Wall clock time and date at job start Fri Apr 10 2020 18:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21277 * 120.00103 * 2 1 4 4 N 1.34782 * 119.99711 * 179.97438 * 2 1 3 5 5 C 1.39437 * 119.99678 * 185.28008 * 4 2 1 6 6 C 1.39130 * 119.92865 * 33.53877 * 5 4 2 7 7 C 1.37674 * 120.07612 * 180.27610 * 6 5 4 8 8 C 1.39752 * 119.92173 * 359.52075 * 7 6 5 9 9 C 1.47602 * 120.07259 * 180.23429 * 8 7 6 10 10 O 1.21582 * 119.99703 * 180.25201 * 9 8 7 11 11 N 1.34775 * 120.00137 * 0.24563 * 9 8 7 12 12 S 1.65592 * 120.00223 * 180.02562 * 11 9 8 13 13 O 1.42097 * 104.27725 * 181.07214 * 12 11 9 14 14 O 1.42100 * 104.27686 * 308.93344 * 12 11 9 15 15 C 1.81406 * 104.45035 * 65.00284 * 12 11 9 16 16 C 1.50690 * 109.47282 * 179.97438 * 15 12 11 17 17 H 1.08004 * 119.99968 * 0.02562 * 16 15 12 18 18 C 1.37878 * 120.00247 * 179.97438 * 16 15 12 19 19 N 1.31519 * 119.99508 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00360 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46854 * 90.00354 * 20 18 16 22 22 H 1.48504 * 109.47440 * 210.00095 * 20 18 16 23 23 H 1.48501 * 109.47221 * 330.00464 * 20 18 16 24 24 C 1.39750 * 119.85540 * 0.48141 * 8 7 6 25 25 C 1.37670 * 119.92215 * 359.75042 * 24 8 7 26 26 H 1.09000 * 109.47158 * 240.00397 * 1 2 3 27 27 H 1.09002 * 109.47066 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47158 * 120.00472 * 1 2 3 29 29 H 0.96994 * 119.99988 * 5.27770 * 4 2 1 30 30 H 1.07998 * 119.96654 * 0.02562 * 6 5 4 31 31 H 1.08000 * 120.04203 * 179.72964 * 7 6 5 32 32 H 0.97007 * 119.99601 * 0.02562 * 11 9 8 33 33 H 1.09002 * 109.46838 * 300.00536 * 15 12 11 34 34 H 1.09003 * 109.46773 * 59.99716 * 15 12 11 35 35 H 0.97007 * 119.99457 * 179.97438 * 19 18 16 36 36 H 1.07997 * 120.03939 * 179.72625 * 24 8 7 37 37 H 1.08003 * 119.96370 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5708 -1.1698 0.1117 6 6 4.2078 -0.1974 0.8761 7 6 5.5803 -0.1936 0.9833 8 6 6.3332 -1.1740 0.3313 9 6 7.8046 -1.1761 0.4482 10 8 8.4585 -2.0270 -0.1234 11 7 8.4232 -0.2349 1.1883 12 16 10.0740 -0.2370 1.3190 13 8 10.3589 0.8587 2.1778 14 8 10.3938 -1.5683 1.6991 15 6 10.6616 0.1033 -0.3632 16 6 12.1682 0.1277 -0.3737 17 1 12.7175 -0.0447 0.5401 18 6 12.8457 0.3691 -1.5501 19 7 12.1768 0.5785 -2.6629 20 14 14.7133 0.4000 -1.5629 21 1 15.2291 -0.9655 -1.8363 22 1 15.1858 1.3286 -2.6212 23 1 15.2099 0.8614 -0.2417 24 6 5.6902 -2.1492 -0.4359 25 6 4.3177 -2.1443 -0.5427 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5139 -0.8899 29 1 1.6989 -2.0055 -0.0764 30 1 3.6252 0.5577 1.3828 31 1 6.0745 0.5640 1.5734 32 1 7.9013 0.4437 1.6446 33 1 10.3056 -0.6761 -1.0370 34 1 10.2806 1.0700 -0.6925 35 1 12.6535 0.7487 -3.4905 36 1 6.2694 -2.9056 -0.9446 37 1 3.8201 -2.8980 -1.1351 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821582383.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:41 Heat of formation + Delta-G solvation = -119.039182 kcal Electronic energy + Delta-G solvation = -24595.490252 eV Core-core repulsion = 20658.157273 eV Total energy + Delta-G solvation = -3937.332979 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.01110 -39.96238 -38.21057 -36.21689 -35.19134 -35.14754 -34.17812 -33.32291 -31.34593 -31.18992 -29.17209 -29.00080 -24.41544 -23.49155 -23.21243 -21.62703 -20.67939 -19.32912 -18.30759 -18.06268 -17.39559 -17.15702 -16.44111 -16.03950 -15.65817 -15.30923 -14.87128 -14.84358 -14.71344 -14.40846 -14.16912 -14.01512 -13.73692 -13.33803 -13.08611 -12.78408 -12.62064 -12.50882 -12.13239 -11.87294 -11.56863 -11.43832 -11.26738 -11.16848 -10.88879 -10.80746 -10.62290 -10.46813 -10.37456 -10.04230 -9.78475 -9.25545 -9.14063 -8.67921 -8.50363 -6.30001 -4.41148 0.50503 1.06608 1.15227 2.01780 2.54354 2.69896 3.19442 3.24710 3.29998 3.35281 3.65846 4.16723 4.24104 4.38648 4.52191 4.64627 4.69585 4.70055 4.79363 5.01022 5.02012 5.08755 5.14525 5.23373 5.28216 5.34283 5.71261 5.85899 5.92849 6.10575 6.12425 6.60722 6.64522 6.80443 6.85858 7.03095 7.44747 7.59350 7.75127 7.79804 8.60008 9.25951 10.81805 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.023700 B = 0.002682 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.174054 B =10435.571493 C =10686.481685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.518 6.518 4 N -0.675 5.675 5 C 0.170 3.830 6 C -0.132 4.132 7 C -0.059 4.059 8 C -0.151 4.151 9 C 0.580 3.420 10 O -0.485 6.485 11 N -1.058 6.058 12 S 2.555 3.445 13 O -0.968 6.968 14 O -0.952 6.952 15 C -0.404 4.404 16 C -0.534 4.534 17 H 0.071 0.929 18 C 0.077 3.923 19 N -0.877 5.877 20 Si 0.907 3.093 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.266 1.266 24 C -0.032 4.032 25 C -0.155 4.155 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.414 0.586 30 H 0.141 0.859 31 H 0.134 0.866 32 H 0.422 0.578 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.269 0.731 36 H 0.146 0.854 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.932 -3.701 4.030 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.297 3.703 3 O -0.393 6.393 4 N -0.321 5.321 5 C 0.075 3.925 6 C -0.152 4.152 7 C -0.078 4.078 8 C -0.157 4.157 9 C 0.367 3.633 10 O -0.357 6.357 11 N -0.817 5.817 12 S 2.657 3.343 13 O -0.959 6.959 14 O -0.942 6.942 15 C -0.541 4.541 16 C -0.574 4.574 17 H 0.089 0.911 18 C -0.130 4.130 19 N -0.513 5.513 20 Si 0.733 3.267 21 H -0.198 1.198 22 H -0.206 1.206 23 H -0.191 1.191 24 C -0.052 4.052 25 C -0.176 4.176 26 H 0.111 0.889 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.250 0.750 30 H 0.158 0.842 31 H 0.152 0.848 32 H 0.257 0.743 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.164 0.836 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.668 -3.670 4.287 25.306 hybrid contribution 0.119 0.149 -0.535 0.568 sum -24.550 -3.521 3.752 25.083 Atomic orbital electron populations 1.21938 0.90425 1.06215 1.04676 1.21088 0.91035 0.83075 0.75097 1.90788 1.70563 1.31138 1.46782 1.43582 1.05284 1.10226 1.72996 1.17944 0.82794 0.96597 0.95145 1.21025 0.94427 1.00020 0.99716 1.21237 0.93525 0.96449 0.96637 1.19934 0.92596 0.99318 1.03853 1.18039 0.88366 0.79848 0.77016 1.90983 1.66622 1.35030 1.43054 1.55440 1.31295 1.37655 1.57344 1.07107 0.71602 0.74517 0.81037 1.93520 1.81342 1.55169 1.65866 1.93528 1.80451 1.37184 1.83025 1.27602 1.06736 1.07415 1.12311 1.20285 0.86942 1.53546 0.96610 0.91112 1.24927 0.99715 0.93505 0.94829 1.69967 1.36376 1.45481 0.99449 0.86333 0.83423 0.78489 0.78467 1.19841 1.20612 1.19071 1.21147 0.93500 0.96343 0.94194 1.20853 0.93740 1.01072 1.01919 0.88880 0.88407 0.88977 0.75020 0.84173 0.84820 0.74253 0.88294 0.89625 0.92163 0.83621 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.49 10.32 36.01 0.37 -0.12 16 2 C 0.51 3.76 7.67 -10.98 -0.08 3.68 16 3 O -0.52 -6.32 14.76 5.56 0.08 -6.24 16 4 N -0.68 -4.17 5.32 -9.86 -0.05 -4.22 16 5 C 0.17 1.60 6.27 -83.74 -0.53 1.07 16 6 C -0.13 -1.43 8.63 -39.46 -0.34 -1.77 16 7 C -0.06 -0.68 9.53 -39.22 -0.37 -1.05 16 8 C -0.15 -2.07 5.88 -104.95 -0.62 -2.69 16 9 C 0.58 10.14 7.50 -12.44 -0.09 10.05 16 10 O -0.48 -10.26 14.44 -11.84 -0.17 -10.44 16 11 N -1.06 -17.90 5.55 30.47 0.17 -17.73 16 12 S 2.55 56.57 5.03 -107.50 -0.54 56.03 16 13 O -0.97 -22.47 18.08 -57.54 -1.04 -23.51 16 14 O -0.95 -23.99 17.04 -64.79 -1.10 -25.09 16 15 C -0.40 -10.25 5.64 36.00 0.20 -10.05 16 16 C -0.53 -15.19 9.13 -34.44 -0.31 -15.50 16 17 H 0.07 1.96 7.71 -52.48 -0.40 1.55 16 18 C 0.08 2.17 5.46 -17.82 -0.10 2.08 16 19 N -0.88 -25.46 13.29 55.43 0.74 -24.73 16 20 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 C -0.03 -0.39 9.58 -39.22 -0.38 -0.76 16 25 C -0.16 -1.42 9.94 -39.46 -0.39 -1.81 16 26 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 27 H 0.10 0.33 8.12 -51.93 -0.42 -0.09 16 28 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 29 H 0.41 0.98 8.81 -40.82 -0.36 0.62 16 30 H 0.14 1.52 6.41 -52.49 -0.34 1.18 16 31 H 0.13 1.24 6.39 -52.49 -0.34 0.90 16 32 H 0.42 5.37 6.81 -34.47 -0.23 5.13 16 33 H 0.10 2.62 7.19 -51.92 -0.37 2.25 16 34 H 0.09 2.10 8.14 -51.92 -0.42 1.68 16 35 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.15 1.71 7.64 -52.49 -0.40 1.31 16 37 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 339.79 15.07 5.12 5.12 Total: -1.00 -39.65 339.79 -8.15 -47.80 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -3.69 Total: 3.47 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -2.64 Total: -16.87 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.85 Total: -46.68 kcal Atomic # 8 Polarization: -63.05 SS G_CDS: -2.23 Total: -65.28 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 56.57 SS G_CDS: -0.54 Total: 56.03 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -39.65 -8.15 -47.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582383.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.240 kcal (2) G-P(sol) polarization free energy of solvation -39.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds