Wall clock time and date at job start Fri Apr 10 2020 18:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99839 * 2 1 4 4 H 1.48497 * 109.46895 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.46957 * 119.99852 * 3 2 1 6 6 H 1.48501 * 109.46761 * 239.99843 * 3 2 1 7 7 C 1.37869 * 120.00032 * 180.27157 * 2 1 3 8 8 H 1.08008 * 120.00309 * 173.28029 * 7 2 1 9 9 C 1.50700 * 120.00160 * 353.27812 * 7 2 1 10 10 H 1.08994 * 109.47405 * 326.91016 * 9 7 2 11 11 C 1.53005 * 109.47299 * 206.90965 * 9 7 2 12 12 C 1.50698 * 109.46990 * 65.97885 * 11 9 7 13 13 O 1.21283 * 120.00269 * 359.97438 * 12 11 9 14 14 N 1.34777 * 119.99686 * 180.02562 * 12 11 9 15 15 C 1.46502 * 119.99559 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46864 * 179.97438 * 15 14 12 17 17 S 1.81402 * 109.47054 * 179.97438 * 16 15 14 18 18 N 1.65598 * 104.44971 * 180.02562 * 17 16 15 19 19 O 1.42107 * 110.53962 * 291.62507 * 17 16 15 20 20 O 1.42092 * 110.54144 * 68.37366 * 17 16 15 21 21 C 1.50705 * 109.46907 * 86.91070 * 9 7 2 22 22 C 1.38237 * 120.00118 * 54.45011 * 21 9 7 23 23 C 1.38237 * 119.99818 * 179.78603 * 22 21 9 24 24 C 1.38236 * 120.00003 * 0.44191 * 23 22 21 25 25 C 1.38236 * 119.99991 * 359.81061 * 24 23 22 26 26 C 1.38228 * 119.99825 * 234.71903 * 21 9 7 27 27 H 0.97008 * 120.00303 * 174.41969 * 1 2 3 28 28 H 1.09000 * 109.47313 * 185.98052 * 11 9 7 29 29 H 1.09003 * 109.46698 * 305.97603 * 11 9 7 30 30 H 0.97002 * 120.00379 * 359.97438 * 14 12 11 31 31 H 1.08998 * 109.46870 * 299.99113 * 15 14 12 32 32 H 1.08995 * 109.47556 * 59.99876 * 15 14 12 33 33 H 1.08998 * 109.47146 * 299.99548 * 16 15 14 34 34 H 1.09005 * 109.47138 * 59.99890 * 16 15 14 35 35 H 0.97000 * 120.00172 * 150.00274 * 18 17 16 36 36 H 0.97003 * 119.99621 * 329.99757 * 18 17 16 37 37 H 1.08005 * 119.99967 * 359.97438 * 22 21 9 38 38 H 1.07999 * 119.99448 * 180.27078 * 23 22 21 39 39 H 1.07997 * 119.99991 * 179.83259 * 24 23 22 40 40 H 1.07993 * 119.99965 * 180.02562 * 25 24 23 41 41 H 1.07999 * 120.00249 * 359.97438 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0044 -1.1940 -0.0057 8 1 3.0789 -1.1967 -0.1151 9 6 1.2587 -2.4953 0.1409 10 1 0.3928 -2.3472 0.7860 11 6 2.1827 -3.5456 0.7608 12 6 2.5235 -3.1443 2.1728 13 8 2.0722 -2.1189 2.6375 14 7 3.3306 -3.9243 2.9188 15 6 3.6614 -3.5344 4.2917 16 6 4.5855 -4.5846 4.9115 17 16 4.9958 -4.1015 6.6112 18 7 5.9888 -5.3095 7.1559 19 8 5.8190 -2.9432 6.6154 20 8 3.8483 -4.1877 7.4448 21 6 0.8003 -2.9670 -1.2150 22 6 1.7146 -3.1134 -2.2414 23 6 1.2947 -3.5503 -3.4839 24 6 -0.0409 -3.8321 -3.7025 25 6 -0.9560 -3.6808 -2.6775 26 6 -0.5353 -3.2480 -1.4338 27 1 -0.4851 -0.8361 -0.0817 28 1 1.6797 -4.5125 0.7692 29 1 3.0976 -3.6172 0.1724 30 1 3.6919 -4.7442 2.5471 31 1 4.1640 -2.5672 4.2836 32 1 2.7465 -3.4636 4.8799 33 1 4.0826 -5.5516 4.9197 34 1 5.5006 -4.6558 4.3235 35 1 6.6716 -5.1151 7.8169 36 1 5.8876 -6.2117 6.8140 37 1 2.7574 -2.8893 -2.0718 38 1 2.0097 -3.6688 -4.2846 39 1 -0.3693 -4.1709 -4.6739 40 1 -1.9993 -3.9013 -2.8481 41 1 -1.2503 -3.1299 -0.6330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359273568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:01 Heat of formation + Delta-G solvation = -93.497325 kcal Electronic energy + Delta-G solvation = -25017.350967 eV Core-core repulsion = 21216.958661 eV Total energy + Delta-G solvation = -3800.392306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.31902 -38.36278 -37.32091 -36.23166 -35.37477 -34.18409 -33.59246 -31.58410 -30.89998 -30.13813 -28.82729 -25.34566 -23.69053 -22.67932 -21.69212 -20.48741 -19.85053 -19.52947 -17.91739 -17.75487 -16.97355 -16.62397 -16.27235 -15.96339 -15.88122 -15.27122 -15.13077 -14.54976 -14.15289 -13.90310 -13.64324 -13.20393 -12.88451 -12.60610 -12.52402 -12.47904 -12.38042 -12.35301 -12.25563 -11.96116 -11.89340 -11.49437 -11.35843 -10.95009 -10.81670 -10.71511 -10.46157 -10.15673 -10.03585 -9.71508 -9.15489 -8.84049 -8.64119 -8.29504 -8.16755 -7.66697 -6.23408 -3.93093 -0.15320 2.16136 2.21488 2.50323 3.23828 3.34678 3.50612 3.57020 3.61647 3.72261 3.90296 4.07701 4.54730 4.58925 4.66860 4.92105 5.30848 5.40886 5.48637 5.55824 5.57241 5.60577 5.72320 5.73617 5.93888 6.01836 6.12962 6.28688 6.38321 6.60368 6.61869 6.64831 6.75661 6.89711 7.17590 7.19848 7.34755 7.69754 7.82485 7.85716 8.20027 8.49782 8.86823 8.96131 9.76044 11.16034 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.014479 B = 0.003001 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.412077 B = 9327.856693 C =10576.692327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.033 3.967 3 Si 1.059 2.941 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.570 4.570 8 H 0.045 0.955 9 C 0.072 3.928 10 H 0.050 0.950 11 C -0.115 4.115 12 C 0.511 3.489 13 O -0.492 6.492 14 N -0.744 5.744 15 C 0.133 3.867 16 C -0.642 4.642 17 S 2.626 3.374 18 N -1.251 6.251 19 O -0.955 6.955 20 O -0.954 6.954 21 C -0.033 4.033 22 C -0.107 4.107 23 C -0.130 4.130 24 C -0.152 4.152 25 C -0.124 4.124 26 C -0.130 4.130 27 H 0.271 0.729 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.396 0.604 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.421 0.579 36 H 0.412 0.588 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.500 -16.471 6.312 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.173 4.173 3 Si 0.888 3.112 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.608 4.608 8 H 0.064 0.936 9 C 0.053 3.947 10 H 0.068 0.932 11 C -0.155 4.155 12 C 0.298 3.702 13 O -0.363 6.363 14 N -0.402 5.402 15 C 0.007 3.993 16 C -0.771 4.771 17 S 2.715 3.285 18 N -0.924 5.924 19 O -0.945 6.945 20 O -0.943 6.943 21 C -0.034 4.034 22 C -0.125 4.125 23 C -0.148 4.148 24 C -0.170 4.170 25 C -0.143 4.143 26 C -0.148 4.148 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.230 0.770 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.250 0.750 36 H 0.238 0.762 37 H 0.133 0.867 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.535 -13.078 7.170 17.701 hybrid contribution 0.816 -2.882 -0.835 3.109 sum 10.351 -15.959 6.335 20.049 Atomic orbital electron populations 1.70738 1.06955 1.31022 1.45262 1.25580 0.96380 1.02237 0.93086 0.83695 0.75164 0.76016 0.76293 1.20891 1.21411 1.21719 1.21530 0.93756 0.90666 1.54803 0.93629 1.17878 0.95646 0.92939 0.88270 0.93154 1.21669 1.01932 1.00098 0.91813 1.20982 0.77706 0.83413 0.88113 1.90779 1.50310 1.23014 1.72184 1.46100 1.53481 1.27553 1.13069 1.20763 0.97628 0.95524 0.85345 1.30794 1.10662 1.10535 1.25064 1.04481 0.74228 0.73455 0.76336 1.53244 1.54843 1.25292 1.59007 1.93638 1.67321 1.47029 1.86490 1.93646 1.52072 1.85692 1.62919 1.20844 0.92524 0.91216 0.98811 1.20926 0.99921 0.99144 0.92479 1.21018 0.95600 1.01166 0.97053 1.20831 0.93754 1.04086 0.98357 1.20970 0.98531 1.00983 0.93781 1.21080 0.96153 1.00737 0.96863 0.91778 0.91468 0.90086 0.77026 0.90027 0.90225 0.84291 0.83970 0.74952 0.76164 0.86681 0.87443 0.87569 0.87428 0.87126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.56 55.43 0.75 -26.87 16 2 C 0.03 0.95 5.45 -17.83 -0.10 0.85 16 3 Si 1.06 26.32 29.91 -169.99 -5.08 21.24 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.57 -15.39 6.35 -34.44 -0.22 -15.60 16 8 H 0.05 1.23 7.82 -52.48 -0.41 0.82 16 9 C 0.07 1.69 1.23 -92.92 -0.11 1.58 16 10 H 0.05 1.35 6.59 -51.93 -0.34 1.00 16 11 C -0.11 -2.13 4.95 -27.88 -0.14 -2.27 16 12 C 0.51 9.83 7.58 -10.99 -0.08 9.75 16 13 O -0.49 -12.16 15.02 5.55 0.08 -12.07 16 14 N -0.74 -10.03 5.56 -60.29 -0.33 -10.37 16 15 C 0.13 1.64 5.68 -4.04 -0.02 1.61 16 16 C -0.64 -4.14 6.29 37.16 0.23 -3.91 16 17 S 2.63 21.49 5.97 -107.50 -0.64 20.85 16 18 N -1.25 -5.07 9.36 60.35 0.57 -4.50 16 19 O -0.96 -11.89 18.10 -57.54 -1.04 -12.93 16 20 O -0.95 -11.83 18.10 -57.54 -1.04 -12.87 16 21 C -0.03 -0.72 4.53 -104.62 -0.47 -1.20 16 22 C -0.11 -2.14 8.90 -39.58 -0.35 -2.49 16 23 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 24 C -0.15 -2.60 10.05 -39.58 -0.40 -2.99 16 25 C -0.12 -2.25 10.05 -39.58 -0.40 -2.65 16 26 C -0.13 -2.68 9.18 -39.58 -0.36 -3.04 16 27 H 0.27 8.12 6.24 -40.82 -0.25 7.86 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.38 7.97 -51.93 -0.41 0.97 16 30 H 0.40 3.75 8.47 -40.82 -0.35 3.40 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.14 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.14 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.42 1.41 8.96 -34.47 -0.31 1.10 16 36 H 0.41 0.44 8.96 -34.47 -0.31 0.13 16 37 H 0.12 2.25 7.85 -52.48 -0.41 1.83 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.11 2.25 7.95 -52.49 -0.42 1.83 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -40.78 362.88 -9.49 -50.27 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.39 Total: 4.86 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -2.82 Total: -23.06 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.98 Total: -41.74 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -2.00 Total: -37.88 kcal Atomic # 14 Polarization: 26.32 SS G_CDS: -5.08 Total: 21.24 kcal Atomic # 16 Polarization: 21.49 SS G_CDS: -0.64 Total: 20.85 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -40.78 -9.49 -50.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359273568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.229 kcal (2) G-P(sol) polarization free energy of solvation -40.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds