Wall clock time and date at job start Fri Apr 10 2020 18:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34802 * 117.00036 * 2 1 4 4 O 1.21562 * 119.99790 * 0.02562 * 3 2 1 5 5 C 1.47033 * 119.99982 * 179.97438 * 3 2 1 6 6 C 1.36087 * 123.44284 * 0.02562 * 5 3 2 7 7 S 1.70415 * 110.95750 * 179.72378 * 6 5 3 8 8 C 1.75498 * 92.50727 * 0.35975 * 7 6 5 9 9 N 1.39364 * 124.74599 * 179.90765 * 8 7 6 10 10 C 1.34770 * 120.00273 * 359.69501 * 9 8 7 11 11 O 1.21422 * 120.00091 * 0.02562 * 10 9 8 12 12 C 1.49267 * 120.00233 * 180.02562 * 10 9 8 13 13 O 1.21364 * 119.99709 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99981 * 180.02562 * 12 10 9 15 15 C 1.46497 * 120.00015 * 179.97438 * 14 12 10 16 16 H 1.09003 * 109.46733 * 325.00143 * 15 14 12 17 17 C 1.53000 * 109.47145 * 84.99707 * 15 14 12 18 18 C 1.50694 * 109.47115 * 204.99781 * 15 14 12 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.33624 * 110.50417 * 359.63691 * 8 7 6 27 27 H 1.08999 * 109.47235 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46683 * 299.99238 * 1 2 3 29 29 H 1.09000 * 109.47404 * 59.99524 * 1 2 3 30 30 H 1.08004 * 124.51452 * 359.97438 * 6 5 3 31 31 H 0.97005 * 119.99874 * 179.69558 * 9 8 7 32 32 H 0.97005 * 120.00104 * 359.97438 * 14 12 10 33 33 H 1.09000 * 109.47156 * 59.99824 * 17 15 14 34 34 H 1.08997 * 109.47359 * 180.02562 * 17 15 14 35 35 H 1.09007 * 109.47356 * 300.00099 * 17 15 14 36 36 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 37 37 H 1.08005 * 123.54075 * 180.30384 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2011 0.0000 4 8 1.4019 2.2206 0.0005 5 6 3.5323 1.2780 0.0006 6 6 4.3407 0.1833 0.0006 7 16 5.9830 0.6382 -0.0063 8 6 5.5889 2.3484 0.0016 9 7 6.5264 3.3795 0.0021 10 6 7.8433 3.0930 0.0025 11 8 8.2130 1.9364 0.0019 12 6 8.8475 4.1974 0.0036 13 8 8.4780 5.3535 0.0037 14 7 10.1644 3.9108 0.0035 15 6 11.1499 4.9948 0.0040 16 1 10.7714 5.8302 -0.5850 17 6 11.4000 5.4560 1.4413 18 6 12.4406 4.5005 -0.5966 19 1 12.5192 3.4808 -0.9437 20 6 13.5217 5.3498 -0.7022 21 7 13.4262 6.5914 -0.2791 22 14 15.1218 4.7369 -1.4461 23 1 16.1207 5.8357 -1.4456 24 1 15.6368 3.5987 -0.6434 25 1 14.8796 4.2893 -2.8411 26 6 4.2642 2.5235 0.0011 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 3.9883 -0.8377 0.0006 31 1 6.2311 4.3035 0.0022 32 1 10.4597 2.9868 0.0030 33 1 11.7783 4.6206 2.0303 34 1 12.1329 6.2628 1.4417 35 1 10.4664 5.8135 1.8758 36 1 14.1869 7.1888 -0.3530 37 1 3.7905 3.4941 0.0006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519803413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:39 Heat of formation + Delta-G solvation = -119.116290 kcal Electronic energy + Delta-G solvation = -23934.328124 eV Core-core repulsion = 19996.991802 eV Total energy + Delta-G solvation = -3937.336322 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.79239 -40.55449 -38.53950 -37.65046 -36.52996 -35.40980 -34.57809 -32.51480 -29.83619 -29.21755 -27.93544 -25.50151 -25.33484 -24.72396 -22.08366 -21.47828 -20.34847 -19.63752 -18.47431 -18.20996 -17.76379 -16.69872 -16.61842 -16.43104 -16.07254 -15.89881 -15.29944 -15.24531 -14.43815 -14.15103 -14.07893 -13.67364 -13.39962 -13.16818 -13.00976 -12.92622 -12.56548 -12.39539 -11.90662 -11.74024 -11.28232 -11.19160 -11.16473 -11.09755 -11.05948 -10.89818 -10.56635 -10.42506 -10.32836 -9.34159 -9.21806 -8.73797 -8.69894 -8.39870 -8.24495 -6.23301 -4.33527 0.42559 1.02203 1.15842 1.70290 1.88747 2.20711 2.63657 2.85582 3.21593 3.26841 3.28523 3.47259 3.89157 4.27267 4.64643 4.71885 4.77712 4.85299 4.91002 5.05059 5.09808 5.17209 5.32581 5.46775 5.77464 6.01247 6.05582 6.62611 6.70906 6.76393 6.93435 7.07670 7.24111 7.49063 7.50434 7.57431 7.72512 7.97421 8.28766 8.47964 8.74988 9.33705 10.82625 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.037486 B = 0.002183 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.764887 B =12821.283907 C =13313.100976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.530 3.470 4 O -0.507 6.507 5 C -0.132 4.132 6 C -0.238 4.238 7 S 0.328 5.672 8 C 0.015 3.985 9 N -0.612 5.612 10 C 0.502 3.498 11 O -0.496 6.496 12 C 0.500 3.500 13 O -0.530 6.530 14 N -0.663 5.663 15 C 0.262 3.738 16 H 0.056 0.944 17 C -0.149 4.149 18 C -0.539 4.539 19 H 0.065 0.935 20 C 0.068 3.932 21 N -0.882 5.882 22 Si 0.906 3.094 23 H -0.285 1.285 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.138 4.138 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.179 0.821 31 H 0.432 0.568 32 H 0.403 0.597 33 H 0.031 0.969 34 H 0.095 0.905 35 H 0.017 0.983 36 H 0.267 0.733 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.640 -13.496 1.305 23.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.273 6.273 3 C 0.373 3.627 4 O -0.396 6.396 5 C -0.149 4.149 6 C -0.377 4.377 7 S 0.591 5.409 8 C -0.198 4.198 9 N -0.259 5.259 10 C 0.285 3.715 11 O -0.371 6.371 12 C 0.278 3.722 13 O -0.408 6.408 14 N -0.312 5.312 15 C 0.161 3.839 16 H 0.073 0.927 17 C -0.208 4.208 18 C -0.577 4.577 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.519 5.519 22 Si 0.733 3.267 23 H -0.211 1.211 24 H -0.200 1.200 25 H -0.201 1.201 26 C -0.169 4.169 27 H 0.120 0.880 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.196 0.804 31 H 0.272 0.728 32 H 0.238 0.762 33 H 0.050 0.950 34 H 0.114 0.886 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -18.257 -13.732 1.313 22.882 hybrid contribution -0.921 0.616 -0.354 1.163 sum -19.178 -13.116 0.959 23.254 Atomic orbital electron populations 1.23277 0.75934 1.03724 1.02707 1.86552 1.23542 1.32645 1.84582 1.20483 0.88248 0.81352 0.72604 1.90856 1.66756 1.35949 1.46042 1.18748 0.89774 0.92676 1.13672 1.26522 1.02366 1.03725 1.05065 1.84355 0.97600 0.92372 1.66561 1.21961 0.91960 0.95606 1.10285 1.42642 1.03999 1.09465 1.69745 1.21295 0.83221 0.90707 0.76325 1.90646 1.78657 1.20978 1.46786 1.19326 0.84309 0.87713 0.80867 1.90764 1.79783 1.19919 1.50362 1.46534 1.04104 1.13178 1.67405 1.19028 0.85137 0.85024 0.94700 0.92664 1.22109 0.99958 1.01932 0.96767 1.21128 0.95971 0.98589 1.42023 0.91725 1.24883 0.98990 0.94721 0.94983 1.69878 1.31612 1.05008 1.45432 0.86429 0.82163 0.78381 0.79707 1.21067 1.20017 1.20065 1.20613 0.89921 0.98801 1.07603 0.87977 0.91786 0.91789 0.80366 0.72769 0.76182 0.95003 0.88613 0.96428 0.92312 0.82511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.57 101.05 1.07 1.31 16 2 O -0.36 -3.45 10.21 -40.77 -0.42 -3.86 16 3 C 0.53 6.24 7.92 34.30 0.27 6.51 16 4 O -0.51 -7.15 16.59 -19.31 -0.32 -7.47 16 5 C -0.13 -1.48 5.98 -104.66 -0.63 -2.10 16 6 C -0.24 -2.24 10.54 29.96 0.32 -1.92 16 7 S 0.33 3.50 20.05 -107.50 -2.16 1.35 16 8 C 0.01 0.18 7.10 -15.74 -0.11 0.07 16 9 N -0.61 -7.88 5.41 -11.48 -0.06 -7.94 16 10 C 0.50 7.73 7.85 -11.67 -0.09 7.63 16 11 O -0.50 -7.83 13.94 5.43 0.08 -7.75 16 12 C 0.50 9.31 7.85 -11.67 -0.09 9.22 16 13 O -0.53 -11.04 16.14 5.48 0.09 -10.95 16 14 N -0.66 -13.31 5.06 -55.43 -0.28 -13.59 16 15 C 0.26 6.30 2.56 -69.09 -0.18 6.12 16 16 H 0.06 1.50 7.58 -51.93 -0.39 1.11 16 17 C -0.15 -3.49 9.26 37.16 0.34 -3.15 16 18 C -0.54 -13.70 8.73 -34.44 -0.30 -14.00 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 20 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 21 N -0.88 -23.80 11.32 55.43 0.63 -23.17 16 22 Si 0.91 20.02 29.54 -169.99 -5.02 15.00 16 23 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 26 C -0.14 -1.58 10.11 -38.75 -0.39 -1.97 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.18 1.25 8.01 -52.48 -0.42 0.83 16 31 H 0.43 4.98 8.27 -40.82 -0.34 4.64 16 32 H 0.40 7.42 8.01 -40.82 -0.33 7.09 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 37 H 0.16 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -30.01 346.07 -6.00 -36.02 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -3.87 Total: 7.77 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 0.12 Total: 9.38 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.28 Total: -44.70 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.57 Total: -30.03 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -2.16 Total: 1.35 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.01 -6.00 -36.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519803413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.098 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds