Wall clock time and date at job start Fri Apr 10 2020 18:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 116.99952 * 2 1 4 4 O 1.20831 * 120.00107 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00161 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.47125 * 59.98941 * 5 3 2 7 7 N 1.46900 * 109.46953 * 179.97438 * 5 3 2 8 8 C 1.46904 * 110.99814 * 274.99397 * 7 5 3 9 9 C 1.50696 * 109.46834 * 180.02562 * 8 7 5 10 10 O 1.21301 * 120.00402 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00006 * 180.02562 * 9 8 7 12 12 C 1.37098 * 120.00206 * 179.97438 * 11 9 8 13 13 H 1.07998 * 120.00147 * 359.97438 * 12 11 9 14 14 C 1.38953 * 120.00027 * 179.97438 * 12 11 9 15 15 N 1.31410 * 119.99980 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99833 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47234 * 60.00429 * 16 14 12 18 18 H 1.48509 * 109.46959 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47560 * 300.00244 * 16 14 12 20 20 C 1.50698 * 109.46783 * 299.99378 * 5 3 2 21 21 C 1.38236 * 120.00579 * 264.99827 * 20 5 3 22 22 C 1.38220 * 120.01151 * 179.97438 * 21 20 5 23 23 C 1.38265 * 120.02927 * 0.02562 * 22 21 20 24 24 C 1.38196 * 120.01248 * 359.97438 * 23 22 21 25 25 C 1.38334 * 120.00580 * 84.97644 * 20 5 3 26 26 Cl 1.73595 * 120.01372 * 0.04429 * 25 20 5 27 27 H 1.08987 * 109.47415 * 300.00800 * 1 2 3 28 28 H 1.09001 * 109.46836 * 60.00935 * 1 2 3 29 29 H 1.09002 * 109.46659 * 180.02562 * 1 2 3 30 30 H 1.00899 * 111.00408 * 38.95295 * 7 5 3 31 31 H 1.09005 * 109.47205 * 300.00362 * 8 7 5 32 32 H 1.08996 * 109.46832 * 60.00721 * 8 7 5 33 33 H 0.97003 * 120.00333 * 359.97438 * 11 9 8 34 34 H 0.97004 * 119.99676 * 179.97438 * 15 14 12 35 35 H 1.07991 * 119.99550 * 0.02562 * 21 20 5 36 36 H 1.07998 * 119.98921 * 180.02562 * 22 21 20 37 37 H 1.07999 * 119.99413 * 179.70049 * 23 22 21 38 38 H 1.08002 * 120.00655 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9565 0.7805 -0.8890 7 7 3.9828 2.6836 -0.0002 8 6 4.0181 3.2214 -1.3668 9 6 4.4491 4.6649 -1.3275 10 8 4.7015 5.1939 -0.2655 11 7 4.5530 5.3685 -2.4723 12 6 4.9446 6.6819 -2.4366 13 1 5.1694 7.1528 -1.4910 14 6 5.0523 7.4071 -3.6169 15 7 4.7784 6.8342 -4.7674 16 14 5.5852 9.1968 -3.5681 17 1 6.9376 9.2943 -2.9626 18 1 5.6205 9.7406 -4.9496 19 1 4.6205 9.9786 -2.7535 20 6 4.1046 0.5921 1.2315 21 6 4.3946 1.3330 2.3620 22 6 4.8878 0.7068 3.4912 23 6 5.0919 -0.6607 3.4907 24 6 4.8024 -1.4024 2.3611 25 6 4.3082 -0.7761 1.2305 26 17 3.9449 -1.7070 -0.1890 27 1 -0.3633 0.5139 0.8898 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 3.3826 3.2385 0.5914 31 1 4.7258 2.6474 -1.9650 32 1 3.0253 3.1503 -1.8109 33 1 4.3508 4.9457 -3.3216 34 1 4.8532 7.3406 -5.5913 35 1 4.2350 2.4010 2.3632 36 1 5.1138 1.2859 4.3743 37 1 5.4819 -1.1487 4.3717 38 1 4.9623 -2.4705 2.3607 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000507209143.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:25 Heat of formation + Delta-G solvation = -113.283518 kcal Electronic energy + Delta-G solvation = -25075.429277 eV Core-core repulsion = 21136.302177 eV Total energy + Delta-G solvation = -3939.127101 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.02045 -40.29718 -40.07797 -37.99741 -37.34580 -36.67870 -35.88896 -33.36151 -32.76452 -31.67216 -29.56641 -28.60380 -26.97115 -25.48673 -23.47961 -23.36726 -21.61010 -21.22294 -19.99204 -19.09863 -18.63638 -18.12315 -17.57896 -17.43904 -16.74364 -16.56134 -16.29347 -15.98059 -15.85833 -15.25644 -14.89798 -14.76632 -14.66888 -14.48741 -14.23565 -14.00485 -13.58948 -13.48133 -13.27797 -13.04901 -12.87864 -12.58968 -12.44629 -12.38957 -12.21153 -12.12760 -11.99091 -11.86127 -11.66325 -11.52176 -10.45730 -10.05151 -9.89210 -9.84463 -9.61517 -8.48049 -5.97308 0.11412 0.31167 0.93110 1.19898 1.39308 1.41277 1.52457 1.61161 2.00048 2.26315 2.55176 2.77896 3.18263 3.32695 3.41078 3.73415 3.78038 3.98537 4.13929 4.21943 4.25580 4.27910 4.36156 4.42953 4.45744 4.51479 4.65400 4.67629 4.98297 5.19482 5.26122 5.29337 5.39679 5.47897 5.60644 5.87410 5.91995 5.99323 6.52217 6.56105 7.09300 7.51156 8.05676 8.69233 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.003071 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.510857 B = 9114.892236 C = 9749.802838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.342 6.342 3 C 0.442 3.558 4 O -0.533 6.533 5 C 0.138 3.862 6 H 0.138 0.862 7 N -0.636 5.636 8 C 0.057 3.943 9 C 0.442 3.558 10 O -0.619 6.619 11 N -0.569 5.569 12 C -0.336 4.336 13 H 0.081 0.919 14 C -0.012 4.012 15 N -0.920 5.920 16 Si 0.995 3.005 17 H -0.270 1.270 18 H -0.270 1.270 19 H -0.272 1.272 20 C -0.087 4.087 21 C -0.094 4.094 22 C -0.120 4.120 23 C -0.094 4.094 24 C -0.114 4.114 25 C -0.026 4.026 26 Cl -0.060 7.060 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.135 0.865 30 H 0.354 0.646 31 H 0.118 0.882 32 H 0.060 0.940 33 H 0.396 0.604 34 H 0.278 0.722 35 H 0.123 0.877 36 H 0.150 0.850 37 H 0.166 0.834 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.856 -22.074 11.672 25.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.256 6.256 3 C 0.283 3.717 4 O -0.423 6.423 5 C 0.025 3.975 6 H 0.156 0.844 7 N -0.268 5.268 8 C -0.075 4.075 9 C 0.229 3.771 10 O -0.505 6.505 11 N -0.206 5.206 12 C -0.465 4.465 13 H 0.099 0.901 14 C -0.212 4.212 15 N -0.561 5.561 16 Si 0.818 3.182 17 H -0.195 1.195 18 H -0.194 1.194 19 H -0.197 1.197 20 C -0.088 4.088 21 C -0.112 4.112 22 C -0.138 4.138 23 C -0.112 4.112 24 C -0.132 4.132 25 C -0.053 4.053 26 Cl -0.031 7.031 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.153 0.847 30 H 0.175 0.825 31 H 0.135 0.865 32 H 0.078 0.922 33 H 0.230 0.770 34 H 0.088 0.912 35 H 0.141 0.859 36 H 0.167 0.833 37 H 0.183 0.817 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.294 -21.581 12.039 24.931 hybrid contribution -1.233 1.126 -1.130 2.016 sum -4.527 -20.455 10.909 23.620 Atomic orbital electron populations 1.23563 0.75210 1.05719 1.02271 1.86608 1.24539 1.31603 1.82860 1.25097 0.93268 0.81945 0.71347 1.90708 1.67288 1.37510 1.46800 1.20333 0.85181 0.91482 1.00471 0.84446 1.60570 1.55558 1.00473 1.10226 1.21694 1.01649 0.92946 0.91177 1.20497 0.83425 0.89080 0.84081 1.90490 1.56405 1.72591 1.31026 1.41872 1.59829 1.11102 1.07810 1.19664 1.44432 0.87715 0.94729 0.90101 1.26076 0.96793 1.04409 0.93921 1.69672 1.48701 1.39326 0.98356 0.84964 0.78863 0.76670 0.77689 1.19479 1.19417 1.19746 1.19091 1.03209 0.91993 0.94555 1.21124 0.97573 1.00309 0.92234 1.21556 0.98266 0.95728 0.98273 1.21561 0.97584 0.93456 0.98615 1.21337 0.99016 1.01819 0.91077 1.20859 1.03224 0.90622 0.90574 1.98370 1.93185 1.72446 1.39076 0.92260 0.92256 0.84741 0.82460 0.86455 0.92184 0.76979 0.91214 0.85924 0.83263 0.81652 0.82404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.34 -8.07 9.19 -51.37 -0.47 -8.54 16 3 C 0.44 12.74 7.07 71.24 0.50 13.25 16 4 O -0.53 -18.79 15.06 21.95 0.33 -18.46 16 5 C 0.14 3.83 2.23 43.42 0.10 3.93 16 6 H 0.14 3.49 6.78 -2.39 -0.02 3.47 16 7 N -0.64 -21.92 4.73 -503.37 -2.38 -24.30 16 8 C 0.06 2.14 5.86 85.55 0.50 2.64 16 9 C 0.44 21.92 7.82 87.66 0.69 22.60 16 10 O -0.62 -35.11 15.78 -3.09 -0.05 -35.16 16 11 N -0.57 -30.15 5.29 -306.98 -1.62 -31.77 16 12 C -0.34 -19.47 9.68 84.04 0.81 -18.66 16 13 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 14 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 15 N -0.92 -50.43 13.05 21.66 0.28 -50.15 16 16 Si 0.99 43.49 29.55 68.60 2.03 45.51 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 20 C -0.09 -2.16 4.98 -19.84 -0.10 -2.26 16 21 C -0.09 -2.30 9.32 22.26 0.21 -2.09 16 22 C -0.12 -2.16 10.05 22.27 0.22 -1.94 16 23 C -0.09 -1.31 10.05 22.27 0.22 -1.09 16 24 C -0.11 -1.79 9.83 22.29 0.22 -1.57 16 25 C -0.03 -0.53 6.26 22.33 0.14 -0.39 16 26 Cl -0.06 -1.18 26.17 -2.72 -0.07 -1.25 16 27 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 28 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 29 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.35 13.49 6.88 -89.69 -0.62 12.87 16 31 H 0.12 3.74 8.06 -2.38 -0.02 3.72 16 32 H 0.06 2.16 7.62 -2.39 -0.02 2.14 16 33 H 0.40 19.96 7.90 -92.71 -0.73 19.23 16 34 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 35 H 0.12 3.42 6.89 -2.92 -0.02 3.40 16 36 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 38 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -71.91 347.51 3.00 -68.91 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: -0.22 Total: 39.32 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 5.18 Total: 15.88 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -3.72 Total: -106.21 kcal Atomic # 8 Polarization: -61.97 SS G_CDS: -0.19 Total: -62.16 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.07 Total: -1.25 kcal Total: -71.91 3.00 -68.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507209143.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.376 kcal (2) G-P(sol) polarization free energy of solvation -71.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds