Wall clock time and date at job start Fri Apr 10 2020 18:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99758 * 2 1 4 4 H 1.48493 * 109.47289 * 270.00057 * 3 2 1 5 5 H 1.48499 * 109.47449 * 30.00524 * 3 2 1 6 6 H 1.48503 * 109.47220 * 150.00065 * 3 2 1 7 7 C 1.37875 * 120.00433 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99550 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00275 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47093 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00186 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99498 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99867 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99545 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46991 * 179.97438 * 14 13 11 16 16 S 1.81408 * 109.47011 * 179.97438 * 15 14 13 17 17 O 1.42105 * 108.57542 * 65.51943 * 16 15 14 18 18 O 1.42092 * 108.57879 * 294.49080 * 16 15 14 19 19 C 1.81396 * 101.91803 * 180.02562 * 16 15 14 20 20 C 1.50707 * 109.47003 * 180.02562 * 19 16 15 21 21 C 1.38238 * 119.99792 * 90.00226 * 20 19 16 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.98162 * 20 19 16 26 26 H 0.97003 * 119.99992 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47315 * 59.99978 * 9 7 2 28 28 H 1.08993 * 109.47223 * 299.99681 * 9 7 2 29 29 H 0.96996 * 120.00159 * 0.02562 * 10 9 7 30 30 H 0.96996 * 120.00486 * 359.97438 * 13 11 10 31 31 H 1.09010 * 109.47374 * 59.99844 * 14 13 11 32 32 H 1.08999 * 109.47322 * 299.99566 * 14 13 11 33 33 H 1.09007 * 109.47071 * 60.00421 * 15 14 13 34 34 H 1.08996 * 109.47462 * 299.99759 * 15 14 13 35 35 H 1.09005 * 109.47589 * 60.00614 * 19 16 15 36 36 H 1.09000 * 109.47576 * 299.99772 * 19 16 15 37 37 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 38 38 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 41 41 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 5.3251 -2.8214 -0.0020 12 8 6.1151 -1.8972 -0.0025 13 7 5.7743 -4.0921 -0.0024 14 6 7.2146 -4.3597 -0.0029 15 6 7.4525 -5.8711 -0.0026 16 16 9.2361 -6.2025 -0.0040 17 8 9.7841 -5.7361 1.2213 18 8 9.7821 -5.7367 -1.2303 19 6 9.2801 -8.0160 -0.0043 20 6 10.7128 -8.4836 -0.0048 21 6 11.3701 -8.6983 1.1921 22 6 12.6841 -9.1278 1.1917 23 6 13.3405 -9.3431 -0.0057 24 6 12.6848 -9.1233 -1.2026 25 6 11.3694 -8.6983 -1.2022 26 1 -0.4850 0.8401 0.0004 27 1 3.8753 -0.6803 0.8888 28 1 3.8746 -0.6800 -0.8911 29 1 3.3697 -3.3124 -0.0010 30 1 5.1440 -4.8294 -0.0016 31 1 7.6661 -3.9211 0.8871 32 1 7.6655 -3.9208 -0.8929 33 1 7.0011 -6.3101 -0.8924 34 1 7.0018 -6.3098 0.8876 35 1 8.7747 -8.3916 -0.8941 36 1 8.7760 -8.3919 0.8860 37 1 10.8572 -8.5305 2.1277 38 1 13.1978 -9.2952 2.1268 39 1 14.3669 -9.6791 -0.0060 40 1 13.1989 -9.2873 -2.1381 41 1 10.8556 -8.5313 -2.1373 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787370228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:36 Heat of formation + Delta-G solvation = -107.244944 kcal Electronic energy + Delta-G solvation = -23976.383644 eV Core-core repulsion = 20175.395197 eV Total energy + Delta-G solvation = -3800.988447 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.97339 -40.18348 -38.05678 -37.12247 -36.76643 -35.99006 -34.44029 -34.02837 -32.07954 -31.85074 -29.59641 -28.42466 -25.06125 -23.73503 -23.57324 -22.44500 -22.06294 -20.21734 -19.72192 -18.40184 -18.14081 -17.78639 -17.40574 -17.23286 -16.80460 -16.72256 -16.27153 -16.05728 -15.94495 -15.46391 -15.44507 -15.01402 -14.40104 -14.35249 -14.24203 -14.20798 -13.79775 -13.58102 -13.41330 -13.15823 -13.07544 -13.03289 -12.88405 -12.67219 -12.32244 -12.15602 -11.95046 -11.92945 -11.80340 -11.64100 -11.30237 -10.91342 -10.41963 -9.89693 -9.72582 -9.68699 -8.39420 -6.45970 -1.21233 0.38476 0.43135 1.33912 1.36275 1.49431 1.75322 1.79962 2.14047 2.29323 2.59625 2.83828 2.96372 3.02857 3.38678 3.43923 3.51985 3.73502 3.87108 4.10075 4.20954 4.25790 4.29312 4.53043 4.53846 4.55999 4.66421 4.68067 4.80253 5.03033 5.05163 5.09975 5.25213 5.34755 5.47703 5.48678 5.52238 5.56604 5.96006 6.02289 6.26591 6.55927 7.13816 7.24756 7.61193 8.75014 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.046172 B = 0.001860 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.286216 B =15048.507177 C =15174.715592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.029 3.971 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.249 3.751 10 N -0.718 5.718 11 C 0.690 3.310 12 O -0.646 6.646 13 N -0.724 5.724 14 C 0.139 3.861 15 C -0.616 4.616 16 S 2.412 3.588 17 O -0.973 6.973 18 O -0.973 6.973 19 C -0.541 4.541 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.133 4.133 23 C -0.118 4.118 24 C -0.133 4.133 25 C -0.120 4.120 26 H 0.272 0.728 27 H 0.010 0.990 28 H 0.009 0.991 29 H 0.408 0.592 30 H 0.419 0.581 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.180 0.820 34 H 0.180 0.820 35 H 0.180 0.820 36 H 0.180 0.820 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.803 -27.249 -0.017 35.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.124 3.876 10 N -0.371 5.371 11 C 0.390 3.610 12 O -0.528 6.528 13 N -0.383 5.383 14 C 0.013 3.987 15 C -0.744 4.744 16 S 2.600 3.400 17 O -0.970 6.970 18 O -0.970 6.970 19 C -0.671 4.671 20 C -0.116 4.116 21 C -0.140 4.140 22 C -0.151 4.151 23 C -0.137 4.137 24 C -0.151 4.151 25 C -0.140 4.140 26 H 0.082 0.918 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.244 0.756 30 H 0.257 0.743 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.197 0.803 34 H 0.197 0.803 35 H 0.197 0.803 36 H 0.197 0.803 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 24.001 -25.635 -0.017 35.117 hybrid contribution -1.153 -0.043 -0.011 1.154 sum 22.848 -25.677 -0.028 34.371 Atomic orbital electron populations 1.69969 1.07573 1.28594 1.50693 1.25540 0.95520 1.02515 0.93622 0.85893 0.79246 0.79520 0.79448 1.19030 1.19752 1.18663 1.21264 0.89747 0.94685 1.52599 0.91945 1.18985 0.93166 0.79822 0.95595 1.45061 1.04394 1.10040 1.77654 1.16290 0.82870 0.83870 0.77992 1.90860 1.56330 1.45185 1.60460 1.44713 1.07651 1.05434 1.80524 1.20781 0.81888 0.93291 1.02751 1.30562 1.25693 1.01894 1.16283 1.08172 0.78048 0.79760 0.74033 1.93554 1.76633 1.79967 1.46808 1.93552 1.76690 1.79991 1.46729 1.29173 1.00918 1.20742 1.16275 1.19235 0.93878 1.03999 0.94520 1.21533 0.95918 0.98307 0.98199 1.21542 0.94741 0.99256 0.99558 1.21643 1.01148 0.98477 0.92428 1.21543 0.94729 0.99266 0.99565 1.21532 0.95902 0.98323 0.98194 0.91829 0.97169 0.97264 0.75635 0.74318 0.91705 0.91680 0.80257 0.80258 0.80253 0.80262 0.83979 0.83731 0.83609 0.83733 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.20 13.96 21.45 0.30 -54.90 16 2 C 0.03 1.61 5.47 84.65 0.46 2.07 16 3 Si 0.94 44.42 27.47 68.60 1.88 46.31 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.26 -12.49 6.54 99.48 0.65 -11.84 16 7 C -0.54 -29.98 9.83 25.60 0.25 -29.73 16 8 H 0.06 3.56 7.84 -2.91 -0.02 3.54 16 9 C 0.25 12.38 4.50 85.63 0.38 12.76 16 10 N -0.72 -28.78 5.55 -482.30 -2.68 -31.46 16 11 C 0.69 26.76 8.57 179.06 1.53 28.29 16 12 O -0.65 -31.37 16.34 -4.00 -0.07 -31.43 16 13 N -0.72 -18.42 5.56 -478.52 -2.66 -21.08 16 14 C 0.14 3.19 5.68 86.38 0.49 3.68 16 15 C -0.62 -5.74 5.92 71.98 0.43 -5.31 16 16 S 2.41 36.03 4.70 -56.49 -0.27 35.77 16 17 O -0.97 -22.98 18.10 -127.37 -2.31 -25.28 16 18 O -0.97 -22.96 18.10 -127.37 -2.30 -25.27 16 19 C -0.54 -3.18 5.93 71.24 0.42 -2.76 16 20 C -0.11 -1.51 5.14 -19.86 -0.10 -1.61 16 21 C -0.12 -1.63 9.70 22.27 0.22 -1.42 16 22 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 23 C -0.12 -1.38 10.05 22.27 0.22 -1.15 16 24 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 25 C -0.12 -1.63 9.70 22.27 0.22 -1.42 16 26 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 27 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16 28 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 29 H 0.41 13.70 8.34 -92.71 -0.77 12.93 16 30 H 0.42 6.82 8.49 -92.71 -0.79 6.04 16 31 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.18 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.18 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.18 -0.20 8.09 -2.39 -0.02 -0.22 16 36 H 0.18 -0.20 8.08 -2.39 -0.02 -0.22 16 37 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 38 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.15 0.97 8.06 -2.91 -0.02 0.94 16 40 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 41 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -90.70 367.88 -3.68 -94.38 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -0.56 Total: 12.42 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 4.97 Total: 0.55 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -5.04 Total: -107.44 kcal Atomic # 8 Polarization: -77.31 SS G_CDS: -4.68 Total: -81.98 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.31 kcal Atomic # 16 Polarization: 36.03 SS G_CDS: -0.27 Total: 35.77 kcal Total: -90.70 -3.68 -94.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787370228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.864 kcal (2) G-P(sol) polarization free energy of solvation -90.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds