Wall clock time and date at job start Fri Apr 10 2020 18:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99839 * 2 1 4 4 H 1.48497 * 109.46895 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.46957 * 119.99852 * 3 2 1 6 6 H 1.48501 * 109.46761 * 239.99843 * 3 2 1 7 7 C 1.37869 * 120.00032 * 180.27157 * 2 1 3 8 8 H 1.08008 * 120.00309 * 173.28029 * 7 2 1 9 9 C 1.50700 * 120.00160 * 353.27812 * 7 2 1 10 10 H 1.08994 * 109.47405 * 326.91016 * 9 7 2 11 11 C 1.53005 * 109.47299 * 206.90965 * 9 7 2 12 12 C 1.50698 * 109.46990 * 65.97885 * 11 9 7 13 13 O 1.21283 * 120.00269 * 359.97438 * 12 11 9 14 14 N 1.34777 * 119.99686 * 180.02562 * 12 11 9 15 15 C 1.46502 * 119.99559 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46864 * 179.97438 * 15 14 12 17 17 S 1.81402 * 109.47054 * 179.97438 * 16 15 14 18 18 N 1.65598 * 104.44971 * 180.02562 * 17 16 15 19 19 O 1.42107 * 110.53962 * 291.62507 * 17 16 15 20 20 O 1.42092 * 110.54144 * 68.37366 * 17 16 15 21 21 C 1.50705 * 109.46907 * 86.91070 * 9 7 2 22 22 C 1.38237 * 120.00118 * 54.45011 * 21 9 7 23 23 C 1.38237 * 119.99818 * 179.78603 * 22 21 9 24 24 C 1.38236 * 120.00003 * 0.44191 * 23 22 21 25 25 C 1.38236 * 119.99991 * 359.81061 * 24 23 22 26 26 C 1.38228 * 119.99825 * 234.71903 * 21 9 7 27 27 H 0.97008 * 120.00303 * 174.41969 * 1 2 3 28 28 H 1.09000 * 109.47313 * 185.98052 * 11 9 7 29 29 H 1.09003 * 109.46698 * 305.97603 * 11 9 7 30 30 H 0.97002 * 120.00379 * 359.97438 * 14 12 11 31 31 H 1.08998 * 109.46870 * 299.99113 * 15 14 12 32 32 H 1.08995 * 109.47556 * 59.99876 * 15 14 12 33 33 H 1.08998 * 109.47146 * 299.99548 * 16 15 14 34 34 H 1.09005 * 109.47138 * 59.99890 * 16 15 14 35 35 H 0.97000 * 120.00172 * 150.00274 * 18 17 16 36 36 H 0.97003 * 119.99621 * 329.99757 * 18 17 16 37 37 H 1.08005 * 119.99967 * 359.97438 * 22 21 9 38 38 H 1.07999 * 119.99448 * 180.27078 * 23 22 21 39 39 H 1.07997 * 119.99991 * 179.83259 * 24 23 22 40 40 H 1.07993 * 119.99965 * 180.02562 * 25 24 23 41 41 H 1.07999 * 120.00249 * 359.97438 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0044 -1.1940 -0.0057 8 1 3.0789 -1.1967 -0.1151 9 6 1.2587 -2.4953 0.1409 10 1 0.3928 -2.3472 0.7860 11 6 2.1827 -3.5456 0.7608 12 6 2.5235 -3.1443 2.1728 13 8 2.0722 -2.1189 2.6375 14 7 3.3306 -3.9243 2.9188 15 6 3.6614 -3.5344 4.2917 16 6 4.5855 -4.5846 4.9115 17 16 4.9958 -4.1015 6.6112 18 7 5.9888 -5.3095 7.1559 19 8 5.8190 -2.9432 6.6154 20 8 3.8483 -4.1877 7.4448 21 6 0.8003 -2.9670 -1.2150 22 6 1.7146 -3.1134 -2.2414 23 6 1.2947 -3.5503 -3.4839 24 6 -0.0409 -3.8321 -3.7025 25 6 -0.9560 -3.6808 -2.6775 26 6 -0.5353 -3.2480 -1.4338 27 1 -0.4851 -0.8361 -0.0817 28 1 1.6797 -4.5125 0.7692 29 1 3.0976 -3.6172 0.1724 30 1 3.6919 -4.7442 2.5471 31 1 4.1640 -2.5672 4.2836 32 1 2.7465 -3.4636 4.8799 33 1 4.0826 -5.5516 4.9197 34 1 5.5006 -4.6558 4.3235 35 1 6.6716 -5.1151 7.8169 36 1 5.8876 -6.2117 6.8140 37 1 2.7574 -2.8893 -2.0718 38 1 2.0097 -3.6688 -4.2846 39 1 -0.3693 -4.1709 -4.6739 40 1 -1.9993 -3.9013 -2.8481 41 1 -1.2503 -3.1299 -0.6330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359273568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:01 Heat of formation + Delta-G solvation = -128.030886 kcal Electronic energy + Delta-G solvation = -25018.848454 eV Core-core repulsion = 21216.958661 eV Total energy + Delta-G solvation = -3801.889794 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.83989 -39.84275 -38.15018 -37.06133 -36.67493 -35.91516 -34.03802 -33.37522 -32.13958 -31.60041 -30.24205 -27.10278 -25.15560 -24.05522 -23.17948 -21.92778 -21.25986 -20.39588 -18.89840 -18.59327 -18.36061 -17.91397 -17.30630 -17.16664 -17.01529 -16.45683 -16.20198 -15.87175 -15.65348 -15.62070 -15.20982 -14.68690 -14.48424 -14.06043 -13.95247 -13.48167 -13.45880 -13.27565 -13.20476 -13.19589 -13.12013 -12.94536 -12.63555 -12.58914 -12.13523 -12.07470 -11.95579 -11.71610 -11.50286 -11.27103 -10.79840 -10.58738 -10.37320 -10.12041 -9.63680 -9.26849 -8.44191 -6.11528 -0.83248 0.68233 0.74028 1.47779 1.58203 1.73564 1.82873 1.90978 2.26374 2.62024 2.74620 3.11058 3.31382 3.34349 3.36666 3.84475 4.07190 4.13785 4.24586 4.28883 4.29954 4.43798 4.47163 4.51538 4.62583 4.70669 4.83828 4.87655 5.09762 5.23871 5.28790 5.40260 5.41651 5.45056 5.75304 5.82655 5.94824 6.24131 6.31453 6.40221 6.41123 6.66267 6.78580 7.46072 7.63911 8.96199 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.014479 B = 0.003001 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.412077 B = 9327.856693 C =10576.692327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.025 4.025 3 Si 1.094 2.906 4 H -0.290 1.290 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.558 4.558 8 H 0.041 0.959 9 C 0.072 3.928 10 H 0.004 0.996 11 C -0.110 4.110 12 C 0.507 3.493 13 O -0.561 6.561 14 N -0.717 5.717 15 C 0.117 3.883 16 C -0.618 4.618 17 S 2.642 3.358 18 N -1.231 6.231 19 O -1.003 7.003 20 O -1.003 7.003 21 C -0.056 4.056 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.126 4.126 26 C -0.153 4.153 27 H 0.261 0.739 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.421 0.579 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.181 0.819 34 H 0.178 0.822 35 H 0.427 0.573 36 H 0.430 0.570 37 H 0.116 0.884 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.134 0.866 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.493 -19.568 4.207 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.223 4.223 3 Si 0.919 3.081 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.596 4.596 8 H 0.060 0.940 9 C 0.052 3.948 10 H 0.022 0.978 11 C -0.150 4.150 12 C 0.294 3.706 13 O -0.437 6.437 14 N -0.374 5.374 15 C -0.009 4.009 16 C -0.748 4.748 17 S 2.733 3.267 18 N -0.909 5.909 19 O -0.993 6.993 20 O -0.992 6.992 21 C -0.056 4.056 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.162 4.162 25 C -0.143 4.143 26 C -0.172 4.172 27 H 0.072 0.928 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.259 0.741 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.198 0.802 34 H 0.196 0.804 35 H 0.259 0.741 36 H 0.260 0.740 37 H 0.134 0.866 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.152 0.848 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.595 -16.263 5.080 20.610 hybrid contribution 0.223 -2.105 -0.213 2.128 sum 11.818 -18.369 4.866 22.378 Atomic orbital electron populations 1.70815 1.07948 1.30507 1.48999 1.26688 0.96581 1.05571 0.93475 0.83242 0.74492 0.73145 0.77225 1.21546 1.21380 1.18975 1.21821 0.93556 0.92162 1.52100 0.94045 1.17715 0.94525 0.93318 0.89202 0.97791 1.21576 1.02038 0.99843 0.91501 1.21160 0.77763 0.82966 0.88663 1.90760 1.53226 1.26155 1.73547 1.45733 1.51315 1.27311 1.13082 1.20875 0.98343 0.97004 0.84638 1.30588 1.11318 1.10263 1.22650 1.03593 0.73265 0.73144 0.76665 1.52726 1.54041 1.25289 1.58877 1.93579 1.68270 1.50022 1.87415 1.93598 1.54072 1.86408 1.65100 1.20613 0.93497 0.93461 0.98051 1.21017 0.99643 1.00063 0.93215 1.21413 0.96769 0.99334 0.96743 1.21310 0.93206 1.02181 0.99508 1.21297 1.00367 0.99867 0.92812 1.21134 0.95655 1.02309 0.98060 0.92850 0.88377 0.87976 0.74117 0.91965 0.91597 0.80171 0.80419 0.74118 0.74003 0.86642 0.83929 0.83611 0.84789 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.62 13.56 21.44 0.29 -60.33 16 2 C -0.02 -1.47 5.45 84.65 0.46 -1.01 16 3 Si 1.09 54.51 29.91 68.60 2.05 56.56 16 4 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.56 -31.02 6.35 25.60 0.16 -30.85 16 8 H 0.04 2.27 7.82 -2.91 -0.02 2.24 16 9 C 0.07 3.49 1.23 -12.28 -0.02 3.47 16 10 H 0.00 0.22 6.59 -2.39 -0.02 0.21 16 11 C -0.11 -4.03 4.95 29.85 0.15 -3.88 16 12 C 0.51 19.69 7.58 87.66 0.66 20.35 16 13 O -0.56 -29.17 15.02 -3.04 -0.05 -29.21 16 14 N -0.72 -18.19 5.56 -463.05 -2.57 -20.76 16 15 C 0.12 2.80 5.68 86.38 0.49 3.29 16 16 C -0.62 -6.09 6.29 71.98 0.45 -5.64 16 17 S 2.64 40.74 5.97 -56.49 -0.34 40.40 16 18 N -1.23 -7.01 9.36 37.02 0.35 -6.66 16 19 O -1.00 -25.14 18.10 -127.65 -2.31 -27.45 16 20 O -1.00 -25.00 18.10 -127.65 -2.31 -27.32 16 21 C -0.06 -2.44 4.53 -19.87 -0.09 -2.53 16 22 C -0.12 -4.67 8.90 22.27 0.20 -4.47 16 23 C -0.12 -3.96 10.05 22.27 0.22 -3.74 16 24 C -0.14 -4.35 10.05 22.27 0.22 -4.13 16 25 C -0.13 -4.28 10.05 22.27 0.22 -4.05 16 26 C -0.15 -6.39 9.18 22.27 0.20 -6.19 16 27 H 0.26 16.69 6.24 -92.70 -0.58 16.11 16 28 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 29 H 0.10 3.31 7.97 -2.39 -0.02 3.29 16 30 H 0.42 6.43 8.47 -92.71 -0.79 5.65 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.18 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.18 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.43 2.01 8.96 -96.75 -0.87 1.14 16 36 H 0.43 -0.61 8.96 -96.75 -0.87 -1.48 16 37 H 0.12 4.33 7.85 -2.91 -0.02 4.30 16 38 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 39 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 40 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 41 H 0.09 4.12 7.95 -2.91 -0.02 4.09 16 Total: -1.00 -96.43 362.88 -2.79 -99.22 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -1.25 Total: 14.93 kcal Atomic # 6 Polarization: -42.73 SS G_CDS: 3.35 Total: -39.38 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -1.94 Total: -87.76 kcal Atomic # 8 Polarization: -79.31 SS G_CDS: -4.67 Total: -83.98 kcal Atomic # 14 Polarization: 54.51 SS G_CDS: 2.05 Total: 56.56 kcal Atomic # 16 Polarization: 40.74 SS G_CDS: -0.34 Total: 40.40 kcal Total: -96.43 -2.79 -99.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359273568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.812 kcal (2) G-P(sol) polarization free energy of solvation -96.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds