Wall clock time and date at job start Fri Apr 10 2020 18:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34236 * 116.99926 * 2 1 4 4 O 1.20821 * 119.99883 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99666 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.46940 * 59.99948 * 5 3 2 7 7 N 1.46901 * 109.46742 * 180.02562 * 5 3 2 8 8 C 1.46905 * 110.99870 * 274.99779 * 7 5 3 9 9 C 1.50697 * 109.47066 * 180.02562 * 8 7 5 10 10 O 1.21297 * 120.00124 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00196 * 180.02562 * 9 8 7 12 12 C 1.37100 * 120.00290 * 180.02562 * 11 9 8 13 13 H 1.07990 * 119.99768 * 359.97438 * 12 11 9 14 14 C 1.38956 * 119.99812 * 180.02562 * 12 11 9 15 15 N 1.31408 * 119.99864 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99403 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47056 * 90.00522 * 16 14 12 18 18 H 1.48505 * 109.46897 * 209.99554 * 16 14 12 19 19 H 1.48495 * 109.47527 * 330.00091 * 16 14 12 20 20 C 1.50693 * 109.47089 * 299.99855 * 5 3 2 21 21 C 1.38265 * 119.99338 * 279.72535 * 20 5 3 22 22 C 1.38223 * 120.02761 * 179.77081 * 21 20 5 23 23 C 1.38240 * 120.00853 * 0.50434 * 22 21 20 24 24 C 1.38323 * 119.98681 * 359.75141 * 23 22 21 25 25 Cl 1.73606 * 120.01107 * 180.02562 * 24 23 22 26 26 C 1.38193 * 119.99466 * 100.00100 * 20 5 3 27 27 H 1.08999 * 109.47334 * 59.99776 * 1 2 3 28 28 H 1.08998 * 109.47348 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47460 * 300.00068 * 1 2 3 30 30 H 1.00901 * 111.00067 * 38.94954 * 7 5 3 31 31 H 1.09001 * 109.46798 * 300.00327 * 8 7 5 32 32 H 1.08998 * 109.46961 * 60.00043 * 8 7 5 33 33 H 0.97009 * 119.99629 * 359.97438 * 11 9 8 34 34 H 0.97004 * 119.99642 * 179.97438 * 15 14 12 35 35 H 1.07999 * 119.98440 * 0.02562 * 21 20 5 36 36 H 1.08000 * 119.99392 * 180.26011 * 22 21 20 37 37 H 1.08001 * 120.00160 * 179.72843 * 23 22 21 38 38 H 1.07995 * 120.00674 * 0.02562 * 26 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9556 0.7809 -0.8908 7 7 3.9828 2.6836 0.0002 8 6 4.0169 3.2232 -1.3658 9 6 4.4480 4.6666 -1.3251 10 8 4.7023 5.1939 -0.2627 11 7 4.5509 5.3717 -2.4690 12 6 4.9436 6.6848 -2.4320 13 1 5.1700 7.1541 -1.4862 14 6 5.0493 7.4118 -3.6115 15 7 4.7732 6.8407 -4.7623 16 14 5.5836 9.2010 -3.5609 17 1 7.0625 9.2793 -3.6719 18 1 4.9629 9.9351 -4.6927 19 1 5.1505 9.8110 -2.2781 20 6 4.1056 0.5915 1.2295 21 6 4.1110 1.2551 2.4425 22 6 4.6011 0.6272 3.5722 23 6 5.0957 -0.6609 3.4876 24 6 5.0954 -1.3233 2.2733 25 17 5.7158 -2.9412 2.1666 26 6 4.5998 -0.6962 1.1438 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.3830 3.2377 0.5929 31 1 4.7240 2.6499 -1.9653 32 1 3.0237 3.1526 -1.8092 33 1 4.3479 4.9499 -3.3187 34 1 4.8466 7.3483 -5.5856 35 1 3.7284 2.2629 2.5081 36 1 4.6012 1.1445 4.5202 37 1 5.4827 -1.1497 4.3695 38 1 4.6000 -1.2126 0.1953 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000507247196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:29 Heat of formation + Delta-G solvation = -117.371087 kcal Electronic energy + Delta-G solvation = -24685.225884 eV Core-core repulsion = 20745.921533 eV Total energy + Delta-G solvation = -3939.304351 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.087 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.00458 -40.29221 -40.07493 -38.03269 -37.43619 -36.55545 -35.85824 -33.34706 -32.80251 -31.67575 -29.60299 -28.58880 -26.96160 -25.39356 -23.61532 -23.41151 -21.57537 -21.19985 -19.97476 -19.07294 -18.60530 -18.09789 -17.55739 -17.37333 -16.70261 -16.52386 -16.30500 -16.13303 -15.84411 -15.34366 -15.02312 -14.63081 -14.62804 -14.49680 -14.26307 -13.99736 -13.56072 -13.48378 -13.25139 -13.04378 -12.87814 -12.55272 -12.45944 -12.42174 -12.35666 -12.12678 -11.89703 -11.87307 -11.77455 -11.51909 -10.43431 -10.03979 -9.95451 -9.75779 -9.65703 -8.47687 -5.96472 0.12088 0.26332 0.94544 1.17245 1.37680 1.41606 1.54321 1.61694 2.02065 2.27089 2.52231 2.84981 3.19136 3.36135 3.43892 3.75942 3.78269 4.04267 4.12278 4.21645 4.26187 4.26895 4.28613 4.41259 4.46903 4.49768 4.66590 4.69314 4.89526 5.20613 5.21973 5.33849 5.36608 5.41065 5.62343 5.79158 5.95375 6.01313 6.53700 6.57497 7.10724 7.52988 8.07875 8.69795 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.002756 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.445312 B =10157.070105 C =11009.153984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.440 3.560 4 O -0.534 6.534 5 C 0.140 3.860 6 H 0.153 0.847 7 N -0.638 5.638 8 C 0.058 3.942 9 C 0.441 3.559 10 O -0.621 6.621 11 N -0.570 5.570 12 C -0.334 4.334 13 H 0.080 0.920 14 C -0.012 4.012 15 N -0.920 5.920 16 Si 0.993 3.007 17 H -0.269 1.269 18 H -0.271 1.271 19 H -0.273 1.273 20 C -0.068 4.068 21 C -0.102 4.102 22 C -0.108 4.108 23 C -0.104 4.104 24 C -0.044 4.044 25 Cl -0.067 7.067 26 C -0.089 4.089 27 H 0.060 0.940 28 H 0.135 0.865 29 H 0.058 0.942 30 H 0.353 0.647 31 H 0.122 0.878 32 H 0.062 0.938 33 H 0.397 0.603 34 H 0.278 0.722 35 H 0.119 0.881 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.215 -21.678 10.802 24.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.265 6.265 3 C 0.282 3.718 4 O -0.423 6.423 5 C 0.028 3.972 6 H 0.170 0.830 7 N -0.270 5.270 8 C -0.074 4.074 9 C 0.228 3.772 10 O -0.507 6.507 11 N -0.208 5.208 12 C -0.464 4.464 13 H 0.098 0.902 14 C -0.212 4.212 15 N -0.560 5.560 16 Si 0.817 3.183 17 H -0.195 1.195 18 H -0.195 1.195 19 H -0.198 1.198 20 C -0.069 4.069 21 C -0.121 4.121 22 C -0.126 4.126 23 C -0.122 4.122 24 C -0.071 4.071 25 Cl -0.038 7.038 26 C -0.108 4.108 27 H 0.079 0.921 28 H 0.153 0.847 29 H 0.077 0.923 30 H 0.174 0.826 31 H 0.140 0.860 32 H 0.080 0.920 33 H 0.231 0.769 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.172 0.828 37 H 0.172 0.828 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.564 -21.244 11.297 24.324 hybrid contribution -1.110 1.030 -0.830 1.727 sum -4.674 -20.214 10.468 23.238 Atomic orbital electron populations 1.23569 0.75048 1.05808 1.02327 1.86539 1.24757 1.32141 1.83088 1.25260 0.93517 0.81743 0.71268 1.90718 1.67391 1.37535 1.46647 1.20430 0.84621 0.91431 1.00728 0.82960 1.60581 1.55666 1.00629 1.10151 1.21712 1.01801 0.92679 0.91241 1.20600 0.83293 0.89280 0.83995 1.90498 1.56362 1.72770 1.31077 1.41886 1.59889 1.11080 1.07903 1.19673 1.44225 0.87795 0.94659 0.90245 1.26050 0.96879 1.04311 0.93977 1.69672 1.48796 1.39230 0.98347 0.84924 0.78609 0.76799 0.77987 1.19471 1.19538 1.19813 1.19109 1.00814 0.93902 0.93118 1.21227 0.98488 0.99750 0.92628 1.21339 0.97605 0.94410 0.99234 1.21357 0.99076 0.94818 0.96996 1.20917 1.02789 0.87714 0.95641 1.98372 1.85894 1.20937 1.98560 1.20962 0.97322 0.93525 0.98988 0.92145 0.84674 0.92311 0.82579 0.85994 0.92032 0.76929 0.91247 0.86341 0.82844 0.82830 0.82962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.35 -7.49 10.48 -51.47 -0.54 -8.03 16 3 C 0.44 11.46 7.07 71.24 0.50 11.96 16 4 O -0.53 -17.61 15.05 21.98 0.33 -17.28 16 5 C 0.14 3.38 2.70 43.42 0.12 3.49 16 6 H 0.15 2.84 7.66 -2.39 -0.02 2.82 16 7 N -0.64 -20.49 5.17 -503.38 -2.60 -23.09 16 8 C 0.06 2.01 5.86 85.55 0.50 2.51 16 9 C 0.44 21.33 7.82 87.66 0.69 22.02 16 10 O -0.62 -34.81 15.78 -3.08 -0.05 -34.86 16 11 N -0.57 -29.66 5.29 -306.99 -1.62 -31.28 16 12 C -0.33 -19.18 9.68 84.04 0.81 -18.36 16 13 H 0.08 4.86 7.16 -2.92 -0.02 4.84 16 14 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 15 N -0.92 -49.89 13.05 21.66 0.28 -49.61 16 16 Si 0.99 43.25 29.55 68.60 2.03 45.27 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 18 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 C -0.07 -1.52 4.88 -19.87 -0.10 -1.62 16 21 C -0.10 -2.35 9.32 22.27 0.21 -2.14 16 22 C -0.11 -1.95 10.05 22.27 0.22 -1.73 16 23 C -0.10 -1.72 9.83 22.29 0.22 -1.50 16 24 C -0.04 -0.80 6.32 22.32 0.14 -0.66 16 25 Cl -0.07 -1.10 28.96 -2.72 -0.08 -1.17 16 26 C -0.09 -1.68 9.45 22.29 0.21 -1.47 16 27 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 28 H 0.14 1.22 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 30 H 0.35 12.80 6.79 -89.69 -0.61 12.19 16 31 H 0.12 3.52 8.06 -2.39 -0.02 3.50 16 32 H 0.06 2.06 7.62 -2.39 -0.02 2.04 16 33 H 0.40 19.52 7.90 -92.70 -0.73 18.79 16 34 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 35 H 0.12 3.00 7.23 -2.91 -0.02 2.98 16 36 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 38 H 0.15 2.28 8.04 -2.91 -0.02 2.25 16 Total: -1.00 -71.41 352.98 2.72 -68.69 By element: Atomic # 1 Polarization: 37.65 SS G_CDS: -0.22 Total: 37.44 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 5.19 Total: 13.92 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -3.94 Total: -103.98 kcal Atomic # 8 Polarization: -59.91 SS G_CDS: -0.26 Total: -60.17 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.17 kcal Total: -71.41 2.72 -68.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507247196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.684 kcal (2) G-P(sol) polarization free energy of solvation -71.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds