Wall clock time and date at job start Fri Apr 10 2020 18:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.75698 * 124.69537 * 2 1 4 4 C 1.75842 * 91.38328 * 179.97438 * 3 2 1 5 5 N 1.34952 * 125.40764 * 179.97438 * 4 3 2 6 6 C 1.30845 * 119.99718 * 5.09168 * 5 4 3 7 7 C 1.46755 * 119.99849 * 185.03434 * 6 5 4 8 8 C 1.39978 * 120.23141 * 5.02842 * 7 6 5 9 9 C 1.37734 * 119.88739 * 180.02562 * 8 7 6 10 10 C 1.38633 * 120.36104 * 0.02562 * 9 8 7 11 11 C 1.38070 * 120.46353 * 359.67633 * 10 9 8 12 12 C 1.38760 * 120.10311 * 0.59898 * 11 10 9 13 13 O 1.35505 * 120.17855 * 179.69500 * 12 11 10 14 14 C 1.34779 * 117.00261 * 354.39919 * 13 12 11 15 15 H 1.07997 * 120.00096 * 5.06333 * 14 13 12 16 16 C 1.38674 * 120.00201 * 184.78335 * 14 13 12 17 17 N 1.31534 * 120.00210 * 175.25805 * 16 14 13 18 18 Si 1.86800 * 120.00179 * 355.25813 * 16 14 13 19 19 H 1.48510 * 109.47145 * 94.98126 * 18 16 14 20 20 H 1.48493 * 109.47594 * 214.98470 * 18 16 14 21 21 H 1.48502 * 109.47093 * 334.98315 * 18 16 14 22 22 C 1.38310 * 109.19036 * 0.26671 * 4 3 2 23 23 C 1.43204 * 123.19457 * 179.73691 * 22 4 3 24 24 N 4.75027 * 144.62282 * 180.32235 * 2 1 3 25 25 C 1.32868 * 124.70029 * 179.97438 * 2 1 3 26 26 C 1.50696 * 122.39612 * 0.03858 * 25 2 1 27 27 H 1.08993 * 109.47055 * 0.03017 * 1 2 3 28 28 H 1.09001 * 109.46617 * 120.02467 * 1 2 3 29 29 H 1.08989 * 109.47243 * 240.02369 * 1 2 3 30 30 H 1.08001 * 120.00071 * 5.03362 * 6 5 4 31 31 H 1.08006 * 120.05347 * 0.04235 * 8 7 6 32 32 H 1.08005 * 119.82267 * 180.02562 * 9 8 7 33 33 H 1.07997 * 119.76513 * 179.97438 * 10 9 8 34 34 H 1.07996 * 119.94888 * 180.32637 * 11 10 9 35 35 H 0.97008 * 119.99996 * 179.97438 * 17 16 14 36 36 H 1.09006 * 109.47393 * 89.99955 * 26 25 2 37 37 H 1.09003 * 109.47668 * 210.00000 * 26 25 2 38 38 H 1.09007 * 109.47223 * 330.00263 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5071 1.4446 0.0000 4 6 3.9766 0.4788 0.0008 5 7 5.2341 0.9686 0.0006 6 6 5.4340 2.2579 0.1004 7 6 6.7931 2.8004 -0.0106 8 6 7.8648 1.9575 -0.3274 9 6 9.1375 2.4741 -0.4293 10 6 9.3640 3.8255 -0.2192 11 6 8.3169 4.6714 0.0880 12 6 7.0278 4.1705 0.2011 13 8 5.9999 4.9981 0.5086 14 6 6.3108 6.2753 0.8066 15 1 7.3305 6.6186 0.7139 16 6 5.3202 7.1502 1.2265 17 7 5.6369 8.3690 1.6064 18 14 3.5359 6.5979 1.2527 19 1 3.1883 6.1111 2.6120 20 1 2.6583 7.7417 0.8971 21 1 3.3426 5.5015 0.2699 22 6 3.6392 -0.8624 -0.0051 23 6 4.6100 -1.9151 -0.0116 24 7 5.3802 -2.7502 -0.0155 25 6 2.2634 -1.0924 0.0005 26 6 1.6769 -2.4805 0.0003 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3632 -0.5142 -0.8898 29 1 -0.3633 -0.5134 0.8901 30 1 4.5989 2.9227 0.2645 31 1 7.6938 0.9038 -0.4920 32 1 9.9635 1.8228 -0.6743 33 1 10.3659 4.2203 -0.3012 34 1 8.5020 5.7237 0.2448 35 1 4.9439 8.9811 1.8998 36 1 1.5361 -2.8153 -1.0275 37 1 2.3550 -3.1616 0.5145 38 1 0.7154 -2.4688 0.5135 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408813366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:28 Heat of formation + Delta-G solvation = 70.012169 kcal Electronic energy + Delta-G solvation = -23377.746621 eV Core-core repulsion = 19891.753539 eV Total energy + Delta-G solvation = -3485.993083 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 326.083 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.66199 -39.07136 -37.20588 -36.26471 -35.92898 -32.81033 -32.16662 -30.52425 -29.54982 -29.28093 -25.94608 -25.56675 -24.75949 -22.69348 -21.41106 -20.42769 -19.34547 -18.23752 -17.72768 -17.64834 -16.76888 -15.68614 -15.27853 -14.99423 -14.69567 -14.36551 -14.16222 -13.92685 -13.61671 -13.53939 -13.46668 -13.14800 -13.08866 -12.89726 -12.76334 -12.68615 -12.50063 -12.31179 -12.13699 -11.78652 -11.76037 -11.14772 -11.07941 -11.02421 -10.98626 -10.79725 -10.45108 -9.78030 -9.37589 -9.19897 -8.84979 -8.52670 -7.97133 -7.36523 -6.77659 -4.39305 -0.08125 1.32164 1.51717 1.74632 1.94093 2.05300 2.92534 2.95752 3.00993 3.06197 3.16738 3.72354 3.94411 4.08488 4.20134 4.28651 4.36424 4.79381 4.82880 4.91200 5.06303 5.09474 5.30350 5.34598 5.40141 5.48249 5.50168 5.61489 5.65987 5.71648 5.77750 5.96142 6.02603 6.16798 6.27510 6.33920 6.47318 6.78730 6.89557 7.00504 7.28562 7.45088 7.65781 7.71135 7.87204 8.54127 9.10609 10.27491 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.004319 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.613897 B = 6481.852369 C = 8889.864585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.190 4.190 3 S 0.073 5.927 4 C 0.096 3.904 5 N -0.496 5.496 6 C 0.260 3.740 7 C -0.177 4.177 8 C -0.010 4.010 9 C -0.218 4.218 10 C -0.040 4.040 11 C -0.226 4.226 12 C 0.193 3.807 13 O -0.194 6.194 14 C -0.389 4.389 15 H 0.115 0.885 16 C 0.070 3.930 17 N -0.856 5.856 18 Si 0.897 3.103 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.254 1.254 22 C -0.070 4.070 23 C 0.296 3.704 24 N -0.435 5.435 25 C -0.060 4.060 26 C -0.096 4.096 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.129 0.871 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.141 0.859 35 H 0.286 0.714 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.498 -11.414 -3.159 14.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.308 4.308 3 S 0.339 5.661 4 C -0.133 4.133 5 N -0.210 5.210 6 C 0.069 3.931 7 C -0.181 4.181 8 C -0.030 4.030 9 C -0.237 4.237 10 C -0.060 4.060 11 C -0.245 4.245 12 C 0.135 3.865 13 O -0.094 6.094 14 C -0.464 4.464 15 H 0.132 0.868 16 C -0.137 4.137 17 N -0.490 5.490 18 Si 0.721 3.279 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.178 1.178 22 C -0.087 4.087 23 C -0.020 4.020 24 N -0.112 5.112 25 C -0.072 4.072 26 C -0.155 4.155 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.129 0.871 31 H 0.147 0.853 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.158 0.842 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.641 -11.690 -3.125 13.803 hybrid contribution -1.165 -0.276 0.193 1.213 sum -7.806 -11.966 -2.932 14.585 Atomic orbital electron populations 1.20292 0.87472 1.02923 1.02776 1.23716 0.99866 0.94094 1.13097 1.84923 0.98543 1.09881 1.72738 1.23887 0.91425 0.95672 1.02323 1.67947 1.15479 1.14645 1.22926 1.24429 0.96724 0.89285 0.82630 1.17635 0.91897 0.90521 1.18070 1.21076 0.91101 0.98775 0.92044 1.20720 0.96708 0.95583 1.10674 1.21101 0.98153 0.93256 0.93456 1.21228 0.91942 1.01620 1.09665 1.19165 0.87534 0.88309 0.91517 1.83431 1.31565 1.21845 1.72593 1.20910 0.98709 0.81659 1.45077 0.86808 1.24530 1.00305 0.94338 0.94498 1.69622 1.35565 1.05316 1.38484 0.86282 0.82113 0.79474 0.80038 1.19269 1.20036 1.17756 1.15028 0.89940 0.87178 1.16547 1.24671 0.92327 0.91981 0.93017 1.81161 1.08790 1.10944 1.10280 1.18221 0.90168 0.96590 1.02253 1.20555 1.00914 0.91344 1.02646 0.91378 0.90584 0.90555 0.87136 0.85275 0.86635 0.86483 0.84155 0.90340 0.90767 0.91634 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 9.38 36.01 0.34 -0.27 16 2 C -0.19 -2.20 6.45 -36.16 -0.23 -2.44 16 3 S 0.07 1.04 21.69 -107.50 -2.33 -1.30 16 4 C 0.10 1.55 7.08 -16.15 -0.11 1.43 16 5 N -0.50 -8.77 9.34 -9.76 -0.09 -8.87 16 6 C 0.26 4.70 9.96 -14.53 -0.14 4.55 16 7 C -0.18 -3.32 5.88 -104.91 -0.62 -3.94 16 8 C -0.01 -0.17 9.58 -39.11 -0.37 -0.54 16 9 C -0.22 -3.35 10.02 -39.62 -0.40 -3.75 16 10 C -0.04 -0.64 10.03 -39.50 -0.40 -1.03 16 11 C -0.23 -4.23 9.16 -39.45 -0.36 -4.59 16 12 C 0.19 3.93 6.67 -38.50 -0.26 3.68 16 13 O -0.19 -4.43 7.79 0.95 0.01 -4.43 16 14 C -0.39 -9.62 9.94 30.89 0.31 -9.31 16 15 H 0.11 2.86 5.44 -52.49 -0.29 2.57 16 16 C 0.07 1.76 5.49 -17.52 -0.10 1.66 16 17 N -0.86 -22.22 13.96 55.48 0.77 -21.44 16 18 Si 0.90 19.15 28.62 -169.99 -4.87 14.29 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.25 -5.31 7.11 56.52 0.40 -4.91 16 22 C -0.07 -1.05 5.75 -107.48 -0.62 -1.67 16 23 C 0.30 4.80 14.36 -22.47 -0.32 4.47 16 24 N -0.44 -7.58 18.54 41.84 0.78 -6.80 16 25 C -0.06 -0.73 5.81 -106.01 -0.62 -1.35 16 26 C -0.10 -0.87 9.53 36.00 0.34 -0.53 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.51 7.88 -51.93 -0.41 0.10 16 30 H 0.11 2.01 6.41 -52.49 -0.34 1.68 16 31 H 0.13 2.10 7.56 -52.48 -0.40 1.71 16 32 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 33 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.14 2.70 5.64 -52.49 -0.30 2.40 16 35 H 0.29 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.64 7.48 -51.93 -0.39 0.25 16 38 H 0.07 0.52 7.25 -51.93 -0.38 0.14 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -26.75 352.84 -7.71 -34.46 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -3.74 Total: 2.40 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -3.56 Total: -13.63 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 1.46 Total: -37.11 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: 0.01 Total: -4.43 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.87 Total: 14.29 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.33 Total: -1.30 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -26.75 -7.71 -34.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408813366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.470 kcal (2) G-P(sol) polarization free energy of solvation -26.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds