Wall clock time and date at job start Fri Apr 10 2020 18:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86803 * 120.00077 * 2 1 4 4 H 1.48500 * 109.46860 * 269.99888 * 3 2 1 5 5 H 1.48495 * 109.47116 * 30.00137 * 3 2 1 6 6 H 1.48498 * 109.47016 * 149.99939 * 3 2 1 7 7 C 1.38652 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00317 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00120 * 0.02562 * 7 2 1 10 10 C 1.35743 * 117.00222 * 178.89754 * 9 7 2 11 11 C 1.38951 * 120.03692 * 185.52114 * 10 9 7 12 12 C 1.38123 * 120.07413 * 180.23305 * 11 10 9 13 13 C 1.38197 * 120.13744 * 359.48519 * 12 11 10 14 14 C 1.38923 * 120.06768 * 0.25894 * 13 12 11 15 15 N 1.39920 * 120.03494 * 180.02562 * 14 13 12 16 16 C 1.34772 * 120.00644 * 333.27518 * 15 14 13 17 17 O 1.21287 * 119.99577 * 4.04651 * 16 15 14 18 18 C 1.50700 * 120.00685 * 184.04372 * 16 15 14 19 19 S 1.81397 * 115.54813 * 305.85977 * 18 16 15 20 20 N 1.65603 * 104.45019 * 292.83430 * 19 18 16 21 21 O 1.42098 * 110.54507 * 44.45960 * 19 18 16 22 22 O 1.42102 * 110.54184 * 181.20901 * 19 18 16 23 23 C 1.52995 * 117.49976 * 160.18755 * 18 16 15 24 24 C 1.52998 * 117.49716 * 91.52697 * 18 16 15 25 25 C 1.38733 * 120.03417 * 5.24159 * 10 9 7 26 26 H 0.97003 * 119.99504 * 359.97438 * 1 2 3 27 27 H 1.08010 * 119.96320 * 359.97438 * 11 10 9 28 28 H 1.08000 * 119.93251 * 179.76888 * 12 11 10 29 29 H 1.08006 * 119.96770 * 180.23232 * 13 12 11 30 30 H 0.97004 * 119.99920 * 153.28146 * 15 14 13 31 31 H 0.96998 * 120.00081 * 154.52473 * 20 19 18 32 32 H 0.96999 * 119.99791 * 334.51665 * 20 19 18 33 33 H 1.08996 * 117.50397 * 0.02562 * 23 18 16 34 34 H 1.09002 * 117.49613 * 145.02298 * 23 18 16 35 35 H 1.09000 * 117.49637 * 214.98040 * 24 18 16 36 36 H 1.09002 * 117.49913 * 359.97438 * 24 18 16 37 37 H 1.08001 * 120.06693 * 0.04224 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0737 -3.5068 -0.0222 11 6 1.4464 -4.7411 -0.1393 12 6 2.1974 -5.9002 -0.1577 13 6 3.5751 -5.8359 -0.0704 14 6 4.2086 -4.6046 0.0416 15 7 5.6036 -4.5402 0.1294 16 6 6.2958 -5.5800 0.6354 17 8 5.7173 -6.5996 0.9465 18 6 7.7885 -5.4759 0.8147 19 16 8.7234 -5.0055 -0.6668 20 7 8.5495 -6.2945 -1.6918 21 8 8.0817 -3.9322 -1.3416 22 8 10.1159 -4.9663 -0.3861 23 6 8.4526 -6.4504 1.7894 24 6 8.3045 -4.9738 2.1647 25 6 3.4566 -3.4388 0.0657 26 1 -0.4849 0.8401 0.0004 27 1 0.3701 -4.7945 -0.2119 28 1 1.7072 -6.8586 -0.2451 29 1 4.1598 -6.7438 -0.0888 30 1 6.0725 -3.7471 -0.1739 31 1 8.6257 -6.1658 -2.6502 32 1 8.3716 -7.1783 -1.3338 33 1 7.8100 -7.1672 2.3007 34 1 9.4515 -6.8086 1.5405 35 1 9.2060 -4.3612 2.1627 36 1 7.5643 -4.7184 2.9231 37 1 3.9467 -2.4804 0.1529 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845221126.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:58 Heat of formation + Delta-G solvation = -67.114778 kcal Electronic energy + Delta-G solvation = -25342.089005 eV Core-core repulsion = 21407.007637 eV Total energy + Delta-G solvation = -3935.081367 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.66994 -38.90140 -37.77653 -37.02282 -36.40866 -36.14655 -34.39133 -33.52835 -32.25567 -29.57438 -28.72165 -25.72059 -25.11762 -23.24322 -22.13350 -21.86132 -20.72682 -19.71990 -18.80342 -17.95012 -17.74797 -17.49971 -16.81107 -16.52843 -15.90295 -15.64297 -15.15648 -14.94369 -14.81475 -14.31259 -14.01426 -13.96299 -13.60906 -13.04194 -12.62004 -12.57277 -12.46737 -12.43060 -12.32385 -12.15021 -11.88454 -11.71997 -11.62260 -11.26454 -11.11080 -11.01318 -10.84168 -10.74883 -10.45802 -10.04823 -9.64448 -9.45771 -8.82605 -7.78230 -7.20911 -6.46313 -4.05897 -0.27669 1.70429 2.17542 2.34678 2.57790 2.71808 2.95762 3.12659 3.13772 3.17701 3.23506 3.60834 3.95503 4.05653 4.20823 4.41745 4.56546 4.87211 4.95356 5.09358 5.23795 5.24013 5.46823 5.61916 5.65165 5.95930 5.98806 6.15962 6.21222 6.55898 6.69329 6.85132 6.91518 7.09164 7.26327 7.39643 7.57291 7.74399 7.96943 8.02568 8.99146 9.67953 10.71561 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.014659 B = 0.003643 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.685416 B = 7684.512665 C = 8815.331853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.394 4.394 8 H 0.091 0.909 9 O -0.175 6.175 10 C 0.170 3.830 11 C -0.199 4.199 12 C -0.063 4.063 13 C -0.219 4.219 14 C 0.177 3.823 15 N -0.654 5.654 16 C 0.564 3.436 17 O -0.500 6.500 18 C -0.696 4.696 19 S 2.656 3.344 20 N -1.244 6.244 21 O -0.947 6.947 22 O -0.948 6.948 23 C -0.092 4.092 24 C -0.099 4.099 25 C -0.257 4.257 26 H 0.270 0.730 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.136 0.864 30 H 0.416 0.584 31 H 0.423 0.577 32 H 0.417 0.583 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.261 -12.066 0.998 21.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.470 4.470 8 H 0.109 0.891 9 O -0.078 6.078 10 C 0.115 3.885 11 C -0.218 4.218 12 C -0.082 4.082 13 C -0.239 4.239 14 C 0.084 3.916 15 N -0.298 5.298 16 C 0.347 3.653 17 O -0.375 6.375 18 C -0.787 4.787 19 S 2.742 3.258 20 N -0.918 5.918 21 O -0.936 6.936 22 O -0.937 6.937 23 C -0.130 4.130 24 C -0.138 4.138 25 C -0.279 4.279 26 H 0.080 0.920 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.154 0.846 30 H 0.254 0.746 31 H 0.254 0.746 32 H 0.244 0.756 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 17.945 -11.584 1.201 21.393 hybrid contribution 0.187 0.606 -0.152 0.652 sum 18.132 -10.978 1.049 21.222 Atomic orbital electron populations 1.70041 1.05944 1.27690 1.45986 1.25272 0.95837 0.98796 0.96499 0.85722 0.78891 0.80086 0.78793 1.19795 1.20248 1.19220 1.21308 0.91758 0.80824 1.53093 0.89115 1.83999 1.33610 1.11206 1.78952 1.19023 0.89228 0.88110 0.92129 1.20291 0.99886 0.90130 1.11538 1.20574 0.93123 0.96869 0.97673 1.20964 0.94758 0.96601 1.11581 1.17462 0.80131 0.94584 0.99461 1.43513 1.06611 1.19183 1.60513 1.18266 0.84926 0.83918 0.78171 1.90659 1.68681 1.29239 1.48887 1.32177 1.06887 1.23349 1.16250 1.03638 0.74682 0.73280 0.74171 1.53013 1.92444 1.25448 1.20909 1.93624 1.77226 1.52631 1.70145 1.93637 1.29212 1.85869 1.84972 1.23015 1.01085 0.93453 0.95482 1.23049 1.02755 0.98369 0.89591 1.20780 0.94024 0.97327 1.15736 0.91995 0.86324 0.86532 0.84649 0.74625 0.74628 0.75604 0.85456 0.85831 0.85811 0.85895 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.15 13.67 55.48 0.76 -24.39 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 3 Si 0.94 20.46 29.55 -169.99 -5.02 15.44 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.39 -10.94 9.49 30.89 0.29 -10.65 16 8 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 9 O -0.17 -4.96 9.76 0.06 0.00 -4.95 16 10 C 0.17 4.11 6.65 -39.13 -0.26 3.85 16 11 C -0.20 -4.23 9.99 -39.36 -0.39 -4.63 16 12 C -0.06 -1.18 10.03 -39.64 -0.40 -1.58 16 13 C -0.22 -4.13 8.78 -39.34 -0.35 -4.48 16 14 C 0.18 3.42 6.43 -83.72 -0.54 2.88 16 15 N -0.65 -10.29 5.25 -9.88 -0.05 -10.35 16 16 C 0.56 7.74 7.09 -10.99 -0.08 7.66 16 17 O -0.50 -7.99 13.42 5.55 0.07 -7.92 16 18 C -0.70 -6.55 2.58 -91.78 -0.24 -6.79 16 19 S 2.66 25.44 5.93 -107.50 -0.64 24.80 16 20 N -1.24 -8.66 9.37 60.35 0.57 -8.09 16 21 O -0.95 -12.28 16.43 -57.54 -0.95 -13.22 16 22 O -0.95 -10.71 17.96 -57.54 -1.03 -11.75 16 23 C -0.09 -0.62 9.74 -26.70 -0.26 -0.88 16 24 C -0.10 -0.71 9.96 -26.70 -0.27 -0.98 16 25 C -0.26 -5.63 9.05 -39.21 -0.35 -5.99 16 26 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.12 2.41 8.06 -52.48 -0.42 1.98 16 28 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.14 2.44 5.60 -52.48 -0.29 2.15 16 30 H 0.42 6.02 7.19 -40.82 -0.29 5.72 16 31 H 0.42 2.44 8.96 -34.47 -0.31 2.13 16 32 H 0.42 2.07 8.94 -34.47 -0.31 1.76 16 33 H 0.13 0.90 7.81 -51.93 -0.41 0.49 16 34 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.13 2.84 5.65 -52.49 -0.30 2.55 16 LS Contribution 336.13 15.07 5.07 5.07 Total: -1.00 -36.52 336.13 -7.59 -44.10 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -3.43 Total: 11.83 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -2.93 Total: -20.57 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 1.27 Total: -42.83 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -1.90 Total: -37.84 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 25.44 SS G_CDS: -0.64 Total: 24.80 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.52 -7.59 -44.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845221126.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.011 kcal (2) G-P(sol) polarization free energy of solvation -36.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds