Wall clock time and date at job start Fri Apr 10 2020 18:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46752 * 2 1 4 4 C 1.50689 * 109.47390 * 239.99822 * 2 1 3 5 5 H 1.08004 * 120.00194 * 239.99805 * 4 2 1 6 6 C 1.37874 * 120.00122 * 59.99885 * 4 2 1 7 7 N 1.31508 * 120.00301 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99944 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47095 * 89.99839 * 8 6 4 10 10 H 1.48500 * 109.47077 * 209.99935 * 8 6 4 11 11 H 1.48498 * 109.47034 * 329.99955 * 8 6 4 12 12 O 1.45196 * 109.47285 * 119.99172 * 2 1 3 13 13 C 1.34804 * 117.00659 * 270.00793 * 12 2 1 14 14 O 1.21563 * 119.99661 * 359.97438 * 13 12 2 15 15 C 1.47121 * 120.00678 * 179.72432 * 13 12 2 16 16 C 1.37381 * 120.55872 * 179.97438 * 15 13 12 17 17 N 1.35919 * 121.62118 * 179.70825 * 16 15 13 18 18 C 1.46667 * 115.62933 * 183.18486 * 17 16 15 19 19 C 1.53132 * 110.51323 * 216.93061 * 18 17 16 20 20 S 1.82059 * 107.04505 * 302.23924 * 19 18 17 21 21 O 1.42093 * 110.78172 * 161.70854 * 20 19 18 22 22 O 1.42102 * 110.77900 * 299.24720 * 20 19 18 23 23 N 1.65355 * 102.76743 * 50.50258 * 20 19 18 24 24 C 1.31299 * 122.52858 * 336.35722 * 23 20 19 25 25 C 1.42860 * 114.92784 * 180.10080 * 24 23 20 26 26 C 1.34934 * 120.56037 * 182.98100 * 25 24 23 27 27 H 1.08999 * 109.47157 * 60.00605 * 1 2 3 28 28 H 1.09006 * 109.46629 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47240 * 300.00092 * 1 2 3 30 30 H 0.96999 * 120.00205 * 180.02562 * 7 6 4 31 31 H 1.08004 * 119.19026 * 359.92827 * 16 15 13 32 32 H 1.08993 * 109.27073 * 337.19581 * 18 17 16 33 33 H 1.09000 * 109.27120 * 96.70148 * 18 17 16 34 34 H 1.09004 * 109.93976 * 61.62429 * 19 18 17 35 35 H 1.09001 * 109.93581 * 182.85389 * 19 18 17 36 36 H 1.08000 * 119.71954 * 2.96097 * 25 24 23 37 37 H 1.07997 * 120.77328 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3227 -1.1197 -4.0078 9 1 1.3451 -2.1619 -4.4122 10 1 2.4875 -0.1404 -5.1119 11 1 3.6311 -1.7566 -3.7117 12 8 2.0140 -0.6843 1.1856 13 6 2.2179 0.0674 2.2859 14 8 1.9976 1.2625 2.2548 15 6 2.7019 -0.5593 3.5258 16 6 2.9141 0.1960 4.6535 17 7 3.3552 -0.3614 5.8120 18 6 3.4672 0.5527 6.9535 19 6 4.6917 0.2021 7.8036 20 16 4.4964 -1.5292 8.3320 21 8 5.7400 -2.0701 8.7562 22 8 3.3186 -1.6887 9.1109 23 7 4.1662 -2.3096 6.9121 24 6 3.6569 -1.6942 5.8701 25 6 3.4349 -2.5249 4.7293 26 6 2.9714 -1.9981 3.5768 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.7082 1.1606 -3.4845 31 1 2.7223 1.2584 4.6197 32 1 3.5642 1.5748 6.5877 33 1 2.5697 0.4739 7.5669 34 1 5.5995 0.3094 7.2099 35 1 4.7376 0.8541 8.6759 36 1 3.6401 -3.5835 4.7898 37 1 2.8027 -2.6229 2.7121 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733707868.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:55 Heat of formation + Delta-G solvation = -115.005042 kcal Electronic energy + Delta-G solvation = -24988.447396 eV Core-core repulsion = 21051.289351 eV Total energy + Delta-G solvation = -3937.158045 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.41346 -40.99673 -38.19140 -37.62308 -37.02579 -36.43491 -35.90985 -35.25197 -32.48649 -31.72415 -30.67375 -27.39916 -26.30618 -25.92027 -24.43851 -23.26714 -21.63228 -20.32787 -19.58655 -19.09841 -18.77528 -18.08308 -17.78023 -17.44233 -17.25944 -16.76104 -16.70508 -16.38435 -16.33657 -15.73889 -15.04672 -14.74913 -14.56505 -14.24441 -14.05313 -13.89874 -13.56421 -13.44253 -13.27979 -13.17641 -13.15528 -12.99873 -12.85332 -12.75210 -12.36338 -12.30687 -12.13359 -12.02344 -11.55520 -11.48817 -11.33861 -10.93899 -10.78363 -10.54737 -9.30104 -8.24576 -6.39977 -0.83881 -0.43839 -0.39449 0.76280 1.41949 1.47324 1.47798 1.58717 1.79488 1.98711 2.26754 2.44195 2.65805 2.85130 3.07317 3.18308 3.37885 3.49940 3.59336 3.75308 3.78342 4.03974 4.09166 4.31696 4.48608 4.58993 4.61924 4.76423 4.85929 4.91634 5.01111 5.14360 5.22105 5.31079 5.54631 5.69944 5.96000 5.96434 6.11557 6.64347 6.95066 7.31536 8.82695 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.032003 B = 0.002569 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.715010 B =10898.672452 C =11326.276247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.222 3.778 3 H 0.014 0.986 4 C -0.545 4.545 5 H 0.071 0.929 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.977 3.023 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.264 1.264 12 O -0.353 6.353 13 C 0.512 3.488 14 O -0.548 6.548 15 C -0.216 4.216 16 C 0.220 3.780 17 N -0.500 5.500 18 C 0.080 3.920 19 C -0.644 4.644 20 S 2.543 3.457 21 O -0.992 6.992 22 O -1.003 7.003 23 N -0.999 5.999 24 C 0.513 3.487 25 C -0.169 4.169 26 C 0.028 3.972 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.028 0.972 30 H 0.270 0.730 31 H 0.220 0.780 32 H 0.178 0.822 33 H 0.129 0.871 34 H 0.160 0.840 35 H 0.192 0.808 36 H 0.178 0.822 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.781 1.703 16.611 17.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.169 3.831 3 H 0.032 0.968 4 C -0.583 4.583 5 H 0.089 0.911 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.801 3.199 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.189 1.189 12 O -0.269 6.269 13 C 0.359 3.641 14 O -0.441 6.441 15 C -0.224 4.224 16 C 0.091 3.909 17 N -0.193 5.193 18 C -0.040 4.040 19 C -0.776 4.776 20 S 2.638 3.362 21 O -0.983 6.983 22 O -0.992 6.992 23 N -0.854 5.854 24 C 0.259 3.741 25 C -0.193 4.193 26 C 0.003 3.997 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.236 0.764 32 H 0.195 0.805 33 H 0.147 0.853 34 H 0.178 0.822 35 H 0.210 0.790 36 H 0.195 0.805 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.020 1.067 17.877 18.599 hybrid contribution 0.042 0.864 -1.195 1.476 sum 5.062 1.931 16.681 17.539 Atomic orbital electron populations 1.22012 0.96790 1.00497 1.00978 1.20346 0.91886 0.92247 0.78659 0.96780 1.21317 1.33184 1.13911 0.89859 0.91123 1.25736 0.94827 0.95626 1.01985 1.70000 1.36676 1.23655 1.25103 0.85261 0.79064 0.78088 0.77493 1.19515 1.20716 1.18868 1.86515 1.76177 1.43070 1.21101 1.20832 0.74047 0.84715 0.84533 1.90803 1.50930 1.17082 1.85294 1.19587 1.15413 0.95259 0.92104 1.22692 0.85815 1.00625 0.81795 1.45344 1.53435 1.07876 1.12687 1.22610 0.98600 0.97053 0.85689 1.30762 1.07029 1.26843 1.12938 1.06815 0.74151 0.77769 0.77485 1.93536 1.45596 1.76943 1.82190 1.93564 1.48816 1.85459 1.71347 1.75140 1.45735 1.46098 1.18410 1.19336 0.81491 0.80084 0.93181 1.21514 1.06742 1.01908 0.89100 1.22737 0.86465 0.92108 0.98347 0.90291 0.93573 0.95302 0.92116 0.76385 0.80494 0.85308 0.82204 0.79027 0.80465 0.81311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.79 9.33 71.98 0.67 -6.12 16 2 C 0.22 10.96 2.56 29.85 0.08 11.04 16 3 H 0.01 0.80 7.16 -2.38 -0.02 0.78 16 4 C -0.55 -28.50 8.90 25.60 0.23 -28.28 16 5 H 0.07 3.59 7.81 -2.91 -0.02 3.57 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.92 -49.71 11.32 21.45 0.24 -49.47 16 8 Si 0.98 40.50 29.54 68.60 2.03 42.53 16 9 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 10 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 12 O -0.35 -14.47 9.28 -57.15 -0.53 -15.00 16 13 C 0.51 17.34 7.87 70.15 0.55 17.89 16 14 O -0.55 -21.07 15.57 19.63 0.31 -20.76 16 15 C -0.22 -4.77 6.00 -19.00 -0.11 -4.89 16 16 C 0.22 3.07 9.67 83.86 0.81 3.88 16 17 N -0.50 -6.32 2.99 -518.79 -1.55 -7.87 16 18 C 0.08 0.42 6.20 86.39 0.54 0.95 16 19 C -0.64 -4.77 6.81 72.03 0.49 -4.28 16 20 S 2.54 56.48 6.04 -56.49 -0.34 56.14 16 21 O -0.99 -30.57 18.11 -127.69 -2.31 -32.89 16 22 O -1.00 -28.68 18.11 -127.69 -2.31 -30.99 16 23 N -1.00 -24.04 10.54 -54.89 -0.58 -24.61 16 24 C 0.51 9.83 7.29 135.07 0.98 10.81 16 25 C -0.17 -3.08 9.76 22.67 0.22 -2.86 16 26 C 0.03 0.53 9.86 23.66 0.23 0.77 16 27 H 0.08 4.05 6.07 -2.39 -0.01 4.04 16 28 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 31 H 0.22 1.78 7.21 -2.91 -0.02 1.76 16 32 H 0.18 -0.60 7.60 -2.39 -0.02 -0.62 16 33 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.16 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.19 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.18 2.86 8.06 -2.91 -0.02 2.83 16 37 H 0.17 3.15 7.81 -2.91 -0.02 3.12 16 Total: -1.00 -81.53 333.12 1.20 -80.33 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: 1.11 Total: 2.28 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 5.14 Total: 0.31 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -1.88 Total: -81.95 kcal Atomic # 8 Polarization: -94.78 SS G_CDS: -4.85 Total: -99.63 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 56.48 SS G_CDS: -0.34 Total: 56.14 kcal Total: -81.53 1.20 -80.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733707868.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.676 kcal (2) G-P(sol) polarization free energy of solvation -81.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds