Wall clock time and date at job start Fri Apr 10 2020 18:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 119.99693 * 2 1 4 4 H 1.48496 * 109.47315 * 239.99892 * 3 2 1 5 5 H 1.48500 * 109.47229 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47189 * 119.99671 * 3 2 1 7 7 C 1.38950 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99554 * 180.02562 * 7 2 1 9 9 N 1.37089 * 120.00314 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00368 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99654 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00120 * 180.02562 * 10 9 7 13 13 N 1.46506 * 109.46997 * 180.02562 * 12 10 9 14 14 C 1.34767 * 119.99840 * 179.97438 * 13 12 10 15 15 O 1.21284 * 120.00112 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00089 * 179.97438 * 14 13 12 17 17 O 1.42895 * 109.47289 * 180.02562 * 16 14 13 18 18 C 1.42902 * 113.99895 * 180.02562 * 17 16 14 19 19 C 1.50702 * 109.47123 * 180.02562 * 18 17 16 20 20 C 1.38270 * 119.99101 * 270.27500 * 19 18 17 21 21 C 1.38215 * 120.02537 * 180.27948 * 20 19 18 22 22 C 1.38238 * 120.01126 * 359.44038 * 21 20 19 23 23 C 1.38325 * 119.98878 * 0.28199 * 22 21 20 24 24 Cl 1.73606 * 120.01335 * 179.97438 * 23 22 21 25 25 C 1.38193 * 119.99765 * 89.99902 * 19 18 17 26 26 H 0.96999 * 120.00477 * 0.02562 * 1 2 3 27 27 H 0.97002 * 120.00054 * 0.02562 * 9 7 2 28 28 H 1.08994 * 109.47161 * 60.00088 * 12 10 9 29 29 H 1.08998 * 109.46878 * 299.99865 * 12 10 9 30 30 H 0.96998 * 119.99447 * 359.97438 * 13 12 10 31 31 H 1.09001 * 109.46911 * 59.99650 * 16 14 13 32 32 H 1.09002 * 109.47203 * 300.00368 * 16 14 13 33 33 H 1.08998 * 109.47558 * 59.99668 * 18 17 16 34 34 H 1.09000 * 109.47085 * 299.99520 * 18 17 16 35 35 H 1.07997 * 119.98420 * 0.02562 * 20 19 18 36 36 H 1.08002 * 119.99636 * 179.72646 * 21 20 19 37 37 H 1.07999 * 120.00577 * 180.25936 * 22 21 20 38 38 H 1.08003 * 120.00423 * 0.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2124 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2032 0.0010 9 7 1.3236 -2.3906 0.0005 10 6 1.9975 -3.5578 0.0005 11 8 3.2104 -3.5577 0.0010 12 6 1.2440 -4.8629 0.0000 13 7 2.1961 -5.9764 0.0007 14 6 1.7469 -7.2471 0.0009 15 8 0.5545 -7.4687 -0.0001 16 6 2.7262 -8.3925 0.0010 17 8 2.0118 -9.6300 0.0006 18 6 2.8518 -10.7861 0.0013 19 6 1.9976 -12.0277 0.0001 20 6 1.5998 -12.5941 1.1971 21 6 0.8213 -13.7361 1.1969 22 6 0.4302 -14.3061 -0.0002 23 6 0.8231 -13.7366 -1.1980 24 17 0.3328 -14.4523 -2.7018 25 6 1.6073 -12.5967 -1.1972 26 1 -0.4851 0.8400 -0.0004 27 1 0.3536 -2.3907 -0.0002 28 1 0.6177 -4.9205 -0.8902 29 1 0.6170 -4.9208 0.8897 30 1 3.1497 -5.7991 0.0011 31 1 3.3529 -8.3346 0.8910 32 1 3.3529 -8.3349 -0.8889 33 1 3.4804 -10.7780 0.8917 34 1 3.4816 -10.7781 -0.8882 35 1 1.9010 -12.1463 2.1326 36 1 0.5145 -14.1806 2.1322 37 1 -0.1816 -15.1960 -0.0003 38 1 1.9148 -12.1518 -2.1321 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457831782.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:41 Heat of formation + Delta-G solvation = -101.365542 kcal Electronic energy + Delta-G solvation = -23156.675256 eV Core-core repulsion = 19218.064958 eV Total energy + Delta-G solvation = -3938.610298 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.087 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.99620 -39.57253 -38.29629 -37.48038 -36.72960 -34.48036 -33.70324 -32.47645 -31.41866 -31.12946 -29.28937 -27.10374 -25.85041 -24.30139 -23.09490 -21.90404 -20.40572 -19.63498 -18.18931 -17.74115 -17.05566 -16.95636 -16.68316 -15.93591 -15.73134 -15.54439 -15.14951 -14.87546 -14.64364 -14.29307 -14.13248 -13.80395 -13.75722 -13.73444 -13.20635 -12.54615 -12.42057 -12.20838 -11.92631 -11.88667 -11.73748 -11.66888 -11.64317 -11.14964 -11.12386 -10.52702 -10.33810 -10.00343 -9.73046 -9.65394 -9.36757 -9.09009 -8.85930 -8.67192 -8.13063 -6.53760 -3.96131 0.70311 0.83372 1.76150 2.73862 2.75073 3.11920 3.20077 3.22876 3.28755 3.70766 3.92325 4.09821 4.35892 4.42618 4.62137 4.75136 4.80180 4.83959 4.84328 4.98309 5.00756 5.05892 5.09842 5.14826 5.32924 5.46856 5.79662 5.87236 5.90195 5.92788 6.03444 6.07224 6.36101 6.58498 6.75708 7.43381 7.73554 7.88840 8.37821 8.42962 9.01673 9.36190 9.83812 10.62903 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.032183 B = 0.001638 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.824486 B =17093.530449 C =17347.705864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.307 4.307 8 H 0.105 0.895 9 N -0.548 5.548 10 C 0.427 3.573 11 O -0.599 6.599 12 C 0.111 3.889 13 N -0.706 5.706 14 C 0.511 3.489 15 O -0.528 6.528 16 C 0.045 3.955 17 O -0.355 6.355 18 C 0.100 3.900 19 C -0.076 4.076 20 C -0.091 4.091 21 C -0.111 4.111 22 C -0.105 4.105 23 C -0.038 4.038 24 Cl -0.071 7.071 25 C -0.087 4.087 26 H 0.275 0.725 27 H 0.396 0.604 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.411 0.589 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.645 -27.131 0.464 27.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.182 5.182 10 C 0.213 3.787 11 O -0.486 6.486 12 C -0.017 4.017 13 N -0.362 5.362 14 C 0.296 3.704 15 O -0.403 6.403 16 C -0.034 4.034 17 O -0.274 6.274 18 C 0.024 3.976 19 C -0.076 4.076 20 C -0.109 4.109 21 C -0.129 4.129 22 C -0.124 4.124 23 C -0.065 4.065 24 Cl -0.042 7.042 25 C -0.106 4.106 26 H 0.085 0.915 27 H 0.230 0.770 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.249 0.751 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.182 -27.167 0.324 27.354 hybrid contribution 0.408 0.946 -0.161 1.043 sum 3.590 -26.221 0.163 26.466 Atomic orbital electron populations 1.69607 1.06016 1.28699 1.49047 1.25339 0.95677 0.99973 0.96710 0.85858 0.78768 0.80101 0.79150 1.19773 1.20837 1.19766 1.19682 0.93446 0.81993 1.48488 0.87694 1.41789 1.09519 1.04470 1.62433 1.19716 0.88277 0.84968 0.85750 1.90490 1.13695 1.86825 1.57547 1.20954 0.91771 0.85534 1.03395 1.45561 1.11721 1.04284 1.74663 1.20094 0.89524 0.83499 0.77331 1.90731 1.16504 1.84576 1.48532 1.22200 0.94005 0.84280 1.02963 1.88096 1.31966 1.11828 1.95479 1.21364 0.91529 0.83119 1.01637 1.19500 0.99544 0.95722 0.92832 1.21214 0.96535 0.95241 0.97942 1.21128 0.97972 0.95989 0.97783 1.21118 0.99956 1.00492 0.90827 1.20892 1.01405 0.96769 0.87396 1.98380 1.90508 1.83065 1.32217 1.20981 0.96694 0.94053 0.98850 0.91486 0.76990 0.89728 0.89738 0.75097 0.89943 0.89950 0.91662 0.91808 0.85046 0.84768 0.84847 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.68 13.05 55.50 0.72 -22.96 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.33 29.55 -169.99 -5.02 15.30 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 7 C -0.31 -8.24 9.68 -14.94 -0.14 -8.39 16 8 H 0.11 2.92 7.16 -52.48 -0.38 2.55 16 9 N -0.55 -13.42 5.29 -10.96 -0.06 -13.48 16 10 C 0.43 9.61 7.85 -10.99 -0.09 9.52 16 11 O -0.60 -14.94 15.24 5.55 0.08 -14.85 16 12 C 0.11 2.01 6.15 -5.19 -0.03 1.98 16 13 N -0.71 -11.25 5.53 -61.47 -0.34 -11.59 16 14 C 0.51 7.94 7.91 -10.99 -0.09 7.86 16 15 O -0.53 -10.39 16.50 -14.36 -0.24 -10.63 16 16 C 0.05 0.50 6.42 36.01 0.23 0.73 16 17 O -0.36 -4.43 9.86 -55.14 -0.54 -4.97 16 18 C 0.10 0.84 6.06 36.01 0.22 1.06 16 19 C -0.08 -0.69 5.51 -104.63 -0.58 -1.26 16 20 C -0.09 -0.73 9.70 -39.58 -0.38 -1.12 16 21 C -0.11 -0.79 10.05 -39.59 -0.40 -1.19 16 22 C -0.11 -0.81 9.83 -39.55 -0.39 -1.20 16 23 C -0.04 -0.34 6.32 -39.50 -0.25 -0.59 16 24 Cl -0.07 -0.62 28.96 -51.86 -1.50 -2.12 16 25 C -0.09 -0.81 9.49 -39.55 -0.38 -1.18 16 26 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.40 9.36 7.90 -40.82 -0.32 9.03 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.41 6.18 7.44 -40.82 -0.30 5.88 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -33.09 357.53 -8.23 -41.33 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -4.36 Total: 11.78 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -2.37 Total: 6.79 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.33 Total: -48.02 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.70 Total: -30.45 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.09 -8.23 -41.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457831782.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.037 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds