Wall clock time and date at job start Fri Apr 10 2020 18:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48501 * 109.47101 * 269.99905 * 3 2 1 5 5 H 1.48501 * 109.47179 * 29.99951 * 3 2 1 6 6 H 1.48501 * 109.46949 * 150.00287 * 3 2 1 7 7 C 1.40227 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00021 * 163.05627 * 7 2 1 9 9 C 1.41111 * 119.99382 * 343.05813 * 7 2 1 10 10 C 1.40885 * 120.10921 * 334.52933 * 9 7 2 11 11 C 1.36306 * 119.89590 * 180.30311 * 10 9 7 12 12 C 1.40016 * 120.10434 * 359.47343 * 11 10 9 13 13 C 1.47649 * 119.89637 * 180.25839 * 12 11 10 14 14 O 1.21582 * 120.00250 * 180.25054 * 13 12 11 15 15 N 1.34776 * 120.00001 * 0.24992 * 13 12 11 16 16 C 1.46493 * 119.99933 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47138 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47126 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.47126 * 179.97438 * 18 17 16 20 20 S 1.81393 * 109.47135 * 179.97438 * 19 18 17 21 21 N 1.65602 * 104.44942 * 180.02562 * 20 19 18 22 22 O 1.42098 * 110.54429 * 291.62691 * 20 19 18 23 23 O 1.42107 * 110.54440 * 68.37887 * 20 19 18 24 24 C 1.40010 * 120.21022 * 0.51122 * 12 11 10 25 25 C 1.36316 * 120.10397 * 359.76645 * 24 12 11 26 26 H 0.97005 * 119.99903 * 359.97438 * 1 2 3 27 27 H 1.08006 * 120.05061 * 0.02804 * 10 9 7 28 28 H 1.08002 * 119.95526 * 179.70093 * 11 10 9 29 29 H 0.97004 * 119.99495 * 359.97438 * 15 13 12 30 30 H 1.08997 * 109.47349 * 299.99694 * 16 15 13 31 31 H 1.09002 * 109.47839 * 59.99997 * 16 15 13 32 32 H 1.08997 * 109.46964 * 300.00191 * 17 16 15 33 33 H 1.09003 * 109.46877 * 59.99897 * 17 16 15 34 34 H 1.09004 * 109.47279 * 299.99811 * 18 17 16 35 35 H 1.09003 * 109.47121 * 60.00299 * 18 17 16 36 36 H 1.08997 * 109.46964 * 300.00443 * 19 18 17 37 37 H 1.09003 * 109.46877 * 60.00149 * 19 18 17 38 38 H 0.97002 * 119.99958 * 0.02562 * 21 20 19 39 39 H 0.97001 * 119.99991 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.94657 * 179.75594 * 24 12 11 41 41 H 1.08001 * 120.05236 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4880 2.0464 -1.4001 5 1 1.4379 2.6527 0.7000 6 1 3.5380 1.4401 0.7000 7 6 2.0076 -1.2144 -0.0005 8 1 3.0524 -1.2346 -0.2731 9 6 1.3478 -2.4100 0.3551 10 6 0.2175 -2.3706 1.1951 11 6 -0.4127 -3.5287 1.5408 12 6 0.0549 -4.7552 1.0536 13 6 -0.6347 -6.0064 1.4265 14 8 -0.2276 -7.0729 1.0082 15 7 -1.7156 -5.9662 2.2305 16 6 -2.3995 -7.2076 2.6009 17 6 -3.5843 -6.8845 3.5135 18 6 -4.2989 -8.1810 3.8998 19 6 -5.4834 -7.8579 4.8130 20 16 -6.3311 -9.3950 5.2704 21 7 -7.5763 -8.9055 6.2462 22 8 -6.9758 -9.9644 4.1394 23 8 -5.5092 -10.1841 6.1196 24 6 1.1776 -4.7995 0.2182 25 6 1.8178 -3.6471 -0.1284 26 1 -0.4850 0.8401 0.0004 27 1 -0.1464 -1.4246 1.5681 28 1 -1.2764 -3.5000 2.1887 29 1 -2.0402 -5.1153 2.5645 30 1 -2.7591 -7.7068 1.7011 31 1 -1.7046 -7.8626 3.1265 32 1 -3.2243 -6.3856 4.4133 33 1 -4.2794 -6.2295 2.9883 34 1 -4.6590 -8.6795 2.9998 35 1 -3.6040 -8.8364 4.4250 36 1 -5.1229 -7.3596 5.7129 37 1 -6.1784 -7.2024 4.2883 38 1 -7.6986 -7.9630 6.4405 39 1 -8.1834 -9.5612 6.6235 40 1 1.5370 -5.7483 -0.1520 41 1 2.6840 -3.6823 -0.7725 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355915631.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:52 Heat of formation + Delta-G solvation = -141.909429 kcal Electronic energy + Delta-G solvation = -23773.361961 eV Core-core repulsion = 19970.870349 eV Total energy + Delta-G solvation = -3802.491612 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.77325 -38.95454 -38.03105 -37.22447 -36.94088 -35.66024 -34.85347 -33.98055 -32.18152 -31.30046 -30.19574 -27.68787 -25.16394 -23.41933 -22.82905 -22.42773 -21.15394 -20.32339 -19.36157 -18.65937 -18.20312 -18.16104 -17.29985 -17.28744 -16.79558 -16.57703 -16.22897 -15.74388 -15.63531 -15.49173 -15.04711 -14.47306 -14.39867 -13.98278 -13.74724 -13.62196 -13.53268 -13.21979 -13.17530 -13.12290 -13.02282 -12.83565 -12.78183 -12.61004 -12.35839 -12.31938 -11.78380 -11.71782 -11.56134 -11.36597 -11.22943 -11.11630 -10.70323 -10.05778 -9.56687 -9.38901 -8.78417 -6.47823 -0.69114 0.44584 1.15465 1.39550 1.43104 1.55063 2.01119 2.12687 2.18977 2.39909 2.75800 2.79511 3.46279 3.48195 3.69481 3.89552 4.06267 4.13211 4.24504 4.33147 4.37220 4.44928 4.64417 4.65761 4.69811 4.90754 4.93273 5.03904 5.16216 5.16365 5.22610 5.30905 5.32304 5.57623 5.61383 5.82904 5.95043 5.99877 6.23661 6.40824 6.54548 6.73295 6.77860 6.89628 7.45700 8.16904 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.024595 B = 0.001819 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.186249 B =15389.584762 C =16269.304949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.038 3.962 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.258 1.258 7 C -0.474 4.474 8 H 0.084 0.916 9 C 0.100 3.900 10 C -0.196 4.196 11 C -0.052 4.052 12 C -0.293 4.293 13 C 0.568 3.432 14 O -0.609 6.609 15 N -0.724 5.724 16 C 0.111 3.889 17 C -0.112 4.112 18 C -0.123 4.123 19 C -0.596 4.596 20 S 2.621 3.379 21 N -1.240 6.240 22 O -1.012 7.012 23 O -1.011 7.011 24 C -0.036 4.036 25 C -0.253 4.253 26 H 0.297 0.703 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.410 0.590 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.169 0.831 37 H 0.168 0.832 38 H 0.428 0.572 39 H 0.423 0.577 40 H 0.100 0.900 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.857 -4.610 13.458 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.182 1.182 7 C -0.501 4.501 8 H 0.102 0.898 9 C 0.097 3.903 10 C -0.216 4.216 11 C -0.071 4.071 12 C -0.298 4.298 13 C 0.362 3.638 14 O -0.494 6.494 15 N -0.376 5.376 16 C -0.012 4.012 17 C -0.151 4.151 18 C -0.163 4.163 19 C -0.729 4.729 20 S 2.717 3.283 21 N -0.918 5.918 22 O -1.001 7.001 23 O -1.000 7.000 24 C -0.055 4.055 25 C -0.272 4.272 26 H 0.108 0.892 27 H 0.133 0.867 28 H 0.146 0.854 29 H 0.248 0.752 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.187 0.813 37 H 0.186 0.814 38 H 0.258 0.742 39 H 0.254 0.746 40 H 0.119 0.881 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.515 -6.233 12.828 21.074 hybrid contribution 0.120 1.506 0.008 1.511 sum -15.395 -4.727 12.836 20.594 Atomic orbital electron populations 1.69750 1.09140 1.31611 1.31685 1.26906 0.95593 1.04747 0.90865 0.85119 0.79188 0.75327 0.79677 1.18697 1.18472 1.18201 1.20095 0.98407 0.92128 1.39494 0.89805 1.18162 0.91433 0.92811 0.87927 1.21018 1.00374 0.97483 1.02696 1.20745 0.97860 0.91285 0.97223 1.19204 1.04225 0.92398 1.13967 1.18442 0.79766 0.88411 0.77202 1.90619 1.68029 1.32995 1.57748 1.45728 1.30033 1.10934 1.50938 1.21453 0.94513 0.86393 0.98858 1.21685 0.95562 0.97728 1.00136 1.21322 0.95852 0.99358 0.99762 1.30191 1.10477 1.20220 1.11985 1.04158 0.74194 0.76640 0.73344 1.52775 1.49499 1.19383 1.70096 1.93572 1.74685 1.77228 1.54607 1.93573 1.70539 1.68732 1.67204 1.20525 0.93669 0.96939 0.94364 1.20855 1.05127 0.92892 1.08374 0.89157 0.86666 0.85362 0.75235 0.92688 0.92531 0.88861 0.89019 0.89920 0.89834 0.81337 0.81415 0.74211 0.74632 0.88145 0.87955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.24 10.95 21.87 0.24 -37.00 16 2 C 0.04 1.72 5.15 85.35 0.44 2.16 16 3 Si 0.99 34.08 29.59 68.60 2.03 36.11 16 4 H -0.26 -8.83 7.11 99.48 0.71 -8.13 16 5 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 6 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 7 C -0.47 -23.66 9.05 23.46 0.21 -23.44 16 8 H 0.08 4.03 7.90 -2.91 -0.02 4.01 16 9 C 0.10 5.13 5.57 -21.28 -0.12 5.01 16 10 C -0.20 -9.43 8.63 22.47 0.19 -9.23 16 11 C -0.05 -2.19 9.47 22.25 0.21 -1.98 16 12 C -0.29 -13.14 5.89 -19.93 -0.12 -13.26 16 13 C 0.57 23.43 7.76 86.73 0.67 24.10 16 14 O -0.61 -29.09 16.32 -3.97 -0.06 -29.16 16 15 N -0.72 -21.46 5.50 -466.16 -2.57 -24.03 16 16 C 0.11 2.65 5.67 86.38 0.49 3.14 16 17 C -0.11 -1.47 5.33 30.60 0.16 -1.30 16 18 C -0.12 -1.42 5.22 30.60 0.16 -1.26 16 19 C -0.60 -2.86 6.09 71.98 0.44 -2.42 16 20 S 2.62 31.20 5.97 -56.49 -0.34 30.87 16 21 N -1.24 -5.63 9.43 37.02 0.35 -5.29 16 22 O -1.01 -21.54 18.10 -127.65 -2.31 -23.85 16 23 O -1.01 -21.40 18.10 -127.65 -2.31 -23.71 16 24 C -0.04 -1.71 9.52 22.25 0.21 -1.50 16 25 C -0.25 -12.52 9.73 22.47 0.22 -12.30 16 26 H 0.30 12.24 8.29 -92.70 -0.77 11.47 16 27 H 0.12 5.57 6.18 -2.91 -0.02 5.55 16 28 H 0.13 4.20 6.37 -2.91 -0.02 4.18 16 29 H 0.41 9.90 6.47 -92.71 -0.60 9.30 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.17 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.17 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.43 -1.08 8.83 -96.74 -0.85 -1.94 16 39 H 0.42 1.72 8.96 -96.74 -0.87 0.86 16 40 H 0.10 4.72 7.63 -2.91 -0.02 4.70 16 41 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -80.01 362.23 -3.03 -83.03 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: -1.23 Total: 25.32 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 3.18 Total: -32.30 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: -1.98 Total: -66.31 kcal Atomic # 8 Polarization: -72.03 SS G_CDS: -4.69 Total: -76.72 kcal Atomic # 14 Polarization: 34.08 SS G_CDS: 2.03 Total: 36.11 kcal Atomic # 16 Polarization: 31.20 SS G_CDS: -0.34 Total: 30.87 kcal Total: -80.01 -3.03 -83.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355915631.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.877 kcal (2) G-P(sol) polarization free energy of solvation -80.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds