Wall clock time and date at job start Fri Apr 10 2020 18:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37099 * 119.99864 * 2 1 4 4 H 1.08001 * 119.99969 * 204.38990 * 3 2 1 5 5 C 1.38954 * 119.99951 * 24.39109 * 3 2 1 6 6 N 1.31408 * 120.00269 * 12.64658 * 5 3 2 7 7 Si 1.86802 * 119.99683 * 192.64451 * 5 3 2 8 8 H 1.48498 * 109.47306 * 90.00526 * 7 5 3 9 9 H 1.48503 * 109.46988 * 210.00103 * 7 5 3 10 10 H 1.48500 * 109.47581 * 329.99909 * 7 5 3 11 11 C 1.34777 * 119.99976 * 180.02562 * 2 1 3 12 12 O 1.21292 * 119.99425 * 179.72166 * 11 2 1 13 13 C 1.50695 * 119.99900 * 0.02562 * 11 2 1 14 14 N 1.46501 * 109.46973 * 179.97438 * 13 11 2 15 15 C 1.40221 * 120.50724 * 89.99386 * 14 13 11 16 16 C 1.38502 * 120.73872 * 15.46811 * 15 14 13 17 17 C 1.38291 * 119.81480 * 180.02562 * 16 15 14 18 18 C 1.38277 * 120.19640 * 0.03128 * 17 16 15 19 19 C 1.38314 * 120.26053 * 359.96751 * 18 17 16 20 20 C 1.38390 * 119.87309 * 0.02562 * 19 18 17 21 21 O 1.35983 * 120.66526 * 180.10351 * 20 19 18 22 22 C 1.42998 * 116.71797 * 147.15310 * 21 20 19 23 23 F 1.39901 * 109.44294 * 166.44129 * 22 21 20 24 24 F 1.39900 * 109.44436 * 286.37039 * 22 21 20 25 25 C 1.35089 * 120.50842 * 269.72324 * 14 13 11 26 26 O 1.21290 * 120.13539 * 1.66255 * 25 14 13 27 27 H 1.09001 * 109.46758 * 265.86707 * 1 2 3 28 28 H 1.08996 * 109.47175 * 25.86675 * 1 2 3 29 29 H 1.08994 * 109.47092 * 145.86902 * 1 2 3 30 30 H 0.96999 * 120.00411 * 179.97438 * 6 5 3 31 31 H 1.08996 * 109.47007 * 299.99363 * 13 11 2 32 32 H 1.08997 * 109.47319 * 59.99870 * 13 11 2 33 33 H 1.08004 * 120.09633 * 0.03728 * 16 15 14 34 34 H 1.07994 * 119.90064 * 180.02562 * 17 16 15 35 35 H 1.08000 * 119.86607 * 179.97438 * 18 17 16 36 36 H 1.08004 * 120.06131 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2291 -0.3862 5 6 1.5487 2.3370 0.4970 6 7 0.4346 2.2492 1.1881 7 14 2.3236 4.0073 0.1825 8 1 1.7868 4.5720 -1.0817 9 1 2.0034 4.9214 1.3082 10 1 3.7968 3.8566 0.0711 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1671 -0.0056 13 6 1.3854 -2.4722 -0.0017 14 7 2.3374 -3.5858 -0.0027 15 6 2.8001 -4.1278 1.2049 16 6 2.1501 -3.8569 2.3976 17 6 2.6232 -4.4012 3.5775 18 6 3.7423 -5.2134 3.5693 19 6 4.3958 -5.4876 2.3815 20 6 3.9281 -4.9466 1.1967 21 8 4.5569 -5.2073 0.0195 22 6 3.7336 -5.2754 -1.1478 23 9 4.5409 -5.2388 -2.2898 24 9 3.0020 -6.4677 -1.1328 25 6 2.7788 -4.1096 -1.1670 26 8 2.4119 -3.6406 -2.2236 27 1 -0.3633 -0.0741 1.0250 28 1 -0.3633 0.9247 -0.4483 29 1 -0.3633 -0.8506 -0.5766 30 1 0.0146 3.0517 1.5354 31 1 0.7585 -2.5306 0.8880 32 1 0.7591 -2.5294 -0.8919 33 1 1.2760 -3.2226 2.4060 34 1 2.1171 -4.1913 4.5082 35 1 4.1074 -5.6353 4.4940 36 1 5.2698 -6.1220 2.3789 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815160837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:14 Heat of formation + Delta-G solvation = -139.064941 kcal Electronic energy + Delta-G solvation = -28590.830191 eV Core-core repulsion = 24098.788443 eV Total energy + Delta-G solvation = -4492.041747 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.51257 -47.70319 -41.55103 -39.33163 -38.42935 -37.68146 -35.78118 -34.66352 -31.82792 -30.77048 -30.02296 -29.35244 -26.69454 -25.95117 -24.41795 -23.83171 -22.61001 -20.44165 -20.24883 -19.18424 -18.59745 -18.23846 -17.06698 -16.81148 -16.57635 -16.23022 -15.78115 -15.22904 -15.01617 -14.92177 -14.68091 -14.46190 -14.31832 -14.10131 -14.02023 -13.96397 -13.91010 -13.76141 -13.09149 -12.66449 -12.37797 -12.25614 -12.04469 -11.64363 -11.50043 -11.38103 -11.29815 -10.95895 -10.77226 -10.41037 -10.38764 -10.21714 -9.11579 -8.95604 -8.69900 -7.99731 -7.80249 -6.43701 -4.00006 0.78157 1.03911 1.76367 1.98516 2.14626 3.10257 3.17892 3.20733 3.26575 3.51337 3.67565 3.82404 4.04927 4.24515 4.35877 4.68992 4.75821 4.92096 4.97287 5.04529 5.17538 5.25271 5.41173 5.47956 5.58720 5.76644 5.94235 6.06623 6.18686 6.26496 6.30254 6.59175 6.68945 6.93384 7.04104 7.33432 7.47353 8.00095 8.35316 9.05550 9.26352 9.79859 10.60992 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.015923 B = 0.004255 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.081189 B = 6578.263056 C = 7398.287382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.437 5.437 3 C -0.306 4.306 4 H 0.099 0.901 5 C 0.033 3.967 6 N -0.880 5.880 7 Si 0.928 3.072 8 H -0.276 1.276 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.429 3.571 12 O -0.575 6.575 13 C 0.094 3.906 14 N -0.509 5.509 15 C 0.118 3.882 16 C -0.116 4.116 17 C -0.096 4.096 18 C -0.115 4.115 19 C -0.092 4.092 20 C 0.072 3.928 21 O -0.310 6.310 22 C 0.454 3.546 23 F -0.129 7.129 24 F -0.172 7.172 25 C 0.481 3.519 26 O -0.459 6.459 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.026 0.974 30 H 0.269 0.731 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.447 -15.269 4.867 16.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.157 5.157 3 C -0.433 4.433 4 H 0.116 0.884 5 C -0.170 4.170 6 N -0.519 5.519 7 Si 0.755 3.245 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.193 1.193 11 C 0.215 3.785 12 O -0.459 6.459 13 C -0.030 4.030 14 N -0.232 5.232 15 C 0.023 3.977 16 C -0.136 4.136 17 C -0.114 4.114 18 C -0.134 4.134 19 C -0.111 4.111 20 C 0.027 3.973 21 O -0.229 6.229 22 C 0.377 3.623 23 F -0.109 7.109 24 F -0.154 7.154 25 C 0.263 3.737 26 O -0.329 6.329 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.049 -14.854 4.192 15.434 hybrid contribution 0.107 0.927 -0.337 0.993 sum 0.058 -13.926 3.854 14.450 Atomic orbital electron populations 1.21581 0.81048 1.00438 1.00760 1.43529 1.05505 1.04450 1.62173 1.19666 1.00768 0.83800 1.39104 0.88374 1.25355 0.96578 1.00213 0.94897 1.69968 1.19110 1.29865 1.32980 0.85890 0.79749 0.80973 0.77936 1.20226 1.20824 1.19300 1.20059 0.88440 0.84650 0.85335 1.90569 1.13485 1.86487 1.55336 1.21781 0.90737 0.85008 1.05511 1.45164 1.43111 1.31667 1.03300 1.18118 0.95398 0.96960 0.87238 1.20777 1.00920 1.01688 0.90204 1.21079 0.96365 0.96405 0.97600 1.20996 0.95911 0.99265 0.97229 1.20519 1.01387 0.99821 0.89377 1.18340 0.93739 1.00307 0.84900 1.86264 1.35002 1.87699 1.13912 1.20680 0.80572 0.82346 0.78663 1.93199 1.74317 1.96409 1.46994 1.93187 1.77053 1.49018 1.96108 1.20633 0.82813 0.85124 0.85177 1.90843 1.54188 1.58867 1.29025 0.92595 0.90201 0.95573 0.92076 0.87101 0.87002 0.84167 0.84515 0.84451 0.83982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.21 8.45 59.85 0.51 2.71 16 2 N -0.44 -10.92 3.01 -122.19 -0.37 -11.29 16 3 C -0.31 -8.41 9.24 -14.93 -0.14 -8.55 16 4 H 0.10 2.88 7.44 -52.49 -0.39 2.49 16 5 C 0.03 0.86 5.04 -17.47 -0.09 0.77 16 6 N -0.88 -22.55 10.83 55.50 0.60 -21.95 16 7 Si 0.93 20.48 29.57 -169.99 -5.03 15.45 16 8 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 C 0.43 10.33 7.70 -10.99 -0.08 10.25 16 12 O -0.57 -16.18 16.14 5.55 0.09 -16.09 16 13 C 0.09 1.70 4.29 -5.20 -0.02 1.68 16 14 N -0.51 -9.24 2.21 -114.52 -0.25 -9.50 16 15 C 0.12 1.88 6.39 -83.49 -0.53 1.35 16 16 C -0.12 -1.52 9.36 -39.46 -0.37 -1.89 16 17 C -0.10 -0.99 10.04 -39.55 -0.40 -1.38 16 18 C -0.12 -1.09 10.04 -39.54 -0.40 -1.49 16 19 C -0.09 -1.05 10.00 -39.50 -0.39 -1.45 16 20 C 0.07 1.09 6.39 -39.10 -0.25 0.84 16 21 O -0.31 -5.10 10.34 -19.69 -0.20 -5.30 16 22 C 0.45 7.65 2.74 36.01 0.10 7.75 16 23 F -0.13 -2.19 17.05 2.25 0.04 -2.15 16 24 F -0.17 -2.58 17.19 2.25 0.04 -2.54 16 25 C 0.48 9.16 7.24 -10.85 -0.08 9.08 16 26 O -0.46 -9.74 16.49 5.55 0.09 -9.65 16 27 H 0.06 1.15 7.83 -51.93 -0.41 0.75 16 28 H 0.08 1.80 6.80 -51.93 -0.35 1.44 16 29 H 0.03 0.44 6.61 -51.93 -0.34 0.10 16 30 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 31 H 0.11 1.62 5.93 -51.93 -0.31 1.31 16 32 H 0.11 1.91 6.75 -51.93 -0.35 1.56 16 33 H 0.14 1.69 6.12 -52.48 -0.32 1.37 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 321.02 15.07 4.84 4.84 Total: -1.00 -33.17 321.02 -5.18 -38.35 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -2.88 Total: 0.16 kcal Atomic # 6 Polarization: 21.82 SS G_CDS: -2.15 Total: 19.67 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.02 Total: -42.73 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.02 Total: -31.04 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.08 Total: -4.70 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.17 -5.18 -38.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815160837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.712 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds