Wall clock time and date at job start Fri Apr 10 2020 18:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46992 * 114.05807 * 3 2 1 5 5 C 1.36967 * 119.99728 * 277.60293 * 4 3 2 6 6 H 1.08002 * 119.99920 * 160.67062 * 5 4 3 7 7 C 1.38979 * 119.99835 * 340.66978 * 5 4 3 8 8 N 1.31414 * 120.00060 * 40.71314 * 7 5 4 9 9 Si 1.86800 * 120.00122 * 220.70969 * 7 5 4 10 10 H 1.48505 * 109.46939 * 90.00131 * 9 7 5 11 11 H 1.48498 * 109.47287 * 210.00210 * 9 7 5 12 12 H 1.48499 * 109.47184 * 330.00427 * 9 7 5 13 13 C 1.34775 * 120.00538 * 97.59954 * 4 3 2 14 14 O 1.21639 * 120.00184 * 187.63543 * 13 4 3 15 15 C 1.47301 * 119.99419 * 7.63442 * 13 4 3 16 16 C 1.36492 * 127.20096 * 334.48944 * 15 13 4 17 17 O 1.33678 * 108.37914 * 179.97438 * 16 15 13 18 18 C 1.34220 * 110.91076 * 359.97438 * 17 16 15 19 19 S 1.76195 * 125.42598 * 180.02562 * 18 17 16 20 20 O 1.42100 * 106.40320 * 23.56398 * 19 18 17 21 21 O 1.42100 * 106.40104 * 156.49011 * 19 18 17 22 22 N 1.65607 * 107.21865 * 270.02620 * 19 18 17 23 23 C 1.46499 * 120.00076 * 89.99937 * 22 19 18 24 24 C 1.46501 * 119.99822 * 270.00343 * 22 19 18 25 25 C 1.34169 * 109.14190 * 0.02562 * 18 17 16 26 26 H 4.40645 * 5.51391 * 179.97438 * 4 1 2 27 27 H 1.08994 * 109.47195 * 354.05610 * 3 2 1 28 28 H 1.08997 * 109.46650 * 234.05144 * 3 2 1 29 29 H 0.97001 * 120.00157 * 179.97438 * 8 7 5 30 30 H 1.08006 * 125.81122 * 359.97364 * 16 15 13 31 31 H 1.09001 * 109.46549 * 90.00173 * 23 22 19 32 32 H 1.08996 * 109.46739 * 209.99721 * 23 22 19 33 33 H 1.09000 * 109.47104 * 330.00347 * 23 22 19 34 34 H 1.09003 * 109.47575 * 59.99609 * 24 22 19 35 35 H 1.08998 * 109.47137 * 179.97438 * 24 22 19 36 36 H 1.09006 * 109.47225 * 299.99938 * 24 22 19 37 37 H 1.08001 * 127.01853 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5640 -1.2612 5 6 3.2147 -0.2251 -2.3779 6 1 3.2666 0.2281 -3.3568 7 6 3.2297 -1.6090 -2.2511 8 7 2.4426 -2.1975 -1.3787 9 14 4.3685 -2.6327 -3.3210 10 1 5.6731 -2.8041 -2.6326 11 1 3.7572 -3.9644 -3.5619 12 1 4.5807 -1.9433 -4.6191 13 6 3.5036 1.8586 -1.3229 14 8 3.7759 2.3629 -2.3958 15 6 3.5778 2.6627 -0.0910 16 6 2.8894 2.4593 1.0699 17 8 3.2431 3.4091 1.9416 18 6 4.1468 4.2419 1.4021 19 16 4.8723 5.6269 2.2146 20 8 4.7736 5.3711 3.6089 21 8 6.1061 5.8775 1.5557 22 7 3.9050 6.9361 1.9097 23 6 2.8008 7.2581 2.8170 24 6 4.1536 7.7721 0.7326 25 6 4.4097 3.8517 0.1456 26 1 -1.0501 -0.0003 0.0001 27 1 3.0098 -1.0213 0.1064 28 1 3.0090 0.6041 0.8319 29 1 2.4528 -3.1635 -1.2905 30 1 2.1796 1.6661 1.2531 31 1 3.1561 7.9319 3.5967 32 1 1.9996 7.7405 2.2572 33 1 2.4254 6.3415 3.2721 34 1 4.0674 7.1654 -0.1689 35 1 3.4212 8.5787 0.6987 36 1 5.1569 8.1941 0.7919 37 1 5.0934 4.3158 -0.5498 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491022435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:10 Heat of formation + Delta-G solvation = -8.886479 kcal Electronic energy + Delta-G solvation = -25594.017714 eV Core-core repulsion = 21661.461315 eV Total energy + Delta-G solvation = -3932.556399 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.79928 -40.46212 -38.60966 -37.27520 -37.26345 -37.10329 -34.69971 -33.89450 -33.25219 -31.54445 -28.98481 -28.46453 -27.18891 -25.70675 -24.22595 -23.52150 -21.73831 -20.16849 -19.97153 -19.37860 -18.69191 -18.51676 -17.97717 -17.34202 -17.23725 -17.00059 -16.48379 -16.12062 -15.98393 -15.52879 -15.46919 -14.89060 -14.60743 -14.44200 -14.27284 -14.12299 -13.83709 -13.60388 -13.48617 -13.39625 -13.34122 -13.00633 -12.81788 -12.67748 -12.57444 -12.52003 -12.15893 -11.42799 -11.23462 -11.12849 -10.72556 -10.65485 -10.33756 -10.16184 -10.13401 -8.68925 -5.92798 -1.01367 -0.10629 0.45816 1.31521 1.41080 1.47877 1.52333 1.81404 1.87887 2.05295 2.21222 2.27038 2.41109 2.72330 3.08773 3.21957 3.46746 3.56883 3.70326 3.78160 3.95291 4.12880 4.37527 4.47778 4.53037 4.58072 4.75716 4.81097 4.95068 4.96847 4.98731 5.00154 5.23664 5.37746 5.41517 5.51414 5.92621 6.30537 6.89100 6.97507 7.21268 7.81983 8.35525 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.021501 B = 0.003488 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.928410 B = 8026.557494 C = 8536.761209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.192 4.192 3 C 0.180 3.820 4 N -0.428 5.428 5 C -0.380 4.380 6 H 0.077 0.923 7 C 0.037 3.963 8 N -0.830 5.830 9 Si 0.965 3.035 10 H -0.268 1.268 11 H -0.268 1.268 12 H -0.277 1.277 13 C 0.489 3.511 14 O -0.627 6.627 15 C -0.239 4.239 16 C 0.038 3.962 17 O -0.120 6.120 18 C -0.579 4.579 19 S 2.743 3.257 20 O -0.956 6.956 21 O -0.951 6.951 22 N -0.991 5.991 23 C 0.077 3.923 24 C 0.073 3.927 25 C -0.054 4.054 26 H 0.246 0.754 27 H 0.120 0.880 28 H 0.107 0.893 29 H 0.284 0.716 30 H 0.250 0.750 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.350 13.990 11.181 18.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.193 4.193 3 C 0.059 3.941 4 N -0.144 5.144 5 C -0.505 4.505 6 H 0.095 0.905 7 C -0.173 4.173 8 N -0.463 5.463 9 Si 0.788 3.212 10 H -0.193 1.193 11 H -0.193 1.193 12 H -0.202 1.202 13 C 0.281 3.719 14 O -0.517 6.517 15 C -0.244 4.244 16 C -0.035 4.035 17 O -0.014 6.014 18 C -0.704 4.704 19 S 2.823 3.177 20 O -0.946 6.946 21 O -0.941 6.941 22 N -0.833 5.833 23 C -0.067 4.067 24 C -0.071 4.071 25 C -0.075 4.075 26 H 0.262 0.738 27 H 0.137 0.863 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.265 0.735 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.135 0.865 36 H 0.094 0.906 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.688 13.979 11.492 18.175 hybrid contribution -0.254 -1.385 -1.703 2.210 sum -1.942 12.594 9.788 16.069 Atomic orbital electron populations 1.25473 0.96456 1.01451 0.99151 1.23428 0.94883 0.99872 1.01143 1.19540 0.85265 1.02868 0.86411 1.43733 1.52611 1.08028 1.09984 1.19312 1.55433 0.88406 0.87353 0.90524 1.25891 0.95423 0.96945 0.99000 1.70280 1.27795 1.12130 1.36101 0.85419 0.79628 0.77224 0.78979 1.19300 1.19282 1.20226 1.17271 0.85048 0.82002 0.87591 1.90566 1.58234 1.71478 1.31393 1.21844 1.05269 1.01098 0.96238 1.26080 0.98497 0.91978 0.86962 1.83927 1.46163 1.32078 1.39191 1.36108 1.09853 1.17435 1.07021 1.01181 0.72730 0.71300 0.72475 1.93562 1.86436 1.84923 1.29654 1.93612 1.39426 1.83869 1.77239 1.57215 1.48357 1.40639 1.37129 1.21948 0.88628 1.02806 0.93320 1.21956 1.04234 0.95926 0.85006 1.23023 0.96580 0.93232 0.94704 0.73751 0.86300 0.87646 0.90568 0.73504 0.90269 0.87990 0.90928 0.92139 0.86516 0.90572 0.80439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.30 19.25 74.32 1.43 -5.87 16 2 C -0.19 -7.86 11.37 31.13 0.35 -7.51 16 3 C 0.18 7.77 4.81 84.57 0.41 8.17 16 4 N -0.43 -22.11 2.61 -649.27 -1.69 -23.80 16 5 C -0.38 -21.33 9.15 84.07 0.77 -20.56 16 6 H 0.08 4.74 7.51 -2.91 -0.02 4.72 16 7 C 0.04 1.85 5.01 84.93 0.43 2.27 16 8 N -0.83 -40.34 9.97 21.67 0.22 -40.12 16 9 Si 0.96 40.49 29.69 68.60 2.04 42.52 16 10 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 11 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 12 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 13 C 0.49 25.37 7.59 86.63 0.66 26.02 16 14 O -0.63 -37.23 16.71 -4.16 -0.07 -37.30 16 15 C -0.24 -9.91 5.98 -18.99 -0.11 -10.02 16 16 C 0.04 1.28 9.87 67.41 0.67 1.95 16 17 O -0.12 -3.74 10.52 4.19 0.04 -3.69 16 18 C -0.58 -17.63 7.32 66.89 0.49 -17.14 16 19 S 2.74 68.73 5.80 -56.49 -0.33 68.40 16 20 O -0.96 -27.43 17.09 -127.90 -2.19 -29.61 16 21 O -0.95 -27.56 16.97 -128.00 -2.17 -29.74 16 22 N -0.99 -17.13 3.58 -562.68 -2.02 -19.15 16 23 C 0.08 0.94 10.26 127.77 1.31 2.25 16 24 C 0.07 0.97 10.30 127.77 1.32 2.28 16 25 C -0.05 -1.92 10.79 23.65 0.26 -1.66 16 26 H 0.25 6.18 7.80 -4.41 -0.03 6.14 16 27 H 0.12 5.43 5.61 -2.39 -0.01 5.42 16 28 H 0.11 3.83 3.78 -2.39 -0.01 3.82 16 29 H 0.28 12.67 8.31 -92.71 -0.77 11.90 16 30 H 0.25 7.47 4.44 -2.91 -0.01 7.46 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 0.72 7.92 -2.39 -0.02 0.70 16 33 H 0.07 0.97 7.79 -2.39 -0.02 0.95 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.12 0.81 7.79 -2.39 -0.02 0.79 16 36 H 0.08 0.97 8.01 -2.38 -0.02 0.95 16 37 H 0.18 5.94 8.06 -2.91 -0.02 5.92 16 Total: -1.00 -76.38 339.26 2.92 -73.46 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 1.12 Total: 18.85 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: 7.97 Total: -19.81 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -3.49 Total: -83.07 kcal Atomic # 8 Polarization: -95.96 SS G_CDS: -4.38 Total: -100.34 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.04 Total: 42.52 kcal Atomic # 16 Polarization: 68.73 SS G_CDS: -0.33 Total: 68.40 kcal Total: -76.38 2.92 -73.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491022435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.571 kcal (2) G-P(sol) polarization free energy of solvation -76.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds