Wall clock time and date at job start Fri Apr 10 2020 18:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00367 * 2 1 4 4 H 1.48499 * 109.47047 * 269.99658 * 3 2 1 5 5 H 1.48499 * 109.47223 * 29.99742 * 3 2 1 6 6 H 1.48506 * 109.47190 * 150.00083 * 3 2 1 7 7 C 1.37879 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00293 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99853 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47129 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.46979 * 179.97438 * 10 9 7 12 12 O 1.42094 * 110.54411 * 68.37833 * 11 10 9 13 13 O 1.42098 * 110.54443 * 291.62635 * 11 10 9 14 14 N 1.65601 * 104.44791 * 180.02562 * 11 10 9 15 15 C 1.46496 * 120.00320 * 65.00382 * 14 11 10 16 16 C 1.50701 * 109.47764 * 165.00054 * 15 14 11 17 17 O 1.21281 * 119.99217 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00138 * 179.97438 * 16 15 14 19 19 C 1.46497 * 119.99546 * 179.97438 * 18 16 15 20 20 C 1.50707 * 109.47012 * 180.02562 * 19 18 16 21 21 C 1.38238 * 119.99792 * 90.00154 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.98090 * 20 19 18 26 26 H 0.96999 * 119.99684 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47218 * 60.00443 * 9 7 2 28 28 H 1.08998 * 109.47537 * 299.99813 * 9 7 2 29 29 H 1.09007 * 109.47062 * 60.00373 * 10 9 7 30 30 H 1.08994 * 109.47498 * 299.99916 * 10 9 7 31 31 H 0.97004 * 119.99760 * 244.99978 * 14 11 10 32 32 H 1.09000 * 109.47339 * 44.99197 * 15 14 11 33 33 H 1.09004 * 109.46854 * 284.99924 * 15 14 11 34 34 H 0.96998 * 120.00430 * 0.02562 * 18 16 15 35 35 H 1.09005 * 109.47643 * 60.00506 * 19 18 16 36 36 H 1.09000 * 109.47513 * 299.99670 * 19 18 16 37 37 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 38 38 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 41 41 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3380 -5.2330 0.0013 12 8 0.6636 -5.4200 -1.2354 13 8 0.6644 -5.4193 1.2385 14 7 2.5201 -6.3928 0.0020 15 6 3.4184 -6.5225 1.1519 16 6 4.1385 -7.8444 1.0804 17 8 3.9221 -8.6037 0.1597 18 7 5.0227 -8.1829 2.0395 19 6 5.7222 -9.4682 1.9702 20 6 6.6464 -9.6016 3.1532 21 6 6.1904 -10.1756 4.3252 22 6 7.0383 -10.2984 5.4101 23 6 8.3422 -9.8478 5.3227 24 6 8.7966 -9.2691 4.1525 25 6 7.9501 -9.1505 3.0661 26 1 -0.4849 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6239 -2.5567 0.8903 29 1 2.8718 -3.6045 0.8906 30 1 2.8718 -3.6045 -0.8894 31 1 2.6177 -6.9862 -0.7591 32 1 2.8383 -6.4741 2.0734 33 1 4.1462 -5.7112 1.1377 34 1 5.1955 -7.5758 2.7761 35 1 6.3020 -9.5172 1.0485 36 1 4.9942 -10.2794 1.9852 37 1 5.1717 -10.5280 4.3933 38 1 6.6819 -10.7464 6.3259 39 1 9.0047 -9.9442 6.1702 40 1 9.8140 -8.9131 4.0857 41 1 8.3065 -8.7028 2.1502 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732216801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:52 Heat of formation + Delta-G solvation = -94.006143 kcal Electronic energy + Delta-G solvation = -24102.784844 eV Core-core repulsion = 20302.370474 eV Total energy + Delta-G solvation = -3800.414370 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.29636 -39.39929 -36.60891 -35.53585 -35.41473 -34.57427 -33.90852 -31.90454 -31.37299 -31.17967 -28.00160 -25.61958 -25.57996 -23.05235 -21.79320 -21.69505 -20.96205 -19.09007 -18.16539 -17.45366 -16.92547 -16.60811 -16.25211 -16.08850 -15.67389 -15.56112 -15.22465 -15.19591 -14.61793 -14.51571 -13.94478 -13.77169 -13.48308 -13.40921 -13.29752 -12.99456 -12.65192 -12.49834 -11.77152 -11.72201 -11.60228 -11.54938 -11.52128 -11.50282 -11.09670 -10.97788 -10.44480 -10.40644 -10.32442 -9.85537 -9.58620 -9.46605 -9.38380 -9.29714 -9.06167 -8.51656 -6.13730 -4.19430 0.70505 0.79324 0.92692 2.32674 2.74317 3.16586 3.25072 3.31397 3.33621 3.43155 4.15838 4.24419 4.36640 4.38136 4.42737 4.54479 4.66949 4.68178 4.87782 5.01268 5.03362 5.12166 5.21531 5.23573 5.24842 5.47104 5.51322 5.57292 5.63190 5.81522 5.95990 6.00393 6.04644 6.10089 6.46098 6.49919 7.02066 7.19587 7.29016 7.35258 7.79023 7.86345 8.15895 8.83962 9.45376 10.97256 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.014433 B = 0.002328 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.469465 B =12022.201448 C =13347.873349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.590 4.590 11 S 2.596 3.404 12 O -0.961 6.961 13 O -0.967 6.967 14 N -1.117 6.117 15 C 0.098 3.902 16 C 0.515 3.485 17 O -0.530 6.530 18 N -0.727 5.727 19 C 0.161 3.839 20 C -0.110 4.110 21 C -0.100 4.100 22 C -0.122 4.122 23 C -0.113 4.113 24 C -0.122 4.122 25 C -0.100 4.100 26 H 0.265 0.735 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.422 0.578 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.405 0.595 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.818 -19.804 10.041 28.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.723 4.723 11 S 2.694 3.306 12 O -0.951 6.951 13 O -0.956 6.956 14 N -0.877 5.877 15 C -0.033 4.033 16 C 0.300 3.700 17 O -0.406 6.406 18 N -0.380 5.380 19 C 0.038 3.962 20 C -0.111 4.111 21 C -0.118 4.118 22 C -0.140 4.140 23 C -0.131 4.131 24 C -0.140 4.140 25 C -0.118 4.118 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.259 0.741 32 H 0.129 0.871 33 H 0.115 0.885 34 H 0.240 0.760 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 16.529 -20.361 9.513 27.898 hybrid contribution 1.314 1.262 0.138 1.827 sum 17.843 -19.099 9.651 27.862 Atomic orbital electron populations 1.69952 1.06110 1.27214 1.49495 1.25073 0.94978 0.99554 0.94922 0.86466 0.79668 0.82873 0.78236 1.20482 1.21026 1.19786 1.20994 0.93038 0.89759 1.52214 0.92047 1.18974 0.92706 0.90496 0.99004 1.30467 1.13770 1.17976 1.10122 1.05531 0.74495 0.76401 0.74209 1.93567 1.71195 1.85230 1.45144 1.93536 1.71340 1.84993 1.45769 1.55678 1.52331 1.52786 1.26933 1.21033 0.94661 0.95751 0.91816 1.20617 0.79057 0.88480 0.81800 1.90707 1.63808 1.52264 1.33787 1.45994 1.43571 1.20732 1.27735 1.20196 0.93938 0.86120 0.95925 1.19884 0.94819 1.01006 0.95365 1.21156 0.99911 0.98270 0.92497 1.21203 0.93967 1.00107 0.98723 1.21259 0.96002 0.97867 0.97946 1.21202 0.99960 0.99547 0.93311 1.21146 0.93122 0.98622 0.98952 0.92513 0.94753 0.94732 0.86311 0.85929 0.74147 0.87092 0.88470 0.75979 0.90395 0.90417 0.85689 0.85781 0.85924 0.85787 0.85710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.52 -14.10 9.11 -34.44 -0.31 -14.41 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 10 C -0.59 -10.72 6.01 37.16 0.22 -10.49 16 11 S 2.60 45.46 5.46 -107.50 -0.59 44.87 16 12 O -0.96 -20.15 18.08 -57.54 -1.04 -21.19 16 13 O -0.97 -19.37 17.49 -57.54 -1.01 -20.38 16 14 N -1.12 -15.18 5.82 -11.66 -0.07 -15.25 16 15 C 0.10 1.02 6.61 -5.20 -0.03 0.99 16 16 C 0.52 5.60 7.90 -10.99 -0.09 5.51 16 17 O -0.53 -7.69 15.73 5.56 0.09 -7.60 16 18 N -0.73 -5.59 5.55 -61.47 -0.34 -5.94 16 19 C 0.16 1.20 5.80 -5.19 -0.03 1.17 16 20 C -0.11 -0.72 5.25 -104.62 -0.55 -1.27 16 21 C -0.10 -0.63 9.70 -39.58 -0.38 -1.01 16 22 C -0.12 -0.70 10.05 -39.58 -0.40 -1.10 16 23 C -0.11 -0.63 10.05 -39.58 -0.40 -1.02 16 24 C -0.12 -0.70 10.05 -39.58 -0.40 -1.10 16 25 C -0.10 -0.62 9.70 -39.58 -0.38 -1.00 16 26 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.12 1.83 8.14 -51.92 -0.42 1.41 16 30 H 0.12 2.02 8.14 -51.93 -0.42 1.59 16 31 H 0.42 5.75 7.67 -34.47 -0.26 5.49 16 32 H 0.11 1.06 7.69 -51.93 -0.40 0.66 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.41 2.20 8.46 -40.82 -0.35 1.86 16 35 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 36 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 37 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 38 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 39 H 0.12 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.12 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 369.98 15.07 5.58 5.58 Total: -1.00 -37.33 369.98 -10.27 -47.60 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.62 Total: 3.58 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -2.99 Total: -21.70 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.33 Total: -46.65 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -1.96 Total: -49.16 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 45.46 SS G_CDS: -0.59 Total: 44.87 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.33 -10.27 -47.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732216801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.407 kcal (2) G-P(sol) polarization free energy of solvation -37.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds