Wall clock time and date at job start Fri Apr 10 2020 18:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34802 * 117.00036 * 2 1 4 4 O 1.21562 * 119.99790 * 0.02562 * 3 2 1 5 5 C 1.47033 * 119.99982 * 179.97438 * 3 2 1 6 6 C 1.36087 * 123.44284 * 0.02562 * 5 3 2 7 7 S 1.70415 * 110.95750 * 179.72378 * 6 5 3 8 8 C 1.75498 * 92.50727 * 0.35975 * 7 6 5 9 9 N 1.39364 * 124.74599 * 179.90765 * 8 7 6 10 10 C 1.34770 * 120.00273 * 359.69501 * 9 8 7 11 11 O 1.21422 * 120.00091 * 0.02562 * 10 9 8 12 12 C 1.49267 * 120.00233 * 180.02562 * 10 9 8 13 13 O 1.21364 * 119.99709 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99981 * 180.02562 * 12 10 9 15 15 C 1.46497 * 120.00015 * 179.97438 * 14 12 10 16 16 H 1.09003 * 109.46733 * 325.00143 * 15 14 12 17 17 C 1.53000 * 109.47145 * 84.99707 * 15 14 12 18 18 C 1.50694 * 109.47115 * 204.99781 * 15 14 12 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.33624 * 110.50417 * 359.63691 * 8 7 6 27 27 H 1.08999 * 109.47235 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46683 * 299.99238 * 1 2 3 29 29 H 1.09000 * 109.47404 * 59.99524 * 1 2 3 30 30 H 1.08004 * 124.51452 * 359.97438 * 6 5 3 31 31 H 0.97005 * 119.99874 * 179.69558 * 9 8 7 32 32 H 0.97005 * 120.00104 * 359.97438 * 14 12 10 33 33 H 1.09000 * 109.47156 * 59.99824 * 17 15 14 34 34 H 1.08997 * 109.47359 * 180.02562 * 17 15 14 35 35 H 1.09007 * 109.47356 * 300.00099 * 17 15 14 36 36 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 37 37 H 1.08005 * 123.54075 * 180.30384 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2011 0.0000 4 8 1.4019 2.2206 0.0005 5 6 3.5323 1.2780 0.0006 6 6 4.3407 0.1833 0.0006 7 16 5.9830 0.6382 -0.0063 8 6 5.5889 2.3484 0.0016 9 7 6.5264 3.3795 0.0021 10 6 7.8433 3.0930 0.0025 11 8 8.2130 1.9364 0.0019 12 6 8.8475 4.1974 0.0036 13 8 8.4780 5.3535 0.0037 14 7 10.1644 3.9108 0.0035 15 6 11.1499 4.9948 0.0040 16 1 10.7714 5.8302 -0.5850 17 6 11.4000 5.4560 1.4413 18 6 12.4406 4.5005 -0.5966 19 1 12.5192 3.4808 -0.9437 20 6 13.5217 5.3498 -0.7022 21 7 13.4262 6.5914 -0.2791 22 14 15.1218 4.7369 -1.4461 23 1 16.1207 5.8357 -1.4456 24 1 15.6368 3.5987 -0.6434 25 1 14.8796 4.2893 -2.8411 26 6 4.2642 2.5235 0.0011 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 3.9883 -0.8377 0.0006 31 1 6.2311 4.3035 0.0022 32 1 10.4597 2.9868 0.0030 33 1 11.7783 4.6206 2.0303 34 1 12.1329 6.2628 1.4417 35 1 10.4664 5.8135 1.8758 36 1 14.1869 7.1888 -0.3530 37 1 3.7905 3.4941 0.0006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519803413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:39 Heat of formation + Delta-G solvation = -139.699624 kcal Electronic energy + Delta-G solvation = -23935.220685 eV Core-core repulsion = 19996.991802 eV Total energy + Delta-G solvation = -3938.228883 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.04621 -41.43396 -39.97444 -38.61705 -37.41159 -37.02348 -35.79982 -34.34709 -31.20237 -30.59037 -28.60639 -27.37525 -26.51656 -25.79817 -23.28237 -22.72172 -21.70548 -20.98344 -19.75999 -19.26165 -18.61412 -18.10849 -17.71543 -17.41470 -17.31485 -17.16710 -16.95328 -16.34140 -16.01315 -15.48127 -15.06691 -14.83666 -14.57551 -14.44143 -14.01847 -13.93085 -13.82406 -13.73361 -13.10336 -13.00121 -12.96346 -12.89867 -12.73920 -12.29795 -12.21740 -12.13841 -12.12702 -11.81675 -11.49914 -11.16916 -10.77268 -10.61429 -10.02056 -9.60164 -9.32395 -8.19552 -6.36795 -0.46838 0.03472 0.15015 0.79880 0.80766 1.11739 1.47979 1.48779 1.56804 1.78012 1.93385 2.10744 2.39043 2.63836 3.11587 3.40337 3.87955 3.94318 4.18614 4.31227 4.35065 4.40135 4.60169 4.70131 4.72604 4.88402 4.90789 5.01393 5.06213 5.26485 5.28395 5.40196 5.57343 5.67605 5.81638 6.03691 6.28926 6.61634 6.66166 6.68275 7.02976 7.35222 8.86223 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.037486 B = 0.002183 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.764887 B =12821.283907 C =13313.100976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.532 3.468 4 O -0.539 6.539 5 C -0.157 4.157 6 C -0.206 4.206 7 S 0.337 5.663 8 C -0.011 4.011 9 N -0.599 5.599 10 C 0.513 3.487 11 O -0.500 6.500 12 C 0.502 3.498 13 O -0.555 6.555 14 N -0.666 5.666 15 C 0.268 3.732 16 H 0.016 0.984 17 C -0.137 4.137 18 C -0.552 4.552 19 H 0.073 0.927 20 C 0.019 3.981 21 N -0.913 5.913 22 Si 0.972 3.028 23 H -0.285 1.285 24 H -0.266 1.266 25 H -0.272 1.272 26 C -0.128 4.128 27 H 0.136 0.864 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.208 0.792 31 H 0.437 0.563 32 H 0.413 0.587 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.020 0.980 36 H 0.267 0.733 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.324 -16.032 1.149 25.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.377 3.623 4 O -0.431 6.431 5 C -0.173 4.173 6 C -0.345 4.345 7 S 0.600 5.400 8 C -0.223 4.223 9 N -0.246 5.246 10 C 0.295 3.705 11 O -0.376 6.376 12 C 0.281 3.719 13 O -0.434 6.434 14 N -0.315 5.315 15 C 0.166 3.834 16 H 0.034 0.966 17 C -0.196 4.196 18 C -0.590 4.590 19 H 0.091 0.909 20 C -0.182 4.182 21 N -0.550 5.550 22 Si 0.796 3.204 23 H -0.211 1.211 24 H -0.190 1.190 25 H -0.197 1.197 26 C -0.159 4.159 27 H 0.154 0.846 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.278 0.722 32 H 0.249 0.751 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.040 0.960 36 H 0.077 0.923 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -18.988 -16.313 1.159 25.060 hybrid contribution -0.887 1.336 -0.303 1.632 sum -19.875 -14.977 0.856 24.901 Atomic orbital electron populations 1.23602 0.74160 1.05972 1.02637 1.86537 1.25266 1.31345 1.83988 1.20572 0.88395 0.81523 0.71825 1.90841 1.67412 1.37032 1.47807 1.18802 0.89908 0.92999 1.15547 1.26781 1.01277 1.04624 1.01826 1.84363 0.98220 0.91323 1.66067 1.22062 0.91860 0.95957 1.12418 1.42408 1.03205 1.10192 1.68792 1.20362 0.83440 0.89394 0.77313 1.90654 1.78947 1.20462 1.47527 1.19773 0.84367 0.88313 0.79448 1.90748 1.80243 1.21453 1.51000 1.46244 1.04347 1.12693 1.68233 1.18643 0.85582 0.84992 0.94214 0.96612 1.21937 0.99462 1.01467 0.96733 1.21453 0.96506 0.99013 1.41998 0.90892 1.25731 1.02267 0.94824 0.95349 1.70013 1.32476 1.06104 1.46434 0.85400 0.78100 0.77919 0.78955 1.21099 1.19032 1.19665 1.20740 0.89796 0.99404 1.05991 0.84572 0.91898 0.91918 0.77537 0.72198 0.75072 0.93972 0.90856 0.96048 0.92350 0.82274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.57 113.37 1.20 1.52 16 2 O -0.36 -6.08 10.21 -57.13 -0.58 -6.66 16 3 C 0.53 11.78 7.92 70.13 0.56 12.34 16 4 O -0.54 -14.90 16.59 19.63 0.33 -14.57 16 5 C -0.16 -3.22 5.98 -19.89 -0.12 -3.34 16 6 C -0.21 -3.30 10.54 67.32 0.71 -2.59 16 7 S 0.34 6.46 20.05 -56.49 -1.13 5.32 16 8 C -0.01 -0.25 7.10 82.45 0.59 0.33 16 9 N -0.60 -14.94 5.41 -308.57 -1.67 -16.61 16 10 C 0.51 15.40 7.85 87.21 0.68 16.09 16 11 O -0.50 -15.11 13.94 -3.47 -0.05 -15.16 16 12 C 0.50 18.73 7.85 87.21 0.68 19.41 16 13 O -0.55 -23.53 16.14 -3.29 -0.05 -23.58 16 14 N -0.67 -26.78 5.06 -447.63 -2.27 -29.05 16 15 C 0.27 13.14 2.56 44.24 0.11 13.25 16 16 H 0.02 0.90 7.58 -2.39 -0.02 0.89 16 17 C -0.14 -6.53 9.26 71.98 0.67 -5.87 16 18 C -0.55 -28.09 8.73 25.60 0.22 -27.87 16 19 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 20 C 0.02 0.99 5.30 84.66 0.45 1.44 16 21 N -0.91 -50.03 11.32 21.45 0.24 -49.79 16 22 Si 0.97 40.75 29.54 68.60 2.03 42.77 16 23 H -0.29 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 C -0.13 -2.77 10.11 22.81 0.23 -2.54 16 27 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.21 2.07 8.01 -2.91 -0.02 2.04 16 31 H 0.44 9.90 8.27 -92.70 -0.77 9.13 16 32 H 0.41 14.96 8.01 -92.70 -0.74 14.22 16 33 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 35 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 37 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -64.51 346.07 2.47 -62.04 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -0.36 Total: 23.11 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: 5.98 Total: 22.17 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -3.69 Total: -95.45 kcal Atomic # 8 Polarization: -59.62 SS G_CDS: -0.36 Total: -59.98 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Atomic # 16 Polarization: 6.46 SS G_CDS: -1.13 Total: 5.32 kcal Total: -64.51 2.47 -62.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519803413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.655 kcal (2) G-P(sol) polarization free energy of solvation -64.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds