37 1.20 2.50 16 2 O -0.38 -15.95 10.57 -51.48 -0.54 -16.50 16 3 C 0.48 23.52 6.13 71.23 0.44 23.96 16 4 O -0.54 -29.63 15.76 21.96 0.35 -29.29 16 5 C 0.16 7.04 5.14 85.63 0.44 7.48 16 6 N -0.43 -19.05 2.18 -639.59 -1.39 -20.45 16 7 C -0.36 -15.22 9.14 84.04 0.77 -14.45 16 8 H 0.14 4.67 6.56 -2.91 -0.02 4.65 16 9 C 0.00 0.03 4.88 84.93 0.41 0.45 16 10 N -0.89 -42.72 9.27 21.66 0.20 -42.52 16 11 Si 1.00 33.98 29.60 68.60 2.03 36.01 16 12 H -0.24 -7.34 7.11 99.48 0.71 -6.63 16 13 H -0.28 -9.68 7.11 99.48 0.71 -8.97 16 14 H -0.29 -10.67 7.11 99.48 0.71 -9.96 16 15 C 0.44 19.13 7.45 87.66 0.65 19.78 16 16 O -0.62 -31.39 15.41 -3.05 -0.05 -31.44 16 17 C 0.12 3.88 5.47 85.63 0.47 4.35 16 18 N -0.34 -11.19 3.41 -350.81 -1.20 -12.38 16 19 C 0.13 3.33 11.27 83.87 0.95 4.27 16 20 C -0.12 -3.87 7.02 40.78 0.29 -3.58 16 21 C 0.57 16.38 7.96 70.23 0.56 16.93 16 22 O -0.52 -14.94 16.65 19.78 0.33 -14.61 16 23 O -0.36 -9.44 10.57 -56.66 -0.60 -10.04 16 24 C 0.03 0.46 10.57 113.37 1.20 1.66 16 25 N -0.22 -8.44 12.39 -50.04 -0.62 -9.06 16 26 N -0.07 -3.02 12.88 37.02 0.48 -2.54 16 27 H 0.05 1.65 8.13 -2.38 -0.02 1.63 16 28 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 29 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 30 H 0.13 5.58 6.38 -2.39 -0.02 5.56 16 31 H 0.09 3.85 7.61 -2.39 -0.02 3.83 16 32 H 0.27 12.59 8.31 -92.71 -0.77 11.82 16 33 H 0.13 4.05 8.10 -2.39 -0.02 4.03 16 34 H 0.18 3.65 7.63 -2.39 -0.02 3.64 16 35 H 0.26 3.83 8.06 -2.91 -0.02 3.81 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.13 1.34 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -75.30 347.06 7.47 -67.83 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 1.12 Total: 21.63 kcal Atomic # 6 Polarization: 55.99 SS G_CDS: 7.37 Total: 63.35 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -2.53 Total: -86.95 kcal Atomic # 8 Polarization: -101.36 SS G_CDS: -0.51 Total: -101.87 kcal Atomic # 14 Polarization: 33.98 SS G_CDS: 2.03 Total: 36.01 kcal Total: -75.30 7.47 -67.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353012016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.027 kcal (2) G-P(sol) polarization free energy of solvation -75.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds