Wall clock time and date at job start Fri Apr 10 2020 18:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.75698 * 124.69537 * 2 1 4 4 C 1.75842 * 91.38328 * 179.97438 * 3 2 1 5 5 N 1.34952 * 125.40764 * 179.97438 * 4 3 2 6 6 C 1.30845 * 119.99718 * 5.09168 * 5 4 3 7 7 C 1.46755 * 119.99849 * 185.03434 * 6 5 4 8 8 C 1.39978 * 120.23141 * 5.02842 * 7 6 5 9 9 C 1.37734 * 119.88739 * 180.02562 * 8 7 6 10 10 C 1.38633 * 120.36104 * 0.02562 * 9 8 7 11 11 C 1.38070 * 120.46353 * 359.67633 * 10 9 8 12 12 C 1.38760 * 120.10311 * 0.59898 * 11 10 9 13 13 O 1.35505 * 120.17855 * 179.69500 * 12 11 10 14 14 C 1.34779 * 117.00261 * 354.39919 * 13 12 11 15 15 H 1.07997 * 120.00096 * 5.06333 * 14 13 12 16 16 C 1.38674 * 120.00201 * 184.78335 * 14 13 12 17 17 N 1.31534 * 120.00210 * 175.25805 * 16 14 13 18 18 Si 1.86800 * 120.00179 * 355.25813 * 16 14 13 19 19 H 1.48510 * 109.47145 * 94.98126 * 18 16 14 20 20 H 1.48493 * 109.47594 * 214.98470 * 18 16 14 21 21 H 1.48502 * 109.47093 * 334.98315 * 18 16 14 22 22 C 1.38310 * 109.19036 * 0.26671 * 4 3 2 23 23 C 1.43204 * 123.19457 * 179.73691 * 22 4 3 24 24 N 4.75027 * 144.62282 * 180.32235 * 2 1 3 25 25 C 1.32868 * 124.70029 * 179.97438 * 2 1 3 26 26 C 1.50696 * 122.39612 * 0.03858 * 25 2 1 27 27 H 1.08993 * 109.47055 * 0.03017 * 1 2 3 28 28 H 1.09001 * 109.46617 * 120.02467 * 1 2 3 29 29 H 1.08989 * 109.47243 * 240.02369 * 1 2 3 30 30 H 1.08001 * 120.00071 * 5.03362 * 6 5 4 31 31 H 1.08006 * 120.05347 * 0.04235 * 8 7 6 32 32 H 1.08005 * 119.82267 * 180.02562 * 9 8 7 33 33 H 1.07997 * 119.76513 * 179.97438 * 10 9 8 34 34 H 1.07996 * 119.94888 * 180.32637 * 11 10 9 35 35 H 0.97008 * 119.99996 * 179.97438 * 17 16 14 36 36 H 1.09006 * 109.47393 * 89.99955 * 26 25 2 37 37 H 1.09003 * 109.47668 * 210.00000 * 26 25 2 38 38 H 1.09007 * 109.47223 * 330.00263 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5071 1.4446 0.0000 4 6 3.9766 0.4788 0.0008 5 7 5.2341 0.9686 0.0006 6 6 5.4340 2.2579 0.1004 7 6 6.7931 2.8004 -0.0106 8 6 7.8648 1.9575 -0.3274 9 6 9.1375 2.4741 -0.4293 10 6 9.3640 3.8255 -0.2192 11 6 8.3169 4.6714 0.0880 12 6 7.0278 4.1705 0.2011 13 8 5.9999 4.9981 0.5086 14 6 6.3108 6.2753 0.8066 15 1 7.3305 6.6186 0.7139 16 6 5.3202 7.1502 1.2265 17 7 5.6369 8.3690 1.6064 18 14 3.5359 6.5979 1.2527 19 1 3.1883 6.1111 2.6120 20 1 2.6583 7.7417 0.8971 21 1 3.3426 5.5015 0.2699 22 6 3.6392 -0.8624 -0.0051 23 6 4.6100 -1.9151 -0.0116 24 7 5.3802 -2.7502 -0.0155 25 6 2.2634 -1.0924 0.0005 26 6 1.6769 -2.4805 0.0003 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3632 -0.5142 -0.8898 29 1 -0.3633 -0.5134 0.8901 30 1 4.5989 2.9227 0.2645 31 1 7.6938 0.9038 -0.4920 32 1 9.9635 1.8228 -0.6743 33 1 10.3659 4.2203 -0.3012 34 1 8.5020 5.7237 0.2448 35 1 4.9439 8.9811 1.8998 36 1 1.5361 -2.8153 -1.0275 37 1 2.3550 -3.1616 0.5145 38 1 0.7154 -2.4688 0.5135 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408813366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:27 Heat of formation + Delta-G solvation = 57.470363 kcal Electronic energy + Delta-G solvation = -23378.290475 eV Core-core repulsion = 19891.753539 eV Total energy + Delta-G solvation = -3486.536936 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 326.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.14729 -40.23138 -38.63962 -37.58439 -37.22640 -34.55760 -33.34575 -31.68032 -30.96247 -30.21017 -27.44885 -26.77635 -26.00667 -24.02264 -22.84839 -21.77610 -20.38229 -19.90009 -19.20284 -18.87938 -18.06711 -16.92027 -16.74650 -16.15247 -16.06242 -15.87683 -15.64483 -15.41842 -14.71156 -14.69714 -14.51754 -14.42147 -14.26292 -14.18121 -14.14057 -14.07705 -13.53511 -13.28884 -13.20591 -13.10870 -12.77872 -12.66759 -12.56305 -12.40085 -12.05358 -11.95688 -11.91657 -11.42521 -10.96464 -10.72915 -10.13045 -9.66073 -9.37315 -8.68655 -8.56217 -6.26604 -1.35191 0.15619 0.22856 0.61066 0.67826 0.85273 1.32051 1.34112 1.49876 1.56649 1.64088 2.23481 2.44437 2.72589 2.79761 2.83777 2.96407 3.10435 3.64554 3.85310 3.94310 4.09977 4.19403 4.29971 4.38909 4.49146 4.56578 4.62236 4.74647 4.77970 4.83755 4.87565 4.94804 5.09543 5.12600 5.22116 5.31864 5.44907 5.51155 5.58999 5.69921 5.80943 6.10048 6.38238 6.51360 6.76740 7.42756 8.53644 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.004319 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.613897 B = 6481.852369 C = 8889.864585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.158 4.158 3 S 0.067 5.933 4 C 0.045 3.955 5 N -0.490 5.490 6 C 0.244 3.756 7 C -0.174 4.174 8 C -0.020 4.020 9 C -0.194 4.194 10 C -0.033 4.033 11 C -0.242 4.242 12 C 0.170 3.830 13 O -0.222 6.222 14 C -0.401 4.401 15 H 0.094 0.906 16 C 0.023 3.977 17 N -0.908 5.908 18 Si 0.948 3.052 19 H -0.265 1.265 20 H -0.266 1.266 21 H -0.252 1.252 22 C -0.051 4.051 23 C 0.303 3.697 24 N -0.454 5.454 25 C -0.075 4.075 26 C -0.093 4.093 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.138 0.862 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.126 0.874 35 H 0.288 0.712 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.193 -15.172 -3.955 18.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.275 4.275 3 S 0.334 5.666 4 C -0.182 4.182 5 N -0.202 5.202 6 C 0.050 3.950 7 C -0.177 4.177 8 C -0.040 4.040 9 C -0.213 4.213 10 C -0.052 4.052 11 C -0.261 4.261 12 C 0.116 3.884 13 O -0.126 6.126 14 C -0.476 4.476 15 H 0.111 0.889 16 C -0.178 4.178 17 N -0.547 5.547 18 Si 0.770 3.230 19 H -0.190 1.190 20 H -0.190 1.190 21 H -0.175 1.175 22 C -0.069 4.069 23 C -0.013 4.013 24 N -0.131 5.131 25 C -0.086 4.086 26 C -0.152 4.152 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.156 0.844 32 H 0.172 0.828 33 H 0.172 0.828 34 H 0.144 0.856 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.076 0.924 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.324 -15.519 -3.942 18.046 hybrid contribution -0.652 0.286 0.319 0.780 sum -8.976 -15.233 -3.623 18.048 Atomic orbital electron populations 1.20554 0.84260 1.04096 1.05026 1.24315 1.01578 0.92268 1.09347 1.85058 0.98084 1.11241 1.72197 1.23910 0.91791 0.96413 1.06098 1.67863 1.17290 1.14396 1.20617 1.24297 0.96450 0.89501 0.84713 1.17881 0.92940 0.90006 1.16910 1.21279 0.91346 0.98973 0.92406 1.21189 0.97075 0.95695 1.07311 1.21479 0.98898 0.93138 0.91657 1.21329 0.92473 1.01644 1.10702 1.19590 0.88040 0.88953 0.91823 1.83407 1.32153 1.21080 1.75999 1.20775 0.98036 0.82887 1.45928 0.88903 1.25178 1.03665 0.94414 0.94562 1.69698 1.36502 1.06548 1.41927 0.85522 0.78269 0.79256 0.79989 1.18973 1.19025 1.17550 1.15416 0.91131 0.86316 1.13991 1.24892 0.92083 0.91789 0.92535 1.81167 1.09412 1.11819 1.10716 1.18527 0.88792 0.98529 1.02776 1.20655 1.01828 0.88817 1.03891 0.90868 0.88120 0.88145 0.87710 0.84448 0.82778 0.82835 0.85628 0.90254 0.89365 0.92412 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.38 71.24 0.67 -0.22 16 2 C -0.16 -3.06 6.45 24.51 0.16 -2.90 16 3 S 0.07 1.80 21.69 -56.49 -1.23 0.57 16 4 C 0.05 1.41 7.08 84.23 0.60 2.01 16 5 N -0.49 -17.15 9.34 -184.80 -1.73 -18.88 16 6 C 0.24 8.99 9.96 87.07 0.87 9.86 16 7 C -0.17 -6.59 5.88 -20.05 -0.12 -6.71 16 8 C -0.02 -0.65 9.58 22.57 0.22 -0.43 16 9 C -0.19 -5.41 10.02 22.24 0.22 -5.19 16 10 C -0.03 -0.98 10.03 22.32 0.22 -0.75 16 11 C -0.24 -9.36 9.16 22.35 0.20 -9.16 16 12 C 0.17 7.24 6.67 22.97 0.15 7.39 16 13 O -0.22 -10.81 7.79 -19.53 -0.15 -10.96 16 14 C -0.40 -21.32 9.94 67.92 0.68 -20.64 16 15 H 0.09 5.12 5.44 -2.91 -0.02 5.10 16 16 C 0.02 1.21 5.49 84.84 0.47 1.68 16 17 N -0.91 -50.34 13.96 21.62 0.30 -50.03 16 18 Si 0.95 41.12 28.62 68.60 1.96 43.09 16 19 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 21 H -0.25 -10.62 7.11 99.48 0.71 -9.92 16 22 C -0.05 -1.42 5.75 -21.71 -0.12 -1.54 16 23 C 0.30 9.28 14.36 88.33 1.27 10.55 16 24 N -0.45 -15.10 18.54 19.00 0.35 -14.75 16 25 C -0.08 -1.57 5.81 -20.74 -0.12 -1.69 16 26 C -0.09 -1.30 9.53 71.23 0.68 -0.62 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 0.75 7.88 -2.39 -0.02 0.73 16 30 H 0.11 3.96 6.41 -2.91 -0.02 3.94 16 31 H 0.14 4.23 7.56 -2.91 -0.02 4.21 16 32 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 34 H 0.13 5.21 5.64 -2.91 -0.02 5.19 16 35 H 0.29 14.64 8.31 -92.70 -0.77 13.87 16 36 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.06 0.93 7.48 -2.39 -0.02 0.91 16 38 H 0.10 0.87 7.25 -2.38 -0.02 0.85 16 Total: -1.00 -62.64 352.84 6.67 -55.97 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 1.12 Total: 13.37 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 6.04 Total: -18.38 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -1.07 Total: -83.67 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.15 Total: -10.96 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.96 Total: 43.09 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -1.23 Total: 0.57 kcal Total: -62.64 6.67 -55.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408813366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.444 kcal (2) G-P(sol) polarization free energy of solvation -62.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds