Wall clock time and date at job start Fri Apr 10 2020 18:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53660 * 112.54143 * 2 1 4 4 C 1.55901 * 100.19085 * 268.43839 * 3 2 1 5 5 C 1.51129 * 104.54175 * 334.27221 * 4 3 2 6 6 O 1.21281 * 124.72547 * 190.84103 * 5 4 3 7 7 N 1.35824 * 110.54269 * 10.85702 * 5 4 3 8 8 C 1.46837 * 138.49068 * 194.78762 * 7 5 4 9 9 H 1.09000 * 108.54492 * 285.31382 * 8 7 5 10 10 C 1.50700 * 108.67621 * 43.26855 * 8 7 5 11 11 O 1.21279 * 120.00078 * 5.47808 * 10 8 7 12 12 N 1.34780 * 120.00151 * 185.48301 * 10 8 7 13 13 C 1.47072 * 136.05393 * 359.62560 * 12 10 8 14 14 C 1.53756 * 87.88675 * 152.96445 * 13 12 10 15 15 O 1.42899 * 114.39409 * 272.67525 * 14 13 12 16 16 C 1.50698 * 114.08834 * 139.77642 * 14 13 12 17 17 H 1.08001 * 120.00095 * 266.56807 * 16 14 13 18 18 C 1.37883 * 119.99919 * 86.55955 * 16 14 13 19 19 N 1.31509 * 120.00021 * 180.02562 * 18 16 14 20 20 Si 1.86796 * 119.99676 * 0.02562 * 18 16 14 21 21 H 1.48504 * 109.47129 * 90.00031 * 20 18 16 22 22 H 1.48497 * 109.47213 * 209.99438 * 20 18 16 23 23 H 1.48495 * 109.47430 * 329.99586 * 20 18 16 24 24 C 1.47060 * 136.06077 * 180.02562 * 12 10 8 25 25 C 1.54427 * 113.55848 * 164.33865 * 8 7 5 26 26 S 1.83549 * 112.62120 * 125.60834 * 2 1 3 27 27 H 1.09002 * 109.47153 * 295.40379 * 1 2 3 28 28 H 1.09001 * 109.46832 * 175.40570 * 1 2 3 29 29 H 1.09004 * 109.47261 * 55.40551 * 1 2 3 30 30 H 1.08999 * 111.18032 * 27.31152 * 3 2 1 31 31 H 1.09003 * 111.18368 * 151.62134 * 3 2 1 32 32 H 1.08994 * 110.69330 * 215.30515 * 4 3 2 33 33 H 1.09000 * 110.09542 * 92.93287 * 4 3 2 34 34 H 1.08996 * 113.46790 * 267.69658 * 13 12 10 35 35 H 1.08999 * 113.46582 * 38.13866 * 13 12 10 36 36 H 0.96694 * 114.00017 * 273.58669 * 15 14 13 37 37 H 0.96997 * 119.99729 * 180.02562 * 19 18 16 38 38 H 1.09000 * 113.46347 * 321.86156 * 24 12 10 39 39 H 1.09001 * 113.47286 * 92.29745 * 24 12 10 40 40 H 1.08995 * 110.99182 * 224.42298 * 25 8 7 41 41 H 1.09003 * 110.98441 * 100.61357 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1190 1.4192 0.0000 4 6 2.2634 1.6579 -1.5338 5 6 2.3935 0.2723 -2.1230 6 8 2.7110 0.0360 -3.2694 7 7 2.1048 -0.6714 -1.1897 8 6 2.2715 -2.1180 -1.0006 9 1 1.5500 -2.6357 -1.6326 10 6 3.6603 -2.5052 -1.4394 11 8 4.4534 -1.6485 -1.7679 12 7 4.0210 -3.8035 -1.4667 13 6 3.3781 -5.0880 -1.1507 14 6 4.3252 -5.7471 -2.1670 15 8 3.8432 -5.7423 -3.5122 16 6 4.8635 -7.0846 -1.7285 17 1 5.8128 -7.1431 -1.2167 18 6 4.1441 -8.2335 -1.9805 19 7 4.6137 -9.4007 -1.5974 20 14 2.5026 -8.1322 -2.8661 21 1 2.7223 -8.2455 -4.3304 22 1 1.6249 -9.2398 -2.4102 23 1 1.8555 -6.8307 -2.5619 24 6 5.2327 -4.5587 -1.8189 25 6 2.0685 -2.5770 0.4598 26 16 2.2360 -0.9865 1.3775 27 1 -0.3633 0.4409 0.9283 28 1 -0.3633 -1.0244 -0.0823 29 1 -0.3634 0.5835 -0.8460 30 1 1.4359 2.1291 0.4663 31 1 3.0959 1.4402 0.4831 32 1 3.1534 2.2490 -1.7495 33 1 1.3738 2.1547 -1.9209 34 1 3.5456 -5.4165 -0.1250 35 1 2.3286 -5.1313 -1.4418 36 1 3.2719 -6.4921 -3.7279 37 1 4.1077 -10.2089 -1.7750 38 1 5.7634 -4.1511 -2.6793 39 1 5.8888 -4.7478 -0.9692 40 1 2.8430 -3.2833 0.7584 41 1 1.0762 -3.0058 0.5998 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376899102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:25 Heat of formation + Delta-G solvation = -58.677358 kcal Electronic energy + Delta-G solvation = -26854.622445 eV Core-core repulsion = 23055.740046 eV Total energy + Delta-G solvation = -3798.882399 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.10003 -41.25560 -39.39031 -38.15537 -36.45734 -35.24698 -34.58512 -31.53743 -31.29802 -30.16789 -27.63094 -27.03461 -26.49645 -25.49249 -22.63642 -22.26456 -20.93936 -20.00992 -19.33664 -18.83419 -18.45604 -18.08909 -17.38315 -17.11918 -16.77954 -16.10954 -15.87133 -15.70451 -15.60920 -15.23542 -15.05788 -14.86095 -14.61510 -14.45338 -14.35044 -14.10583 -13.93773 -13.73181 -13.54132 -13.34376 -12.97037 -12.91177 -12.70888 -12.45203 -12.09214 -12.05662 -11.94717 -11.60966 -11.45255 -11.14000 -11.04382 -10.97489 -10.57682 -10.02855 -9.78094 -8.96720 -8.45248 -6.57973 0.45786 0.83424 1.10536 1.23916 1.25323 1.37232 1.38947 1.60722 1.80302 2.14684 2.71042 2.88880 3.07947 3.19136 3.24916 3.45902 3.72045 3.73954 3.81679 3.85404 4.14480 4.24210 4.26118 4.34008 4.39560 4.46867 4.58389 4.61267 4.69338 4.71247 4.76247 4.85513 4.91177 4.96672 5.05245 5.21985 5.23594 5.90001 5.99690 6.50360 6.59956 6.65102 6.84019 6.97603 7.10183 8.70038 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.003906 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.878934 B = 7165.901317 C = 7483.678006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.175 3.825 3 C -0.100 4.100 4 C -0.128 4.128 5 C 0.533 3.467 6 O -0.566 6.566 7 N -0.619 5.619 8 C 0.144 3.856 9 H 0.114 0.886 10 C 0.522 3.478 11 O -0.573 6.573 12 N -0.636 5.636 13 C 0.075 3.925 14 C 0.184 3.816 15 O -0.561 6.561 16 C -0.541 4.541 17 H 0.060 0.940 18 C 0.033 3.967 19 N -0.920 5.920 20 Si 0.916 3.084 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.230 1.230 24 C 0.119 3.881 25 C -0.060 4.060 26 S -0.277 6.277 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.145 0.855 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.144 0.856 34 H 0.117 0.883 35 H 0.087 0.913 36 H 0.356 0.644 37 H 0.275 0.725 38 H 0.054 0.946 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.026 19.000 8.259 25.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.020 4.020 3 C -0.139 4.139 4 C -0.169 4.169 5 C 0.324 3.676 6 O -0.443 6.443 7 N -0.357 5.357 8 C 0.036 3.964 9 H 0.131 0.869 10 C 0.311 3.689 11 O -0.452 6.452 12 N -0.370 5.370 13 C -0.048 4.048 14 C 0.143 3.857 15 O -0.373 6.373 16 C -0.579 4.579 17 H 0.078 0.922 18 C -0.169 4.169 19 N -0.557 5.557 20 Si 0.741 3.259 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.153 1.153 24 C -0.003 4.003 25 C -0.208 4.208 26 S -0.048 6.048 27 H 0.127 0.873 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.163 0.837 31 H 0.100 0.900 32 H 0.134 0.866 33 H 0.162 0.838 34 H 0.135 0.865 35 H 0.105 0.895 36 H 0.209 0.791 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.126 0.874 40 H 0.137 0.863 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.688 20.067 8.498 25.735 hybrid contribution -0.381 -1.815 -1.744 2.546 sum -14.069 18.252 6.755 24.015 Atomic orbital electron populations 1.22182 0.87646 1.04196 1.05406 1.24750 0.98386 0.96041 0.82816 1.22860 1.03470 0.92467 0.95100 1.22619 1.07684 0.90928 0.95665 1.22166 0.73329 0.88377 0.83769 1.90698 1.48185 1.85153 1.20225 1.49710 1.62680 1.04636 1.18629 1.21133 0.93812 0.82200 0.99293 0.86887 1.20767 0.90404 0.80134 0.77633 1.90670 1.54695 1.49349 1.50526 1.49638 1.18075 1.04268 1.65066 1.24433 0.99490 0.78631 1.02215 1.20324 0.92319 0.93220 0.79850 1.86501 1.69631 1.50147 1.31067 1.21204 1.07700 0.89656 1.39312 0.92171 1.25764 1.01333 0.94644 0.95187 1.69975 1.40357 0.99032 1.46339 0.86366 0.80050 0.79905 0.79573 1.18909 1.20343 1.15348 1.23169 0.89609 0.87793 0.99766 1.24685 1.09509 0.97691 0.88950 1.88428 1.84168 1.05899 1.26289 0.87349 0.91565 0.89547 0.83666 0.90022 0.86580 0.83784 0.86473 0.89459 0.79090 0.91545 0.92746 0.87441 0.86347 0.83108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 9.29 71.98 0.67 -0.66 16 2 C 0.17 3.00 0.87 44.88 0.04 3.04 16 3 C -0.10 -1.27 6.42 31.82 0.20 -1.07 16 4 C -0.13 -2.09 6.84 30.99 0.21 -1.88 16 5 C 0.53 16.19 7.24 87.63 0.63 16.83 16 6 O -0.57 -23.86 17.53 3.85 0.07 -23.79 16 7 N -0.62 -16.71 2.82 -753.75 -2.13 -18.83 16 8 C 0.14 4.09 3.46 44.67 0.15 4.24 16 9 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 10 C 0.52 20.44 7.24 87.66 0.63 21.07 16 11 O -0.57 -27.37 15.81 3.86 0.06 -27.31 16 12 N -0.64 -24.64 3.46 -858.18 -2.97 -27.61 16 13 C 0.07 2.64 6.20 83.26 0.52 3.16 16 14 C 0.18 8.13 1.11 -11.11 -0.01 8.11 16 15 O -0.56 -26.09 13.33 -148.98 -1.99 -28.07 16 16 C -0.54 -27.56 9.27 25.60 0.24 -27.33 16 17 H 0.06 3.37 8.06 -2.91 -0.02 3.35 16 18 C 0.03 1.66 5.47 84.66 0.46 2.12 16 19 N -0.92 -51.15 13.96 21.45 0.30 -50.85 16 20 Si 0.92 36.90 24.42 68.60 1.68 38.57 16 21 H -0.26 -10.47 7.06 99.48 0.70 -9.77 16 22 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 23 H -0.23 -8.10 5.50 99.48 0.55 -7.55 16 24 C 0.12 5.05 8.02 83.19 0.67 5.72 16 25 C -0.06 -1.25 6.70 72.47 0.49 -0.76 16 26 S -0.28 -5.78 22.31 -56.49 -1.26 -7.04 16 27 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 29 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.15 0.60 8.00 -2.39 -0.02 0.58 16 31 H 0.08 1.32 7.88 -2.39 -0.02 1.30 16 32 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.12 3.70 8.10 -2.39 -0.02 3.68 16 35 H 0.09 2.72 7.15 -2.39 -0.02 2.70 16 36 H 0.36 15.31 3.16 -74.06 -0.23 15.08 16 37 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 38 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.11 4.22 8.10 -2.39 -0.02 4.20 16 40 H 0.12 2.70 6.81 -2.39 -0.02 2.69 16 41 H 0.15 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -79.70 342.14 -0.67 -80.37 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 0.66 Total: 31.98 kcal Atomic # 6 Polarization: 27.69 SS G_CDS: 4.90 Total: 32.59 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -4.80 Total: -97.30 kcal Atomic # 8 Polarization: -77.32 SS G_CDS: -1.86 Total: -79.17 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 1.68 Total: 38.57 kcal Atomic # 16 Polarization: -5.78 SS G_CDS: -1.26 Total: -7.04 kcal Total: -79.70 -0.67 -80.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376899102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.695 kcal (2) G-P(sol) polarization free energy of solvation -79.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds