Wall clock time and date at job start Fri Apr 10 2020 18:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86806 * 120.00269 * 2 1 4 4 H 1.48493 * 109.47191 * 90.00028 * 3 2 1 5 5 H 1.48493 * 109.47025 * 210.00202 * 3 2 1 6 6 H 1.48502 * 109.46832 * 330.00150 * 3 2 1 7 7 C 1.38651 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00181 * 0.02562 * 7 2 1 9 9 O 1.34832 * 120.00703 * 179.97438 * 7 2 1 10 10 C 1.35741 * 117.00506 * 174.94177 * 9 7 2 11 11 C 1.38876 * 120.07311 * 185.26117 * 10 9 7 12 12 C 1.38103 * 119.93681 * 179.67743 * 11 10 9 13 13 C 1.38307 * 120.06257 * 0.62793 * 12 11 10 14 14 C 1.50701 * 119.93088 * 179.70119 * 13 12 11 15 15 N 1.46901 * 109.46503 * 269.97340 * 14 13 12 16 16 C 1.47442 * 111.00073 * 69.87531 * 15 14 13 17 17 C 1.54324 * 107.23488 * 123.25414 * 16 15 14 18 18 C 1.55138 * 103.01651 * 22.28547 * 17 16 15 19 19 H 1.08994 * 110.99923 * 82.47540 * 18 17 16 20 20 S 1.81406 * 110.98941 * 206.25639 * 18 17 16 21 21 N 1.65605 * 104.44661 * 303.54496 * 20 18 17 22 22 O 1.42098 * 110.54437 * 55.16497 * 20 18 17 23 23 O 1.42099 * 110.54137 * 191.92144 * 20 18 17 24 24 C 1.47850 * 110.99722 * 190.71485 * 15 14 13 25 25 C 1.38298 * 120.14003 * 359.67026 * 13 12 11 26 26 C 1.38104 * 120.06875 * 0.02562 * 25 13 12 27 27 H 0.97004 * 120.00033 * 359.97438 * 1 2 3 28 28 H 1.08009 * 120.03349 * 0.02562 * 11 10 9 29 29 H 1.07993 * 119.97189 * 180.31976 * 12 11 10 30 30 H 1.09005 * 109.47129 * 29.96761 * 14 13 12 31 31 H 1.08992 * 109.47421 * 149.97529 * 14 13 12 32 32 H 1.09008 * 109.88708 * 242.65959 * 16 15 14 33 33 H 1.08994 * 109.89008 * 3.68663 * 16 15 14 34 34 H 1.09006 * 110.70359 * 140.66271 * 17 16 15 35 35 H 1.08996 * 110.70777 * 263.90257 * 17 16 15 36 36 H 0.96999 * 119.99902 * 150.00545 * 21 20 18 37 37 H 0.97000 * 119.99861 * 329.99456 * 21 20 18 38 38 H 1.08997 * 110.37244 * 332.46489 * 24 15 14 39 39 H 1.09000 * 110.37455 * 94.80462 * 24 15 14 40 40 H 1.07995 * 119.97045 * 180.02562 * 25 13 12 41 41 H 1.07999 * 120.03225 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 1.4000 5 1 3.5471 1.4401 -0.7000 6 1 1.4470 2.6527 -0.7000 7 6 2.0088 -1.2007 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2009 0.0000 10 6 3.9734 -2.4056 0.1072 11 6 5.3557 -2.4722 0.2233 12 6 5.9792 -3.6990 0.3389 13 6 5.2295 -4.8612 0.3261 14 6 5.9136 -6.1987 0.4457 15 7 6.2549 -6.6955 -0.8940 16 6 7.3348 -5.8922 -1.4962 17 6 8.4819 -6.8615 -1.8516 18 6 7.7623 -8.2322 -1.9530 19 1 7.2971 -8.3577 -2.9307 20 16 8.9075 -9.5947 -1.6026 21 7 10.1378 -9.3910 -2.6922 22 8 9.5269 -9.4125 -0.3367 23 8 8.3249 -10.8403 -1.9607 24 6 6.6920 -8.1068 -0.8402 25 6 3.8533 -4.7985 0.2045 26 6 3.2234 -3.5744 0.0948 27 1 -0.4850 0.8401 0.0004 28 1 5.9421 -1.5652 0.2287 29 1 7.0537 -3.7513 0.4343 30 1 6.8238 -6.0898 1.0356 31 1 5.2451 -6.9062 0.9361 32 1 6.9719 -5.4003 -2.3987 33 1 7.6842 -5.1463 -0.7824 34 1 8.9327 -6.5913 -2.8066 35 1 9.2319 -6.8775 -1.0609 36 1 11.0372 -9.6763 -2.4672 37 1 9.9591 -8.9865 -3.5555 38 1 7.1282 -8.3321 0.1330 39 1 5.8529 -8.7720 -1.0440 40 1 3.2706 -5.7077 0.1952 41 1 2.1487 -3.5261 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772222575.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:14 Heat of formation + Delta-G solvation = -91.472942 kcal Electronic energy + Delta-G solvation = -24936.238306 eV Core-core repulsion = 21135.933783 eV Total energy + Delta-G solvation = -3800.304522 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.02018 -40.05282 -38.29203 -38.07957 -37.05870 -34.56924 -34.16012 -33.67304 -31.84989 -30.64655 -30.08131 -27.60094 -25.82231 -23.77385 -22.95879 -22.49880 -21.46263 -20.33741 -19.82733 -19.08817 -18.60023 -18.28792 -17.59865 -16.93479 -16.69562 -16.36518 -16.28192 -15.80498 -15.69654 -15.52581 -15.23968 -14.63421 -14.49170 -14.41102 -14.12040 -14.02711 -13.65159 -13.32347 -13.24575 -13.20130 -13.11548 -12.97309 -12.66055 -12.58333 -12.47372 -12.32927 -12.10676 -11.90368 -11.76066 -11.62868 -11.25196 -11.19610 -10.89837 -9.78142 -9.33921 -8.97197 -8.49807 -6.22465 -0.78917 0.58470 0.63218 1.31560 1.35753 1.52119 1.89652 2.28125 2.61717 2.72511 2.94291 3.04345 3.12447 3.24368 3.40111 3.61859 3.95361 3.99703 4.06120 4.17058 4.19466 4.31486 4.39101 4.56847 4.58659 4.64709 4.72071 4.80988 4.85244 4.90621 5.01239 5.17450 5.26099 5.29340 5.38872 5.56448 5.75787 5.81297 5.91565 5.97896 6.04654 6.25785 6.39554 6.84545 7.59159 8.61888 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.038121 B = 0.002192 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.327528 B =12770.222606 C =13046.284015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.008 3.992 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.262 1.262 6 H -0.268 1.268 7 C -0.399 4.399 8 H 0.079 0.921 9 O -0.245 6.245 10 C 0.120 3.880 11 C -0.190 4.190 12 C -0.060 4.060 13 C -0.144 4.144 14 C 0.100 3.900 15 N -0.529 5.529 16 C 0.037 3.963 17 C -0.116 4.116 18 C -0.584 4.584 19 H 0.172 0.828 20 S 2.642 3.358 21 N -1.234 6.234 22 O -0.995 6.995 23 O -1.002 7.002 24 C 0.052 3.948 25 C -0.055 4.055 26 C -0.238 4.238 27 H 0.284 0.716 28 H 0.129 0.871 29 H 0.152 0.848 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.123 0.877 35 H 0.089 0.911 36 H 0.427 0.573 37 H 0.428 0.572 38 H 0.064 0.936 39 H 0.104 0.896 40 H 0.130 0.870 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.038 -16.924 -5.744 29.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.186 1.186 6 H -0.193 1.193 7 C -0.475 4.475 8 H 0.097 0.903 9 O -0.153 6.153 10 C 0.071 3.929 11 C -0.210 4.210 12 C -0.078 4.078 13 C -0.145 4.145 14 C -0.027 4.027 15 N -0.254 5.254 16 C -0.091 4.091 17 C -0.155 4.155 18 C -0.696 4.696 19 H 0.190 0.810 20 S 2.734 3.266 21 N -0.912 5.912 22 O -0.985 6.985 23 O -0.991 6.991 24 C -0.077 4.077 25 C -0.073 4.073 26 C -0.258 4.258 27 H 0.094 0.906 28 H 0.147 0.853 29 H 0.169 0.831 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.141 0.859 35 H 0.107 0.893 36 H 0.259 0.741 37 H 0.258 0.742 38 H 0.082 0.918 39 H 0.122 0.878 40 H 0.148 0.852 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 22.288 -17.308 -5.269 28.706 hybrid contribution -0.066 1.214 -0.111 1.220 sum 22.222 -16.094 -5.379 27.960 Atomic orbital electron populations 1.69732 1.06959 1.29597 1.50232 1.25304 0.95898 1.02242 0.95557 0.85191 0.78794 0.77287 0.79265 1.19091 1.18591 1.19255 1.20695 0.78168 0.96059 1.52590 0.90306 1.83506 1.21149 1.27531 1.83109 1.19692 0.93291 0.84984 0.94943 1.20485 0.90433 0.99778 1.10255 1.20943 1.00009 0.90097 0.96772 1.19553 0.92887 0.95002 1.07048 1.21092 0.99322 0.92798 0.89468 1.63653 1.39467 1.01195 1.21036 1.22956 0.89532 0.96043 1.00579 1.22747 0.97511 0.89561 1.05635 1.31590 1.12361 1.14890 1.10742 0.80990 1.03720 0.74740 0.75011 0.73132 1.52755 1.25219 1.80875 1.32326 1.93563 1.74717 1.87088 1.43101 1.93591 1.79741 1.41900 1.83843 1.22960 0.96868 0.92223 0.95653 1.20862 0.94788 0.95847 0.95845 1.21269 1.00078 0.93319 1.11099 0.90589 0.85327 0.83062 0.92237 0.89401 0.90497 0.91271 0.85868 0.89254 0.74133 0.74179 0.91815 0.87806 0.85227 0.87749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.47 13.96 21.61 0.30 -55.17 16 2 C 0.01 0.47 5.49 84.83 0.47 0.94 16 3 Si 0.97 45.34 28.62 68.60 1.96 47.30 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.40 -23.60 9.95 67.92 0.68 -22.92 16 8 H 0.08 4.91 5.44 -2.91 -0.02 4.90 16 9 O -0.25 -13.30 8.59 -22.66 -0.19 -13.49 16 10 C 0.12 5.55 6.65 22.58 0.15 5.70 16 11 C -0.19 -6.98 9.99 22.39 0.22 -6.76 16 12 C -0.06 -1.71 8.73 22.25 0.19 -1.51 16 13 C -0.14 -4.09 5.11 -19.83 -0.10 -4.19 16 14 C 0.10 2.11 4.75 85.56 0.41 2.51 16 15 N -0.53 -10.11 5.15 -890.07 -4.58 -14.69 16 16 C 0.04 0.58 6.26 86.65 0.54 1.12 16 17 C -0.12 -1.00 6.30 31.78 0.20 -0.79 16 18 C -0.58 -5.58 3.78 31.98 0.12 -5.46 16 19 H 0.17 0.93 8.14 -2.39 -0.02 0.92 16 20 S 2.64 32.63 5.49 -56.49 -0.31 32.32 16 21 N -1.23 -5.50 9.23 37.02 0.34 -5.16 16 22 O -1.00 -19.52 17.73 -127.65 -2.26 -21.78 16 23 O -1.00 -20.87 18.10 -127.65 -2.31 -23.18 16 24 C 0.05 0.77 6.16 86.77 0.53 1.31 16 25 C -0.05 -1.88 9.69 22.25 0.22 -1.67 16 26 C -0.24 -10.47 9.17 22.39 0.21 -10.26 16 27 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 28 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 29 H 0.15 3.10 6.91 -2.91 -0.02 3.08 16 30 H 0.06 1.07 7.90 -2.38 -0.02 1.05 16 31 H 0.09 1.72 8.01 -2.39 -0.02 1.70 16 32 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.07 1.07 5.49 -2.39 -0.01 1.05 16 34 H 0.12 0.30 8.14 -2.38 -0.02 0.28 16 35 H 0.09 0.74 7.84 -2.39 -0.02 0.72 16 36 H 0.43 1.23 8.96 -96.74 -0.87 0.36 16 37 H 0.43 -0.62 8.96 -96.74 -0.87 -1.49 16 38 H 0.06 0.91 7.56 -2.39 -0.02 0.90 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 41 H 0.10 5.11 5.64 -2.91 -0.02 5.09 16 Total: -1.00 -81.23 349.94 -3.87 -85.10 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -0.65 Total: 10.74 kcal Atomic # 6 Polarization: -45.82 SS G_CDS: 3.83 Total: -41.99 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -3.94 Total: -75.02 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -4.77 Total: -58.45 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.96 Total: 47.30 kcal Atomic # 16 Polarization: 32.63 SS G_CDS: -0.31 Total: 32.32 kcal Total: -81.23 -3.87 -85.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772222575.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.374 kcal (2) G-P(sol) polarization free energy of solvation -81.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds