Wall clock time and date at job start Fri Apr 10 2020 18:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46992 * 114.05807 * 3 2 1 5 5 C 1.36967 * 119.99728 * 277.60293 * 4 3 2 6 6 H 1.08002 * 119.99920 * 160.67062 * 5 4 3 7 7 C 1.38979 * 119.99835 * 340.66978 * 5 4 3 8 8 N 1.31414 * 120.00060 * 40.71314 * 7 5 4 9 9 Si 1.86800 * 120.00122 * 220.70969 * 7 5 4 10 10 H 1.48505 * 109.46939 * 90.00131 * 9 7 5 11 11 H 1.48498 * 109.47287 * 210.00210 * 9 7 5 12 12 H 1.48499 * 109.47184 * 330.00427 * 9 7 5 13 13 C 1.34775 * 120.00538 * 97.59954 * 4 3 2 14 14 O 1.21639 * 120.00184 * 187.63543 * 13 4 3 15 15 C 1.47301 * 119.99419 * 7.63442 * 13 4 3 16 16 C 1.36492 * 127.20096 * 334.48944 * 15 13 4 17 17 O 1.33678 * 108.37914 * 179.97438 * 16 15 13 18 18 C 1.34220 * 110.91076 * 359.97438 * 17 16 15 19 19 S 1.76195 * 125.42598 * 180.02562 * 18 17 16 20 20 O 1.42100 * 106.40320 * 23.56398 * 19 18 17 21 21 O 1.42100 * 106.40104 * 156.49011 * 19 18 17 22 22 N 1.65607 * 107.21865 * 270.02620 * 19 18 17 23 23 C 1.46499 * 120.00076 * 89.99937 * 22 19 18 24 24 C 1.46501 * 119.99822 * 270.00343 * 22 19 18 25 25 C 1.34169 * 109.14190 * 0.02562 * 18 17 16 26 26 H 4.40645 * 5.51391 * 179.97438 * 4 1 2 27 27 H 1.08994 * 109.47195 * 354.05610 * 3 2 1 28 28 H 1.08997 * 109.46650 * 234.05144 * 3 2 1 29 29 H 0.97001 * 120.00157 * 179.97438 * 8 7 5 30 30 H 1.08006 * 125.81122 * 359.97364 * 16 15 13 31 31 H 1.09001 * 109.46549 * 90.00173 * 23 22 19 32 32 H 1.08996 * 109.46739 * 209.99721 * 23 22 19 33 33 H 1.09000 * 109.47104 * 330.00347 * 23 22 19 34 34 H 1.09003 * 109.47575 * 59.99609 * 24 22 19 35 35 H 1.08998 * 109.47137 * 179.97438 * 24 22 19 36 36 H 1.09006 * 109.47225 * 299.99938 * 24 22 19 37 37 H 1.08001 * 127.01853 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5640 -1.2612 5 6 3.2147 -0.2251 -2.3779 6 1 3.2666 0.2281 -3.3568 7 6 3.2297 -1.6090 -2.2511 8 7 2.4426 -2.1975 -1.3787 9 14 4.3685 -2.6327 -3.3210 10 1 5.6731 -2.8041 -2.6326 11 1 3.7572 -3.9644 -3.5619 12 1 4.5807 -1.9433 -4.6191 13 6 3.5036 1.8586 -1.3229 14 8 3.7759 2.3629 -2.3958 15 6 3.5778 2.6627 -0.0910 16 6 2.8894 2.4593 1.0699 17 8 3.2431 3.4091 1.9416 18 6 4.1468 4.2419 1.4021 19 16 4.8723 5.6269 2.2146 20 8 4.7736 5.3711 3.6089 21 8 6.1061 5.8775 1.5557 22 7 3.9050 6.9361 1.9097 23 6 2.8008 7.2581 2.8170 24 6 4.1536 7.7721 0.7326 25 6 4.4097 3.8517 0.1456 26 1 -1.0501 -0.0003 0.0001 27 1 3.0098 -1.0213 0.1064 28 1 3.0090 0.6041 0.8319 29 1 2.4528 -3.1635 -1.2905 30 1 2.1796 1.6661 1.2531 31 1 3.1561 7.9319 3.5967 32 1 1.9996 7.7405 2.2572 33 1 2.4254 6.3415 3.2721 34 1 4.0674 7.1654 -0.1689 35 1 3.4212 8.5787 0.6987 36 1 5.1569 8.1941 0.7919 37 1 5.0934 4.3158 -0.5498 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491022435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:11 Heat of formation + Delta-G solvation = 16.231343 kcal Electronic energy + Delta-G solvation = -25592.928523 eV Core-core repulsion = 21661.461315 eV Total energy + Delta-G solvation = -3931.467208 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.38343 -38.63450 -37.47686 -36.44408 -36.05458 -35.39382 -32.99463 -32.33572 -31.53187 -30.07279 -28.38364 -26.76376 -25.35499 -24.98636 -22.58114 -22.21168 -20.22349 -18.99725 -18.27503 -17.96680 -17.63363 -16.96464 -16.43172 -16.25625 -16.00021 -15.38568 -14.86359 -14.66837 -14.51589 -14.34625 -14.20713 -13.48408 -13.38546 -13.09535 -12.89452 -12.74984 -12.51942 -12.41695 -12.29558 -11.98709 -11.96112 -11.81534 -11.75668 -11.58801 -11.14975 -10.69529 -10.40518 -9.79634 -9.78062 -9.54658 -9.43433 -8.92141 -8.81067 -8.68210 -8.24968 -6.77660 -3.92841 0.04774 1.23583 1.99059 2.64476 3.03394 3.08701 3.19660 3.23896 3.42747 3.51215 3.63545 3.95605 4.06981 4.28609 4.45110 4.57873 4.79885 4.94003 4.96954 5.06569 5.12235 5.23515 5.31180 5.48680 5.51542 5.52414 5.57810 5.61467 5.89167 5.95908 6.14947 6.30693 6.63059 6.76282 6.88544 7.32379 7.89594 8.22659 8.42693 8.91689 9.11519 9.71356 10.26949 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.021501 B = 0.003488 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.928410 B = 8026.557494 C = 8536.761209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.141 4.141 3 C 0.177 3.823 4 N -0.421 5.421 5 C -0.333 4.333 6 H 0.113 0.887 7 C 0.055 3.945 8 N -0.828 5.828 9 Si 0.904 3.096 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.265 1.265 13 C 0.501 3.499 14 O -0.578 6.578 15 C -0.205 4.205 16 C 0.014 3.986 17 O -0.129 6.129 18 C -0.595 4.595 19 S 2.728 3.272 20 O -0.940 6.940 21 O -0.934 6.934 22 N -1.001 6.001 23 C 0.091 3.909 24 C 0.085 3.915 25 C -0.037 4.037 26 H 0.207 0.793 27 H 0.135 0.865 28 H 0.080 0.920 29 H 0.274 0.726 30 H 0.233 0.767 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.269 13.458 9.508 16.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.142 4.142 3 C 0.055 3.945 4 N -0.137 5.137 5 C -0.458 4.458 6 H 0.130 0.870 7 C -0.153 4.153 8 N -0.462 5.462 9 Si 0.729 3.271 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.189 1.189 13 C 0.291 3.709 14 O -0.463 6.463 15 C -0.211 4.211 16 C -0.059 4.059 17 O -0.023 6.023 18 C -0.724 4.724 19 S 2.811 3.189 20 O -0.930 6.930 21 O -0.924 6.924 22 N -0.841 5.841 23 C -0.054 4.054 24 C -0.060 4.060 25 C -0.059 4.059 26 H 0.223 0.777 27 H 0.152 0.848 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.249 0.751 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.574 13.506 9.785 16.689 hybrid contribution -0.488 -1.307 -1.257 1.878 sum -1.062 12.200 8.529 14.923 Atomic orbital electron populations 1.24522 0.95540 1.03910 1.01650 1.23329 0.94434 0.97595 0.98876 1.19582 0.84300 1.03446 0.87169 1.43616 1.52738 1.08016 1.09370 1.19543 1.51357 0.87247 0.87649 0.86962 1.25341 0.95413 0.96965 0.97592 1.70277 1.28489 1.11419 1.36032 0.86297 0.81433 0.78325 0.81066 1.19857 1.21077 1.18896 1.16682 0.85811 0.81725 0.86711 1.90630 1.56128 1.70341 1.29249 1.22114 1.02446 0.99757 0.96773 1.25996 0.99581 0.92163 0.88111 1.83896 1.46329 1.32402 1.39715 1.35491 1.11440 1.17499 1.07995 1.01495 0.72787 0.71382 0.73222 1.93587 1.86084 1.84498 1.28840 1.93641 1.37852 1.83846 1.77073 1.57387 1.48022 1.42592 1.36147 1.21611 0.88599 1.02376 0.92846 1.21661 1.02753 0.95473 0.86091 1.22917 0.95988 0.93538 0.93497 0.77650 0.84788 0.90259 0.91509 0.75115 0.91870 0.90631 0.90512 0.91708 0.89767 0.91011 0.81058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.45 19.25 29.55 0.57 -3.88 16 2 C -0.14 -2.94 11.37 -37.12 -0.42 -3.36 16 3 C 0.18 3.78 4.81 -6.83 -0.03 3.74 16 4 N -0.42 -10.46 2.61 -119.20 -0.31 -10.77 16 5 C -0.33 -8.93 9.15 -14.98 -0.14 -9.06 16 6 H 0.11 3.22 7.51 -52.49 -0.39 2.83 16 7 C 0.06 1.38 5.01 -17.46 -0.09 1.29 16 8 N -0.83 -20.24 9.97 55.50 0.55 -19.69 16 9 Si 0.90 19.52 29.69 -169.99 -5.05 14.48 16 10 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 13 C 0.50 12.38 7.59 -12.58 -0.10 12.29 16 14 O -0.58 -16.12 16.71 5.24 0.09 -16.03 16 15 C -0.21 -4.17 5.98 -103.28 -0.62 -4.79 16 16 C 0.01 0.25 9.87 30.10 0.30 0.54 16 17 O -0.13 -2.10 10.52 7.58 0.08 -2.02 16 18 C -0.60 -9.35 7.32 29.30 0.21 -9.13 16 19 S 2.73 36.03 5.80 -107.50 -0.62 35.41 16 20 O -0.94 -14.24 17.09 -57.28 -0.98 -15.22 16 21 O -0.93 -13.92 16.97 -57.17 -0.97 -14.89 16 22 N -1.00 -9.83 3.58 -129.20 -0.46 -10.30 16 23 C 0.09 0.69 10.26 59.85 0.61 1.31 16 24 C 0.09 0.67 10.30 59.85 0.62 1.28 16 25 C -0.04 -0.66 10.79 -37.45 -0.40 -1.06 16 26 H 0.21 3.00 7.80 -54.08 -0.42 2.57 16 27 H 0.13 3.02 5.61 -51.93 -0.29 2.73 16 28 H 0.08 1.44 3.78 -51.93 -0.20 1.25 16 29 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 30 H 0.23 3.63 4.44 -52.48 -0.23 3.40 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.41 7.92 -51.93 -0.41 0.00 16 33 H 0.08 0.61 7.79 -51.93 -0.40 0.21 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.44 7.79 -51.93 -0.40 0.04 16 36 H 0.07 0.53 8.01 -51.93 -0.42 0.11 16 37 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 LS Contribution 339.26 15.07 5.11 5.11 Total: -1.00 -34.17 339.26 -5.62 -39.79 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -3.58 Total: 4.98 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 0.51 Total: -10.84 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: -0.22 Total: -40.76 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -1.78 Total: -48.17 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.05 Total: 14.48 kcal Atomic # 16 Polarization: 36.03 SS G_CDS: -0.62 Total: 35.41 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.17 -5.62 -39.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491022435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.018 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds