Wall clock time and date at job start Fri Apr 10 2020 18:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00367 * 2 1 4 4 H 1.48499 * 109.47047 * 269.99658 * 3 2 1 5 5 H 1.48499 * 109.47223 * 29.99742 * 3 2 1 6 6 H 1.48506 * 109.47190 * 150.00083 * 3 2 1 7 7 C 1.37879 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00293 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99853 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47129 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.46979 * 179.97438 * 10 9 7 12 12 O 1.42094 * 110.54411 * 68.37833 * 11 10 9 13 13 O 1.42098 * 110.54443 * 291.62635 * 11 10 9 14 14 N 1.65601 * 104.44791 * 180.02562 * 11 10 9 15 15 C 1.46496 * 120.00320 * 65.00382 * 14 11 10 16 16 C 1.50701 * 109.47764 * 165.00054 * 15 14 11 17 17 O 1.21281 * 119.99217 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00138 * 179.97438 * 16 15 14 19 19 C 1.46497 * 119.99546 * 179.97438 * 18 16 15 20 20 C 1.50707 * 109.47012 * 180.02562 * 19 18 16 21 21 C 1.38238 * 119.99792 * 90.00154 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.98090 * 20 19 18 26 26 H 0.96999 * 119.99684 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47218 * 60.00443 * 9 7 2 28 28 H 1.08998 * 109.47537 * 299.99813 * 9 7 2 29 29 H 1.09007 * 109.47062 * 60.00373 * 10 9 7 30 30 H 1.08994 * 109.47498 * 299.99916 * 10 9 7 31 31 H 0.97004 * 119.99760 * 244.99978 * 14 11 10 32 32 H 1.09000 * 109.47339 * 44.99197 * 15 14 11 33 33 H 1.09004 * 109.46854 * 284.99924 * 15 14 11 34 34 H 0.96998 * 120.00430 * 0.02562 * 18 16 15 35 35 H 1.09005 * 109.47643 * 60.00506 * 19 18 16 36 36 H 1.09000 * 109.47513 * 299.99670 * 19 18 16 37 37 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 38 38 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 41 41 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3380 -5.2330 0.0013 12 8 0.6636 -5.4200 -1.2354 13 8 0.6644 -5.4193 1.2385 14 7 2.5201 -6.3928 0.0020 15 6 3.4184 -6.5225 1.1519 16 6 4.1385 -7.8444 1.0804 17 8 3.9221 -8.6037 0.1597 18 7 5.0227 -8.1829 2.0395 19 6 5.7222 -9.4682 1.9702 20 6 6.6464 -9.6016 3.1532 21 6 6.1904 -10.1756 4.3252 22 6 7.0383 -10.2984 5.4101 23 6 8.3422 -9.8478 5.3227 24 6 8.7966 -9.2691 4.1525 25 6 7.9501 -9.1505 3.0661 26 1 -0.4849 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6239 -2.5567 0.8903 29 1 2.8718 -3.6045 0.8906 30 1 2.8718 -3.6045 -0.8894 31 1 2.6177 -6.9862 -0.7591 32 1 2.8383 -6.4741 2.0734 33 1 4.1462 -5.7112 1.1377 34 1 5.1955 -7.5758 2.7761 35 1 6.3020 -9.5172 1.0485 36 1 4.9942 -10.2794 1.9852 37 1 5.1717 -10.5280 4.3933 38 1 6.6819 -10.7464 6.3259 39 1 9.0047 -9.9442 6.1702 40 1 9.8140 -8.9131 4.0857 41 1 8.3065 -8.7028 2.1502 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732216801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:51 Heat of formation + Delta-G solvation = -122.923166 kcal Electronic energy + Delta-G solvation = -24104.038780 eV Core-core repulsion = 20302.370474 eV Total energy + Delta-G solvation = -3801.668306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.02707 -39.96380 -38.15330 -37.01013 -36.22539 -35.85610 -35.59423 -33.08803 -32.47190 -31.78699 -28.78943 -27.55610 -26.26880 -23.56191 -23.47191 -22.27154 -21.77617 -20.37343 -19.31359 -18.79600 -18.05120 -17.53965 -17.34889 -17.06175 -16.73627 -16.67694 -16.48542 -15.96942 -15.91958 -15.57625 -15.06739 -14.55176 -14.45527 -14.32667 -14.17946 -13.87897 -13.68978 -13.46439 -13.41840 -13.18978 -13.12797 -13.06818 -12.90582 -12.74479 -12.20065 -12.10396 -12.00618 -11.91134 -11.70816 -11.22774 -11.17476 -10.61635 -10.47853 -10.17811 -9.82211 -9.75999 -8.22863 -6.36324 -0.69476 0.30219 0.50017 1.43743 1.45186 1.49860 1.56098 1.74961 2.22661 2.40744 2.84747 2.94065 3.11081 3.30267 3.60510 3.68033 3.93704 4.04608 4.15953 4.18043 4.29326 4.31097 4.33842 4.40565 4.56881 4.61361 4.73295 4.78662 4.82199 5.07177 5.16609 5.30014 5.32421 5.33977 5.55379 5.63459 5.64710 5.72227 5.99038 6.08807 6.09794 6.45417 6.78038 7.11101 7.33771 8.89326 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.014433 B = 0.002328 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.469465 B =12022.201448 C =13347.873349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.006 4.006 3 Si 0.973 3.027 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.535 4.535 8 H 0.079 0.921 9 C 0.018 3.982 10 C -0.583 4.583 11 S 2.625 3.375 12 O -1.000 7.000 13 O -0.993 6.993 14 N -1.107 6.107 15 C 0.084 3.916 16 C 0.517 3.483 17 O -0.572 6.572 18 N -0.709 5.709 19 C 0.164 3.836 20 C -0.116 4.116 21 C -0.110 4.110 22 C -0.130 4.130 23 C -0.118 4.118 24 C -0.129 4.129 25 C -0.108 4.108 26 H 0.266 0.734 27 H 0.004 0.996 28 H 0.011 0.989 29 H 0.154 0.846 30 H 0.144 0.856 31 H 0.424 0.576 32 H 0.123 0.877 33 H 0.137 0.863 34 H 0.419 0.581 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.129 0.871 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.733 -19.574 11.258 30.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.797 3.203 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.178 1.178 7 C -0.574 4.574 8 H 0.097 0.903 9 C -0.021 4.021 10 C -0.716 4.716 11 S 2.722 3.278 12 O -0.991 6.991 13 O -0.983 6.983 14 N -0.870 5.870 15 C -0.045 4.045 16 C 0.302 3.698 17 O -0.452 6.452 18 N -0.363 5.363 19 C 0.041 3.959 20 C -0.116 4.116 21 C -0.128 4.128 22 C -0.148 4.148 23 C -0.136 4.136 24 C -0.147 4.147 25 C -0.126 4.126 26 H 0.075 0.925 27 H 0.022 0.978 28 H 0.029 0.971 29 H 0.172 0.828 30 H 0.163 0.837 31 H 0.262 0.738 32 H 0.141 0.859 33 H 0.155 0.845 34 H 0.256 0.744 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.147 0.853 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 19.479 -20.131 10.770 30.012 hybrid contribution 0.467 1.092 -0.174 1.200 sum 19.946 -19.040 10.596 29.541 Atomic orbital electron populations 1.70105 1.08093 1.28221 1.51071 1.26119 0.95829 1.03895 0.94575 0.85322 0.78753 0.77764 0.78458 1.19953 1.21103 1.17837 1.21533 0.94093 0.90650 1.51150 0.90287 1.18850 0.93717 0.93054 0.96521 1.30321 1.12760 1.15515 1.13017 1.04399 0.74348 0.76343 0.72674 1.93509 1.72845 1.85889 1.46819 1.93498 1.72535 1.85496 1.46774 1.55215 1.52229 1.51395 1.28123 1.21468 0.95167 0.96980 0.90866 1.20673 0.79208 0.88205 0.81688 1.90697 1.65396 1.53449 1.35613 1.45883 1.42280 1.20946 1.27155 1.20165 0.93815 0.85595 0.96359 1.19796 0.94900 1.01853 0.95062 1.21299 1.00395 0.98455 0.92695 1.21449 0.94137 1.00060 0.99141 1.21555 0.96224 0.97299 0.98540 1.21462 1.00709 0.99378 0.93179 1.21302 0.93039 0.98708 0.99552 0.92512 0.97760 0.97101 0.82813 0.83738 0.73828 0.85890 0.84509 0.74418 0.90752 0.91202 0.85292 0.84355 0.84181 0.84221 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.21 13.29 21.45 0.28 -55.92 16 2 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 3 Si 0.97 42.33 29.54 68.60 2.03 44.36 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.54 -28.61 9.11 25.60 0.23 -28.37 16 8 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 9 C 0.02 0.88 4.98 29.85 0.15 1.03 16 10 C -0.58 -20.19 6.01 71.98 0.43 -19.76 16 11 S 2.63 90.36 5.46 -56.49 -0.31 90.05 16 12 O -1.00 -42.46 18.08 -127.65 -2.31 -44.77 16 13 O -0.99 -39.46 17.49 -127.65 -2.23 -41.69 16 14 N -1.11 -28.33 5.82 -190.79 -1.11 -29.44 16 15 C 0.08 1.54 6.61 85.63 0.57 2.10 16 16 C 0.52 10.36 7.90 87.66 0.69 11.05 16 17 O -0.57 -16.22 15.73 -3.03 -0.05 -16.27 16 18 N -0.71 -9.64 5.55 -466.78 -2.59 -12.23 16 19 C 0.16 2.28 5.80 85.64 0.50 2.78 16 20 C -0.12 -1.37 5.25 -19.86 -0.10 -1.47 16 21 C -0.11 -1.24 9.70 22.27 0.22 -1.03 16 22 C -0.13 -1.28 10.05 22.27 0.22 -1.06 16 23 C -0.12 -1.07 10.05 22.27 0.22 -0.85 16 24 C -0.13 -1.22 10.05 22.27 0.22 -1.00 16 25 C -0.11 -1.15 9.70 22.27 0.22 -0.94 16 26 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 27 H 0.00 0.22 8.14 -2.39 -0.02 0.21 16 28 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.15 4.20 8.14 -2.39 -0.02 4.18 16 30 H 0.14 4.38 8.14 -2.39 -0.02 4.36 16 31 H 0.42 11.14 7.67 -96.74 -0.74 10.40 16 32 H 0.12 2.00 7.69 -2.39 -0.02 1.98 16 33 H 0.14 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.42 3.51 8.46 -92.71 -0.78 2.72 16 35 H 0.07 1.11 8.09 -2.38 -0.02 1.09 16 36 H 0.07 1.10 8.08 -2.39 -0.02 1.08 16 37 H 0.13 1.27 8.06 -2.91 -0.02 1.24 16 38 H 0.14 0.88 8.06 -2.91 -0.02 0.86 16 39 H 0.14 0.71 8.06 -2.91 -0.02 0.69 16 40 H 0.14 0.81 8.06 -2.91 -0.02 0.78 16 41 H 0.13 1.14 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -81.89 369.98 -2.72 -84.61 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -0.47 Total: 18.68 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 4.03 Total: -37.38 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -3.42 Total: -97.59 kcal Atomic # 8 Polarization: -98.15 SS G_CDS: -4.59 Total: -102.74 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 90.36 SS G_CDS: -0.31 Total: 90.05 kcal Total: -81.89 -2.72 -84.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732216801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.309 kcal (2) G-P(sol) polarization free energy of solvation -81.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds