Wall clock time and date at job start Fri Apr 10 2020 18:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48501 * 109.47101 * 269.99905 * 3 2 1 5 5 H 1.48501 * 109.47179 * 29.99951 * 3 2 1 6 6 H 1.48501 * 109.46949 * 150.00287 * 3 2 1 7 7 C 1.40227 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00021 * 163.05627 * 7 2 1 9 9 C 1.41111 * 119.99382 * 343.05813 * 7 2 1 10 10 C 1.40885 * 120.10921 * 334.52933 * 9 7 2 11 11 C 1.36306 * 119.89590 * 180.30311 * 10 9 7 12 12 C 1.40016 * 120.10434 * 359.47343 * 11 10 9 13 13 C 1.47649 * 119.89637 * 180.25839 * 12 11 10 14 14 O 1.21582 * 120.00250 * 180.25054 * 13 12 11 15 15 N 1.34776 * 120.00001 * 0.24992 * 13 12 11 16 16 C 1.46493 * 119.99933 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47138 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47126 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.47126 * 179.97438 * 18 17 16 20 20 S 1.81393 * 109.47135 * 179.97438 * 19 18 17 21 21 N 1.65602 * 104.44942 * 180.02562 * 20 19 18 22 22 O 1.42098 * 110.54429 * 291.62691 * 20 19 18 23 23 O 1.42107 * 110.54440 * 68.37887 * 20 19 18 24 24 C 1.40010 * 120.21022 * 0.51122 * 12 11 10 25 25 C 1.36316 * 120.10397 * 359.76645 * 24 12 11 26 26 H 0.97005 * 119.99903 * 359.97438 * 1 2 3 27 27 H 1.08006 * 120.05061 * 0.02804 * 10 9 7 28 28 H 1.08002 * 119.95526 * 179.70093 * 11 10 9 29 29 H 0.97004 * 119.99495 * 359.97438 * 15 13 12 30 30 H 1.08997 * 109.47349 * 299.99694 * 16 15 13 31 31 H 1.09002 * 109.47839 * 59.99997 * 16 15 13 32 32 H 1.08997 * 109.46964 * 300.00191 * 17 16 15 33 33 H 1.09003 * 109.46877 * 59.99897 * 17 16 15 34 34 H 1.09004 * 109.47279 * 299.99811 * 18 17 16 35 35 H 1.09003 * 109.47121 * 60.00299 * 18 17 16 36 36 H 1.08997 * 109.46964 * 300.00443 * 19 18 17 37 37 H 1.09003 * 109.46877 * 60.00149 * 19 18 17 38 38 H 0.97002 * 119.99958 * 0.02562 * 21 20 19 39 39 H 0.97001 * 119.99991 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.94657 * 179.75594 * 24 12 11 41 41 H 1.08001 * 120.05236 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4880 2.0464 -1.4001 5 1 1.4379 2.6527 0.7000 6 1 3.5380 1.4401 0.7000 7 6 2.0076 -1.2144 -0.0005 8 1 3.0524 -1.2346 -0.2731 9 6 1.3478 -2.4100 0.3551 10 6 0.2175 -2.3706 1.1951 11 6 -0.4127 -3.5287 1.5408 12 6 0.0549 -4.7552 1.0536 13 6 -0.6347 -6.0064 1.4265 14 8 -0.2276 -7.0729 1.0082 15 7 -1.7156 -5.9662 2.2305 16 6 -2.3995 -7.2076 2.6009 17 6 -3.5843 -6.8845 3.5135 18 6 -4.2989 -8.1810 3.8998 19 6 -5.4834 -7.8579 4.8130 20 16 -6.3311 -9.3950 5.2704 21 7 -7.5763 -8.9055 6.2462 22 8 -6.9758 -9.9644 4.1394 23 8 -5.5092 -10.1841 6.1196 24 6 1.1776 -4.7995 0.2182 25 6 1.8178 -3.6471 -0.1284 26 1 -0.4850 0.8401 0.0004 27 1 -0.1464 -1.4246 1.5681 28 1 -1.2764 -3.5000 2.1887 29 1 -2.0402 -5.1153 2.5645 30 1 -2.7591 -7.7068 1.7011 31 1 -1.7046 -7.8626 3.1265 32 1 -3.2243 -6.3856 4.4133 33 1 -4.2794 -6.2295 2.9883 34 1 -4.6590 -8.6795 2.9998 35 1 -3.6040 -8.8364 4.4250 36 1 -5.1229 -7.3596 5.7129 37 1 -6.1784 -7.2024 4.2883 38 1 -7.6986 -7.9630 6.4405 39 1 -8.1834 -9.5612 6.6235 40 1 1.5370 -5.7483 -0.1520 41 1 2.6840 -3.6823 -0.7725 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355915631.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:52 Heat of formation + Delta-G solvation = -113.594353 kcal Electronic energy + Delta-G solvation = -23772.134127 eV Core-core repulsion = 19970.870349 eV Total energy + Delta-G solvation = -3801.263778 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.16135 -37.37253 -37.27421 -36.34291 -36.19917 -33.89776 -33.70880 -33.63729 -30.58226 -29.49518 -29.13393 -26.05854 -24.13407 -21.96302 -21.68075 -20.89669 -19.84256 -19.56579 -18.05580 -17.69029 -17.55792 -16.81370 -16.73806 -15.77445 -15.71967 -15.68375 -15.30029 -14.54844 -14.11963 -13.97024 -13.37150 -13.31326 -13.18936 -12.81660 -12.70315 -12.53713 -12.46877 -12.32650 -12.14344 -12.07259 -11.92289 -11.58563 -11.40433 -11.28559 -11.10509 -10.99484 -10.96639 -10.89807 -10.66065 -10.09048 -9.59194 -9.38594 -9.00885 -8.64580 -7.75474 -7.56665 -7.06125 -4.63444 -0.20198 2.20039 2.42762 2.88270 2.92094 2.98216 3.00334 3.19731 3.69581 3.71390 3.83504 3.84605 4.02187 4.41980 4.54119 4.65338 4.82518 4.92439 5.13543 5.34128 5.34944 5.50775 5.53895 5.57839 5.84198 5.94375 5.99863 6.15119 6.29121 6.54484 6.73803 6.79870 6.88832 7.02100 7.10131 7.40541 7.61754 7.75219 7.82781 8.04140 8.19769 8.36696 8.60073 8.71999 9.04197 9.85973 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.024595 B = 0.001819 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.186249 B =15389.584762 C =16269.304949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.128 3.872 10 C -0.177 4.177 11 C -0.063 4.063 12 C -0.284 4.284 13 C 0.571 3.429 14 O -0.575 6.575 15 N -0.744 5.744 16 C 0.119 3.881 17 C -0.123 4.123 18 C -0.110 4.110 19 C -0.618 4.618 20 S 2.612 3.388 21 N -1.254 6.254 22 O -0.963 6.963 23 O -0.963 6.963 24 C -0.022 4.022 25 C -0.238 4.238 26 H 0.286 0.714 27 H 0.120 0.880 28 H 0.088 0.912 29 H 0.397 0.603 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.412 0.588 39 H 0.419 0.581 40 H 0.101 0.899 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.316 -6.567 11.961 19.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.470 4.470 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.197 4.197 11 C -0.083 4.083 12 C -0.289 4.289 13 C 0.366 3.634 14 O -0.457 6.457 15 N -0.397 5.397 16 C -0.005 4.005 17 C -0.162 4.162 18 C -0.150 4.150 19 C -0.748 4.748 20 S 2.704 3.296 21 N -0.927 5.927 22 O -0.952 6.952 23 O -0.952 6.952 24 C -0.042 4.042 25 C -0.257 4.257 26 H 0.097 0.903 27 H 0.138 0.862 28 H 0.106 0.894 29 H 0.232 0.768 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.238 0.762 39 H 0.249 0.751 40 H 0.119 0.881 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.907 -8.170 11.290 19.688 hybrid contribution -0.302 2.153 0.465 2.223 sum -14.210 -6.017 11.755 19.398 Atomic orbital electron populations 1.69739 1.07903 1.30022 1.32007 1.26100 0.94832 1.01891 0.91901 0.86213 0.80709 0.79809 0.79575 1.19149 1.19814 1.18126 1.19838 0.98106 0.91064 1.37989 0.89713 1.17797 0.90418 0.92201 0.87097 1.20966 0.99883 0.96830 1.01975 1.20461 0.97383 0.92613 0.97794 1.18902 1.04445 0.91076 1.14450 1.18600 0.78665 0.89629 0.76541 1.90637 1.66717 1.32163 1.56162 1.45883 1.31811 1.09021 1.53000 1.21194 0.93171 0.87924 0.98221 1.21741 0.97244 0.96880 1.00372 1.21245 0.94804 0.99847 0.99085 1.30396 1.11427 1.22146 1.10855 1.04794 0.74379 0.76054 0.74325 1.53162 1.50453 1.18162 1.70877 1.93626 1.73590 1.75075 1.52893 1.93627 1.69299 1.66062 1.66211 1.20374 0.92904 0.97147 0.93739 1.20730 1.04551 0.92710 1.07738 0.90255 0.86211 0.89376 0.76769 0.91783 0.91801 0.90687 0.90665 0.89581 0.89599 0.84449 0.84444 0.76200 0.75111 0.88071 0.88345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.22 10.95 55.56 0.61 -17.62 16 2 C 0.07 1.70 5.15 -17.31 -0.09 1.61 16 3 Si 0.91 16.99 29.59 -169.99 -5.03 11.96 16 4 H -0.27 -4.93 7.11 56.52 0.40 -4.52 16 5 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 6 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 7 C -0.44 -10.86 9.05 -37.75 -0.34 -11.20 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 9 C 0.13 3.22 5.57 -106.80 -0.59 2.63 16 10 C -0.18 -4.26 8.63 -39.28 -0.34 -4.60 16 11 C -0.06 -1.37 9.47 -39.61 -0.38 -1.74 16 12 C -0.28 -6.41 5.89 -104.73 -0.62 -7.03 16 13 C 0.57 11.99 7.76 -12.42 -0.10 11.89 16 14 O -0.57 -13.67 16.32 5.29 0.09 -13.58 16 15 N -0.74 -11.84 5.50 -61.31 -0.34 -12.18 16 16 C 0.12 1.53 5.67 -4.04 -0.02 1.51 16 17 C -0.12 -1.03 5.33 -26.73 -0.14 -1.18 16 18 C -0.11 -0.78 5.22 -26.73 -0.14 -0.92 16 19 C -0.62 -2.64 6.09 37.16 0.23 -2.41 16 20 S 2.61 17.18 5.97 -107.50 -0.64 16.54 16 21 N -1.25 -4.12 9.43 60.35 0.57 -3.55 16 22 O -0.96 -10.36 18.10 -57.54 -1.04 -11.40 16 23 O -0.96 -10.32 18.10 -57.54 -1.04 -11.36 16 24 C -0.02 -0.53 9.52 -39.61 -0.38 -0.90 16 25 C -0.24 -5.71 9.73 -39.27 -0.38 -6.09 16 26 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 27 H 0.12 2.90 6.18 -52.48 -0.32 2.58 16 28 H 0.09 1.58 6.37 -52.49 -0.33 1.25 16 29 H 0.40 5.48 6.47 -40.82 -0.26 5.22 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.14 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.14 0.31 8.14 -51.92 -0.42 -0.11 16 38 H 0.41 0.12 8.83 -34.47 -0.30 -0.19 16 39 H 0.42 1.15 8.96 -34.47 -0.31 0.84 16 40 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 41 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 362.23 15.07 5.46 5.46 Total: -1.00 -35.74 362.23 -9.95 -45.69 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -5.29 Total: 8.48 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -3.29 Total: -18.44 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.84 Total: -33.34 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -2.00 Total: -36.35 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.96 kcal Atomic # 16 Polarization: 17.18 SS G_CDS: -0.64 Total: 16.54 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.74 -9.95 -45.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355915631.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.905 kcal (2) G-P(sol) polarization free energy of solvation -35.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds