Wall clock time and date at job start Fri Apr 10 2020 18:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53660 * 112.54143 * 2 1 4 4 C 1.55901 * 100.19085 * 268.43839 * 3 2 1 5 5 C 1.51129 * 104.54175 * 334.27221 * 4 3 2 6 6 O 1.21281 * 124.72547 * 190.84103 * 5 4 3 7 7 N 1.35824 * 110.54269 * 10.85702 * 5 4 3 8 8 C 1.46837 * 138.49068 * 194.78762 * 7 5 4 9 9 H 1.09000 * 108.54492 * 285.31382 * 8 7 5 10 10 C 1.50700 * 108.67621 * 43.26855 * 8 7 5 11 11 O 1.21279 * 120.00078 * 5.47808 * 10 8 7 12 12 N 1.34780 * 120.00151 * 185.48301 * 10 8 7 13 13 C 1.47072 * 136.05393 * 359.62560 * 12 10 8 14 14 C 1.53756 * 87.88675 * 152.96445 * 13 12 10 15 15 O 1.42899 * 114.39409 * 272.67525 * 14 13 12 16 16 C 1.50698 * 114.08834 * 139.77642 * 14 13 12 17 17 H 1.08001 * 120.00095 * 266.56807 * 16 14 13 18 18 C 1.37883 * 119.99919 * 86.55955 * 16 14 13 19 19 N 1.31509 * 120.00021 * 180.02562 * 18 16 14 20 20 Si 1.86796 * 119.99676 * 0.02562 * 18 16 14 21 21 H 1.48504 * 109.47129 * 90.00031 * 20 18 16 22 22 H 1.48497 * 109.47213 * 209.99438 * 20 18 16 23 23 H 1.48495 * 109.47430 * 329.99586 * 20 18 16 24 24 C 1.47060 * 136.06077 * 180.02562 * 12 10 8 25 25 C 1.54427 * 113.55848 * 164.33865 * 8 7 5 26 26 S 1.83549 * 112.62120 * 125.60834 * 2 1 3 27 27 H 1.09002 * 109.47153 * 295.40379 * 1 2 3 28 28 H 1.09001 * 109.46832 * 175.40570 * 1 2 3 29 29 H 1.09004 * 109.47261 * 55.40551 * 1 2 3 30 30 H 1.08999 * 111.18032 * 27.31152 * 3 2 1 31 31 H 1.09003 * 111.18368 * 151.62134 * 3 2 1 32 32 H 1.08994 * 110.69330 * 215.30515 * 4 3 2 33 33 H 1.09000 * 110.09542 * 92.93287 * 4 3 2 34 34 H 1.08996 * 113.46790 * 267.69658 * 13 12 10 35 35 H 1.08999 * 113.46582 * 38.13866 * 13 12 10 36 36 H 0.96694 * 114.00017 * 273.58669 * 15 14 13 37 37 H 0.96997 * 119.99729 * 180.02562 * 19 18 16 38 38 H 1.09000 * 113.46347 * 321.86156 * 24 12 10 39 39 H 1.09001 * 113.47286 * 92.29745 * 24 12 10 40 40 H 1.08995 * 110.99182 * 224.42298 * 25 8 7 41 41 H 1.09003 * 110.98441 * 100.61357 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1190 1.4192 0.0000 4 6 2.2634 1.6579 -1.5338 5 6 2.3935 0.2723 -2.1230 6 8 2.7110 0.0360 -3.2694 7 7 2.1048 -0.6714 -1.1897 8 6 2.2715 -2.1180 -1.0006 9 1 1.5500 -2.6357 -1.6326 10 6 3.6603 -2.5052 -1.4394 11 8 4.4534 -1.6485 -1.7679 12 7 4.0210 -3.8035 -1.4667 13 6 3.3781 -5.0880 -1.1507 14 6 4.3252 -5.7471 -2.1670 15 8 3.8432 -5.7423 -3.5122 16 6 4.8635 -7.0846 -1.7285 17 1 5.8128 -7.1431 -1.2167 18 6 4.1441 -8.2335 -1.9805 19 7 4.6137 -9.4007 -1.5974 20 14 2.5026 -8.1322 -2.8661 21 1 2.7223 -8.2455 -4.3304 22 1 1.6249 -9.2398 -2.4102 23 1 1.8555 -6.8307 -2.5619 24 6 5.2327 -4.5587 -1.8189 25 6 2.0685 -2.5770 0.4598 26 16 2.2360 -0.9865 1.3775 27 1 -0.3633 0.4409 0.9283 28 1 -0.3633 -1.0244 -0.0823 29 1 -0.3634 0.5835 -0.8460 30 1 1.4359 2.1291 0.4663 31 1 3.0959 1.4402 0.4831 32 1 3.1534 2.2490 -1.7495 33 1 1.3738 2.1547 -1.9209 34 1 3.5456 -5.4165 -0.1250 35 1 2.3286 -5.1313 -1.4418 36 1 3.2719 -6.4921 -3.7279 37 1 4.1077 -10.2089 -1.7750 38 1 5.7634 -4.1511 -2.6793 39 1 5.8888 -4.7478 -0.9692 40 1 2.8430 -3.2833 0.7584 41 1 1.0762 -3.0058 0.5998 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376899102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:26 Heat of formation + Delta-G solvation = -31.974532 kcal Electronic energy + Delta-G solvation = -26853.464524 eV Core-core repulsion = 23055.740046 eV Total energy + Delta-G solvation = -3797.724477 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.90343 -39.79851 -37.79908 -36.97148 -34.67658 -34.17173 -32.62229 -30.63151 -30.27287 -28.72242 -25.94810 -25.74861 -25.38727 -24.30098 -21.69016 -20.79901 -19.58223 -18.58721 -17.78624 -17.50637 -16.96565 -16.40158 -16.32466 -15.88246 -15.48702 -14.87860 -14.70583 -14.46726 -14.13039 -13.80375 -13.79126 -13.56815 -13.51191 -13.28003 -13.00163 -12.78881 -12.74212 -12.57989 -12.34326 -12.26426 -12.07015 -11.36184 -11.28463 -11.24236 -11.03031 -10.63841 -10.55670 -10.18388 -9.98747 -9.86514 -9.40815 -9.18118 -8.91515 -8.72041 -8.14879 -8.08580 -6.49449 -4.55982 1.31197 1.69869 2.25052 2.64206 2.84604 2.93658 2.95600 3.08924 3.23221 3.85206 3.95597 4.00818 4.28165 4.33537 4.43907 4.58310 4.59509 4.85048 4.94079 4.97746 5.07327 5.19900 5.21262 5.24042 5.31192 5.47407 5.50701 5.56393 5.68893 5.84119 5.96348 6.01952 6.10980 6.30512 6.33649 6.50623 6.96117 7.10887 7.93785 8.02738 8.18227 8.42875 8.47510 8.54710 9.07673 10.62619 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.003906 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.878934 B = 7165.901317 C = 7483.678006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.172 3.828 3 C -0.108 4.108 4 C -0.139 4.139 5 C 0.550 3.450 6 O -0.500 6.500 7 N -0.608 5.608 8 C 0.142 3.858 9 H 0.106 0.894 10 C 0.531 3.469 11 O -0.528 6.528 12 N -0.637 5.637 13 C 0.056 3.944 14 C 0.197 3.803 15 O -0.548 6.548 16 C -0.535 4.535 17 H 0.094 0.906 18 C 0.081 3.919 19 N -0.873 5.873 20 Si 0.859 3.141 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.259 1.259 24 C 0.125 3.875 25 C -0.066 4.066 26 S -0.256 6.256 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.351 0.649 37 H 0.272 0.728 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.126 0.874 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.434 17.046 6.964 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 C -0.147 4.147 4 C -0.180 4.180 5 C 0.338 3.662 6 O -0.371 6.371 7 N -0.347 5.347 8 C 0.034 3.966 9 H 0.123 0.877 10 C 0.317 3.683 11 O -0.405 6.405 12 N -0.372 5.372 13 C -0.067 4.067 14 C 0.156 3.844 15 O -0.360 6.360 16 C -0.572 4.572 17 H 0.112 0.888 18 C -0.124 4.124 19 N -0.509 5.509 20 Si 0.688 3.312 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.184 1.184 24 C 0.003 3.997 25 C -0.216 4.216 26 S -0.026 6.026 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.204 0.796 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.145 0.855 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.070 18.098 7.143 21.908 hybrid contribution -1.659 -1.202 -1.340 2.448 sum -11.729 16.897 5.802 21.371 Atomic orbital electron populations 1.22132 0.90548 1.03664 1.03527 1.24277 0.96612 0.95941 0.85628 1.22735 1.03099 0.92735 0.96136 1.22530 1.05783 0.94597 0.95119 1.20939 0.74838 0.86042 0.84349 1.90747 1.45159 1.83819 1.17379 1.49496 1.63111 1.04756 1.17339 1.21026 0.97386 0.81013 0.97142 0.87679 1.19802 0.88763 0.80948 0.78761 1.90696 1.52839 1.48278 1.48651 1.49627 1.18683 1.03684 1.65198 1.24608 0.99322 0.80281 1.02509 1.20265 0.90291 0.94261 0.79561 1.86503 1.69321 1.49924 1.30208 1.21137 1.08660 0.87831 1.39596 0.88846 1.24997 0.97483 0.95357 0.94598 1.69843 1.38384 0.98100 1.44536 0.87325 0.84523 0.78446 0.80914 1.19193 1.20919 1.18417 1.23171 0.88908 0.87822 0.99828 1.24631 1.07697 0.97743 0.91480 1.88327 1.83304 1.05330 1.25685 0.89830 0.91379 0.90897 0.88116 0.88586 0.86979 0.87429 0.88480 0.91725 0.79600 0.91769 0.90915 0.88614 0.85538 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.29 37.16 0.35 -0.66 16 2 C 0.17 1.76 0.87 -66.65 -0.06 1.70 16 3 C -0.11 -0.89 6.42 -24.84 -0.16 -1.04 16 4 C -0.14 -1.32 6.84 -26.12 -0.18 -1.50 16 5 C 0.55 8.58 7.24 -10.30 -0.07 8.50 16 6 O -0.50 -10.27 17.53 -1.64 -0.03 -10.30 16 7 N -0.61 -8.72 2.82 -152.36 -0.43 -9.15 16 8 C 0.14 2.14 3.46 -68.15 -0.24 1.91 16 9 H 0.11 1.53 8.14 -51.93 -0.42 1.10 16 10 C 0.53 10.44 7.24 -10.98 -0.08 10.36 16 11 O -0.53 -12.29 15.81 -1.64 -0.03 -12.32 16 12 N -0.64 -12.50 3.46 -185.03 -0.64 -13.14 16 13 C 0.06 1.05 6.20 -8.37 -0.05 0.99 16 14 C 0.20 4.40 1.11 -91.11 -0.10 4.30 16 15 O -0.55 -12.96 13.33 -35.23 -0.47 -13.43 16 16 C -0.53 -13.39 9.27 -34.44 -0.32 -13.71 16 17 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 18 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.87 -23.82 13.96 55.43 0.77 -23.05 16 20 Si 0.86 18.41 24.42 -169.99 -4.15 14.26 16 21 H -0.27 -5.64 7.06 56.52 0.40 -5.24 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.26 -5.15 5.50 56.52 0.31 -4.84 16 24 C 0.12 2.58 8.02 -8.50 -0.07 2.52 16 25 C -0.07 -0.79 6.70 37.91 0.25 -0.54 16 26 S -0.26 -3.00 22.31 -107.50 -2.40 -5.40 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.50 8.00 -51.93 -0.42 0.09 16 31 H 0.10 0.89 7.88 -51.93 -0.41 0.48 16 32 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.10 1.65 8.10 -51.93 -0.42 1.23 16 35 H 0.06 1.13 7.15 -51.93 -0.37 0.76 16 36 H 0.35 7.87 3.16 45.56 0.14 8.02 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 39 H 0.10 1.82 8.10 -51.93 -0.42 1.40 16 40 H 0.13 1.59 6.81 -51.93 -0.35 1.24 16 41 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -34.18 342.14 -8.32 -42.50 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.28 Total: 10.06 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: -0.82 Total: 14.81 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -0.30 Total: -45.33 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.52 Total: -36.05 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -4.15 Total: 14.26 kcal Atomic # 16 Polarization: -3.00 SS G_CDS: -2.40 Total: -5.40 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.18 -8.32 -42.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376899102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.521 kcal (2) G-P(sol) polarization free energy of solvation -34.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds