Wall clock time and date at job start Fri Apr 10 2020 18:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 119.99754 * 2 1 4 4 C 1.50694 * 109.47234 * 270.00436 * 3 2 1 5 5 O 1.21291 * 120.00407 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99916 * 179.97438 * 4 3 2 7 7 C 1.37100 * 120.00125 * 179.97438 * 6 4 3 8 8 H 1.08000 * 119.99761 * 355.87625 * 7 6 4 9 9 C 1.38948 * 120.00116 * 175.86955 * 7 6 4 10 10 N 1.31406 * 120.00038 * 33.84321 * 9 7 6 11 11 Si 1.86804 * 119.99890 * 213.84233 * 9 7 6 12 12 H 1.48497 * 109.47160 * 95.00069 * 11 9 7 13 13 H 1.48506 * 109.47119 * 214.99930 * 11 9 7 14 14 H 1.48501 * 109.47141 * 334.99886 * 11 9 7 15 15 C 1.46503 * 120.00333 * 359.97438 * 6 4 3 16 16 C 1.50700 * 109.47164 * 93.88634 * 15 6 4 17 17 O 1.20829 * 119.99919 * 0.02562 * 16 15 6 18 18 O 1.34226 * 119.99878 * 180.02562 * 16 15 6 19 19 C 1.34769 * 120.00383 * 180.02562 * 2 1 3 20 20 O 1.21701 * 120.00271 * 179.90434 * 19 2 1 21 21 C 1.46589 * 119.99812 * 359.90396 * 19 2 1 22 22 C 1.36652 * 125.45548 * 171.83267 * 21 19 2 23 23 C 1.37474 * 113.29163 * 179.97438 * 22 21 19 24 24 C 1.33810 * 115.10375 * 359.97438 * 23 22 21 25 25 S 1.70610 * 110.95667 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.46913 * 263.38817 * 1 2 3 27 27 H 1.08994 * 109.47533 * 23.39388 * 1 2 3 28 28 H 1.09000 * 109.46705 * 143.39534 * 1 2 3 29 29 H 1.09000 * 109.46969 * 30.00256 * 3 2 1 30 30 H 1.08994 * 109.46948 * 149.99766 * 3 2 1 31 31 H 0.97007 * 119.99716 * 180.02562 * 10 9 7 32 32 H 1.08990 * 109.47087 * 213.88719 * 15 6 4 33 33 H 1.09003 * 109.46708 * 333.89161 * 15 6 4 34 34 H 0.96701 * 116.99632 * 180.02562 * 18 16 15 35 35 H 1.07994 * 123.35300 * 0.24530 * 22 21 19 36 36 H 1.08006 * 122.44597 * 180.02562 * 23 22 21 37 37 H 1.08001 * 124.52128 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 8 2.0549 1.0212 -2.3427 6 7 3.1106 2.8517 -1.6670 7 6 3.3395 3.2474 -2.9595 8 1 3.0487 2.6076 -3.7796 9 6 3.9454 4.4715 -3.2145 10 7 4.8568 4.9377 -2.3906 11 14 3.4644 5.4544 -4.7284 12 1 2.4222 6.4473 -4.3634 13 1 4.6576 6.1617 -5.2591 14 1 2.9312 4.5358 -5.7662 15 6 3.5856 3.6768 -0.5535 16 6 5.0132 3.3150 -0.2335 17 8 5.5761 2.4564 -0.8706 18 8 5.6592 3.9465 0.7592 19 6 2.1390 -1.1671 -0.0005 20 8 3.3560 -1.1671 -0.0023 21 6 1.4061 -2.4366 0.0010 22 6 1.9637 -3.6740 -0.1574 23 6 1.0437 -4.6946 -0.1140 24 6 -0.2237 -4.3087 0.0740 25 16 -0.3312 -2.6112 0.2082 26 1 -0.3633 -0.1183 1.0208 27 1 -0.3634 0.9431 -0.4080 28 1 -0.3633 -0.8250 -0.6128 29 1 1.6084 2.0284 0.5139 30 1 3.1498 1.1385 0.5138 31 1 5.2796 5.7925 -2.5685 32 1 3.5312 4.7291 -0.8320 33 1 2.9610 3.4998 0.3221 34 1 6.5736 3.6804 0.9269 35 1 3.0224 -3.8346 -0.2981 36 1 1.3235 -5.7321 -0.2227 37 1 -1.0662 -4.9819 0.1328 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737388410.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:22 Heat of formation + Delta-G solvation = -86.965442 kcal Electronic energy + Delta-G solvation = -25886.764846 eV Core-core repulsion = 21950.822689 eV Total energy + Delta-G solvation = -3935.942157 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.96377 -39.22860 -38.10466 -37.33093 -35.47814 -35.00243 -34.42732 -31.93191 -30.35213 -28.39303 -27.65046 -26.63072 -25.00058 -23.96566 -21.31243 -20.99163 -19.07603 -19.01291 -17.86282 -17.15103 -17.05012 -16.57692 -16.11632 -15.80415 -15.56168 -15.20425 -14.97112 -14.43862 -14.38923 -13.92094 -13.67449 -13.31372 -13.09603 -13.04876 -12.81162 -12.56714 -12.39355 -12.18264 -11.99693 -11.80650 -11.68302 -11.28618 -10.98241 -10.59821 -10.46841 -10.37834 -10.28732 -9.79102 -9.61306 -9.16086 -8.92211 -8.86882 -8.53756 -8.17251 -8.05216 -6.57441 -3.81379 0.55273 1.48020 1.91339 2.43794 2.99400 3.10593 3.24863 3.31482 3.42527 3.45583 3.59597 4.03381 4.22055 4.62632 4.70685 4.93029 4.99955 5.03491 5.27932 5.29253 5.39873 5.47980 5.55790 5.68789 5.79299 5.82344 5.95094 6.16351 6.32507 6.41817 6.51300 6.58650 7.47254 7.49842 7.52177 7.91155 8.30259 8.36909 9.02538 9.05049 9.26795 9.78865 10.51641 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.019236 B = 0.003658 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.271683 B = 7653.149860 C = 8345.766438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.589 5.589 3 C 0.104 3.896 4 C 0.438 3.562 5 O -0.567 6.567 6 N -0.428 5.428 7 C -0.308 4.308 8 H 0.112 0.888 9 C 0.036 3.964 10 N -0.867 5.867 11 Si 0.917 3.083 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.133 3.867 16 C 0.484 3.516 17 O -0.500 6.500 18 O -0.534 6.534 19 C 0.590 3.410 20 O -0.520 6.520 21 C -0.254 4.254 22 C -0.061 4.061 23 C -0.149 4.149 24 C -0.267 4.267 25 S 0.223 5.777 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.272 0.728 32 H 0.137 0.863 33 H 0.078 0.922 34 H 0.392 0.608 35 H 0.152 0.848 36 H 0.139 0.861 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.874 -7.866 10.668 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.321 5.321 3 C -0.022 4.022 4 C 0.226 3.774 5 O -0.449 6.449 6 N -0.149 5.149 7 C -0.434 4.434 8 H 0.130 0.870 9 C -0.167 4.167 10 N -0.506 5.506 11 Si 0.743 3.257 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.192 1.192 15 C 0.007 3.993 16 C 0.324 3.676 17 O -0.384 6.384 18 O -0.345 6.345 19 C 0.378 3.622 20 O -0.397 6.397 21 C -0.374 4.374 22 C -0.094 4.094 23 C -0.180 4.180 24 C -0.403 4.403 25 S 0.491 5.509 26 H 0.084 0.916 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.083 0.917 32 H 0.154 0.846 33 H 0.096 0.904 34 H 0.249 0.751 35 H 0.169 0.831 36 H 0.156 0.844 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.771 -7.214 10.169 17.146 hybrid contribution 1.850 -0.695 -0.930 2.184 sum -9.920 -7.909 9.239 15.695 Atomic orbital electron populations 1.21973 0.79842 1.04009 1.01672 1.47087 1.06494 1.05308 1.73198 1.21368 0.98679 0.84864 0.97275 1.20214 0.84895 0.81826 0.90477 1.90535 1.55731 1.53011 1.45641 1.43653 1.46719 1.18814 1.05670 1.19696 1.39253 1.01539 0.82950 0.87038 1.25153 0.94304 0.97801 0.99490 1.70028 1.20013 1.20531 1.39988 0.86048 0.78325 0.79680 0.81600 1.20220 1.21219 1.19227 1.21154 0.87339 1.00885 0.89925 1.23903 0.90523 0.77695 0.75440 1.90663 1.67940 1.31912 1.47918 1.84515 1.31284 1.65232 1.53464 1.16939 0.86730 0.82060 0.76509 1.90866 1.12645 1.86551 1.49620 1.24637 0.97383 0.97877 1.17517 1.20781 1.01608 0.89983 0.97039 1.19977 0.91945 1.00695 1.05352 1.25862 1.01727 1.03963 1.08796 1.83481 1.03382 0.97605 1.66414 0.91640 0.88838 0.90729 0.88490 0.88124 0.91725 0.84593 0.90436 0.75111 0.83068 0.84374 0.82083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.87 8.92 59.85 0.53 1.40 16 2 N -0.59 -10.21 2.36 -184.55 -0.44 -10.65 16 3 C 0.10 1.94 4.35 -5.19 -0.02 1.92 16 4 C 0.44 10.62 7.70 -10.99 -0.08 10.53 16 5 O -0.57 -15.71 16.01 5.55 0.09 -15.62 16 6 N -0.43 -10.72 2.14 -116.10 -0.25 -10.96 16 7 C -0.31 -8.51 9.31 -14.93 -0.14 -8.65 16 8 H 0.11 3.33 7.35 -52.49 -0.39 2.94 16 9 C 0.04 0.93 4.87 -17.47 -0.09 0.85 16 10 N -0.87 -22.30 9.45 55.50 0.52 -21.77 16 11 Si 0.92 20.22 29.66 -169.99 -5.04 15.18 16 12 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 13 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 C 0.13 2.84 5.16 -5.19 -0.03 2.81 16 16 C 0.48 10.97 6.67 36.01 0.24 11.21 16 17 O -0.50 -13.64 17.13 -18.75 -0.32 -13.96 16 18 O -0.53 -9.73 13.42 -39.25 -0.53 -10.26 16 19 C 0.59 11.36 7.64 -12.90 -0.10 11.26 16 20 O -0.52 -12.17 16.43 5.19 0.09 -12.08 16 21 C -0.25 -3.91 6.24 -36.79 -0.23 -4.14 16 22 C -0.06 -0.86 10.02 -40.43 -0.41 -1.26 16 23 C -0.15 -1.66 10.15 -41.41 -0.42 -2.08 16 24 C -0.27 -2.65 10.92 29.18 0.32 -2.33 16 25 S 0.22 2.39 17.89 -107.50 -1.92 0.46 16 26 H 0.07 0.59 7.76 -51.93 -0.40 0.19 16 27 H 0.09 1.09 8.02 -51.93 -0.42 0.67 16 28 H 0.08 0.92 4.62 -23.24 -0.11 0.81 16 29 H 0.10 1.35 7.34 -51.93 -0.38 0.97 16 30 H 0.10 1.99 7.39 -51.93 -0.38 1.61 16 31 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 32 H 0.14 2.99 6.00 -51.93 -0.31 2.68 16 33 H 0.08 1.28 6.30 -51.93 -0.33 0.95 16 34 H 0.39 5.61 9.10 45.56 0.41 6.02 16 35 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 334.13 15.07 5.04 5.04 Total: -1.00 -37.87 334.13 -5.89 -43.76 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -2.70 Total: 9.34 kcal Atomic # 6 Polarization: 21.95 SS G_CDS: -0.42 Total: 21.53 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: -0.16 Total: -43.38 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -0.67 Total: -51.92 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.04 Total: 15.18 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -1.92 Total: 0.46 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -37.87 -5.89 -43.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737388410.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.206 kcal (2) G-P(sol) polarization free energy of solvation -37.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds