Wall clock time and date at job start Fri Apr 10 2020 18:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37099 * 119.99864 * 2 1 4 4 H 1.08001 * 119.99969 * 204.38990 * 3 2 1 5 5 C 1.38954 * 119.99951 * 24.39109 * 3 2 1 6 6 N 1.31408 * 120.00269 * 12.64658 * 5 3 2 7 7 Si 1.86802 * 119.99683 * 192.64451 * 5 3 2 8 8 H 1.48498 * 109.47306 * 90.00526 * 7 5 3 9 9 H 1.48503 * 109.46988 * 210.00103 * 7 5 3 10 10 H 1.48500 * 109.47581 * 329.99909 * 7 5 3 11 11 C 1.34777 * 119.99976 * 180.02562 * 2 1 3 12 12 O 1.21292 * 119.99425 * 179.72166 * 11 2 1 13 13 C 1.50695 * 119.99900 * 0.02562 * 11 2 1 14 14 N 1.46501 * 109.46973 * 179.97438 * 13 11 2 15 15 C 1.40221 * 120.50724 * 89.99386 * 14 13 11 16 16 C 1.38502 * 120.73872 * 15.46811 * 15 14 13 17 17 C 1.38291 * 119.81480 * 180.02562 * 16 15 14 18 18 C 1.38277 * 120.19640 * 0.03128 * 17 16 15 19 19 C 1.38314 * 120.26053 * 359.96751 * 18 17 16 20 20 C 1.38390 * 119.87309 * 0.02562 * 19 18 17 21 21 O 1.35983 * 120.66526 * 180.10351 * 20 19 18 22 22 C 1.42998 * 116.71797 * 147.15310 * 21 20 19 23 23 F 1.39901 * 109.44294 * 166.44129 * 22 21 20 24 24 F 1.39900 * 109.44436 * 286.37039 * 22 21 20 25 25 C 1.35089 * 120.50842 * 269.72324 * 14 13 11 26 26 O 1.21290 * 120.13539 * 1.66255 * 25 14 13 27 27 H 1.09001 * 109.46758 * 265.86707 * 1 2 3 28 28 H 1.08996 * 109.47175 * 25.86675 * 1 2 3 29 29 H 1.08994 * 109.47092 * 145.86902 * 1 2 3 30 30 H 0.96999 * 120.00411 * 179.97438 * 6 5 3 31 31 H 1.08996 * 109.47007 * 299.99363 * 13 11 2 32 32 H 1.08997 * 109.47319 * 59.99870 * 13 11 2 33 33 H 1.08004 * 120.09633 * 0.03728 * 16 15 14 34 34 H 1.07994 * 119.90064 * 180.02562 * 17 16 15 35 35 H 1.08000 * 119.86607 * 179.97438 * 18 17 16 36 36 H 1.08004 * 120.06131 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2291 -0.3862 5 6 1.5487 2.3370 0.4970 6 7 0.4346 2.2492 1.1881 7 14 2.3236 4.0073 0.1825 8 1 1.7868 4.5720 -1.0817 9 1 2.0034 4.9214 1.3082 10 1 3.7968 3.8566 0.0711 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1671 -0.0056 13 6 1.3854 -2.4722 -0.0017 14 7 2.3374 -3.5858 -0.0027 15 6 2.8001 -4.1278 1.2049 16 6 2.1501 -3.8569 2.3976 17 6 2.6232 -4.4012 3.5775 18 6 3.7423 -5.2134 3.5693 19 6 4.3958 -5.4876 2.3815 20 6 3.9281 -4.9466 1.1967 21 8 4.5569 -5.2073 0.0195 22 6 3.7336 -5.2754 -1.1478 23 9 4.5409 -5.2388 -2.2898 24 9 3.0020 -6.4677 -1.1328 25 6 2.7788 -4.1096 -1.1670 26 8 2.4119 -3.6406 -2.2236 27 1 -0.3633 -0.0741 1.0250 28 1 -0.3633 0.9247 -0.4483 29 1 -0.3633 -0.8506 -0.5766 30 1 0.0146 3.0517 1.5354 31 1 0.7585 -2.5306 0.8880 32 1 0.7591 -2.5294 -0.8919 33 1 1.2760 -3.2226 2.4060 34 1 2.1171 -4.1913 4.5082 35 1 4.1074 -5.6353 4.4940 36 1 5.2698 -6.1220 2.3789 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815160837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:14 Heat of formation + Delta-G solvation = -161.166284 kcal Electronic energy + Delta-G solvation = -28591.788577 eV Core-core repulsion = 24098.788443 eV Total energy + Delta-G solvation = -4493.000133 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.091 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.80431 -48.99139 -42.78823 -40.72024 -40.13256 -38.80569 -37.19344 -36.52505 -33.79358 -31.73025 -31.23373 -30.70180 -28.39495 -27.47532 -26.12167 -25.04711 -23.70187 -21.77538 -21.49210 -20.77277 -19.87001 -19.47168 -19.00282 -18.30360 -17.98243 -17.48089 -17.16380 -16.90605 -16.37040 -16.28609 -16.05391 -15.79307 -15.72770 -15.55680 -15.36283 -15.26622 -15.16143 -15.06155 -14.40435 -14.28671 -13.94987 -13.55353 -13.37266 -13.18868 -13.08296 -12.89534 -12.69033 -12.41334 -12.37679 -12.17636 -12.02969 -11.55458 -11.05606 -10.54092 -9.88035 -9.75480 -9.20928 -8.40919 -6.06246 -0.34232 0.08608 0.47789 0.70298 0.93063 1.33013 1.39299 1.50257 1.85705 1.95703 2.23814 2.53498 2.55434 2.89579 3.00003 3.02377 3.31114 3.72666 3.78790 3.90630 3.97330 4.12491 4.27865 4.34131 4.41819 4.58690 4.73998 4.97309 4.99729 5.07046 5.31411 5.37327 5.38979 5.40960 5.50641 5.81524 5.97956 6.06064 6.39449 7.08030 7.33413 7.88446 8.61464 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.015923 B = 0.004255 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.081189 B = 6578.263056 C = 7398.287382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.451 5.451 3 C -0.347 4.347 4 H 0.063 0.937 5 C 0.008 3.992 6 N -0.886 5.886 7 Si 0.986 3.014 8 H -0.266 1.266 9 H -0.267 1.267 10 H -0.281 1.281 11 C 0.420 3.580 12 O -0.627 6.627 13 C 0.104 3.896 14 N -0.509 5.509 15 C 0.076 3.924 16 C -0.126 4.126 17 C -0.088 4.088 18 C -0.096 4.096 19 C -0.090 4.090 20 C 0.039 3.961 21 O -0.317 6.317 22 C 0.461 3.539 23 F -0.135 7.135 24 F -0.162 7.162 25 C 0.469 3.531 26 O -0.498 6.498 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.277 0.723 31 H 0.150 0.850 32 H 0.124 0.876 33 H 0.147 0.853 34 H 0.174 0.826 35 H 0.183 0.817 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.275 -16.047 7.575 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.169 5.169 3 C -0.475 4.475 4 H 0.081 0.919 5 C -0.196 4.196 6 N -0.523 5.523 7 Si 0.810 3.190 8 H -0.191 1.191 9 H -0.192 1.192 10 H -0.206 1.206 11 C 0.208 3.792 12 O -0.514 6.514 13 C -0.019 4.019 14 N -0.232 5.232 15 C -0.017 4.017 16 C -0.146 4.146 17 C -0.106 4.106 18 C -0.114 4.114 19 C -0.109 4.109 20 C -0.006 4.006 21 O -0.236 6.236 22 C 0.384 3.616 23 F -0.115 7.115 24 F -0.143 7.143 25 C 0.252 3.748 26 O -0.372 6.372 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.168 0.832 32 H 0.141 0.859 33 H 0.165 0.835 34 H 0.191 0.809 35 H 0.200 0.800 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.919 -15.653 6.953 17.152 hybrid contribution 0.376 1.131 -0.991 1.551 sum -0.543 -14.521 5.962 15.707 Atomic orbital electron populations 1.21613 0.78756 1.01266 1.01518 1.43776 1.07006 1.04166 1.61975 1.19506 1.00362 0.86017 1.41573 0.91890 1.25990 0.96962 1.02557 0.94055 1.70002 1.19169 1.31039 1.32126 0.85048 0.78121 0.77252 0.78603 1.19116 1.19190 1.20640 1.20991 0.88222 0.86261 0.83736 1.90523 1.15992 1.87593 1.57313 1.21716 0.90346 0.82037 1.07847 1.45216 1.42811 1.31147 1.04051 1.18529 0.97061 0.98888 0.87193 1.21083 1.01212 1.01985 0.90271 1.21589 0.96284 0.94997 0.97767 1.21578 0.94507 0.97331 0.97979 1.21003 1.01951 0.99337 0.88600 1.18909 0.94541 1.01807 0.85301 1.86255 1.35131 1.87957 1.14269 1.20379 0.80278 0.82033 0.78941 1.93177 1.74393 1.96434 1.47526 1.93198 1.76855 1.48154 1.96091 1.21082 0.82903 0.85705 0.85139 1.90801 1.55825 1.60382 1.30160 0.92205 0.92057 0.91520 0.91318 0.83234 0.85860 0.83530 0.80896 0.79968 0.81546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.58 8.45 127.77 1.08 5.66 16 2 N -0.45 -22.92 3.01 -658.89 -1.98 -24.90 16 3 C -0.35 -19.72 9.24 84.04 0.78 -18.94 16 4 H 0.06 3.94 7.44 -2.91 -0.02 3.92 16 5 C 0.01 0.39 5.04 84.93 0.43 0.82 16 6 N -0.89 -44.70 10.83 21.66 0.23 -44.47 16 7 Si 0.99 42.03 29.57 68.60 2.03 44.06 16 8 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 9 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 C 0.42 20.74 7.70 87.66 0.67 21.41 16 12 O -0.63 -36.95 16.14 -3.07 -0.05 -37.00 16 13 C 0.10 3.77 4.29 85.63 0.37 4.14 16 14 N -0.51 -18.72 2.21 -634.44 -1.40 -20.12 16 15 C 0.08 2.40 6.39 38.14 0.24 2.64 16 16 C -0.13 -3.04 9.36 22.35 0.21 -2.83 16 17 C -0.09 -1.45 10.04 22.29 0.22 -1.23 16 18 C -0.10 -1.37 10.04 22.30 0.22 -1.15 16 19 C -0.09 -1.81 10.00 22.32 0.22 -1.59 16 20 C 0.04 1.14 6.39 22.58 0.14 1.29 16 21 O -0.32 -10.56 10.34 -93.36 -0.97 -11.53 16 22 C 0.46 15.97 2.74 71.24 0.20 16.16 16 23 F -0.13 -4.78 17.05 44.97 0.77 -4.02 16 24 F -0.16 -4.89 17.19 44.97 0.77 -4.12 16 25 C 0.47 18.52 7.24 87.61 0.63 19.15 16 26 O -0.50 -22.14 16.49 -3.06 -0.05 -22.19 16 27 H 0.06 2.39 7.83 -2.39 -0.02 2.37 16 28 H 0.06 2.73 6.80 -2.39 -0.02 2.72 16 29 H 0.07 2.16 6.61 -2.39 -0.02 2.15 16 30 H 0.28 13.02 8.31 -92.71 -0.77 12.25 16 31 H 0.15 4.13 5.93 -2.39 -0.01 4.11 16 32 H 0.12 4.15 6.75 -2.39 -0.02 4.14 16 33 H 0.15 3.21 6.12 -2.91 -0.02 3.19 16 34 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 35 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 36 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -76.77 321.02 5.94 -70.83 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.16 Total: 7.92 kcal Atomic # 6 Polarization: 40.11 SS G_CDS: 5.42 Total: 45.53 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -3.15 Total: -89.49 kcal Atomic # 8 Polarization: -69.66 SS G_CDS: -1.07 Total: -70.72 kcal Atomic # 9 Polarization: -9.67 SS G_CDS: 1.54 Total: -8.13 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -76.77 5.94 -70.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815160837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.336 kcal (2) G-P(sol) polarization free energy of solvation -76.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds