Wall clock time and date at job start Fri Apr 10 2020 18:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86803 * 120.00077 * 2 1 4 4 H 1.48500 * 109.46860 * 269.99888 * 3 2 1 5 5 H 1.48495 * 109.47116 * 30.00137 * 3 2 1 6 6 H 1.48498 * 109.47016 * 149.99939 * 3 2 1 7 7 C 1.38652 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00317 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00120 * 0.02562 * 7 2 1 10 10 C 1.35743 * 117.00222 * 178.89754 * 9 7 2 11 11 C 1.38951 * 120.03692 * 185.52114 * 10 9 7 12 12 C 1.38123 * 120.07413 * 180.23305 * 11 10 9 13 13 C 1.38197 * 120.13744 * 359.48519 * 12 11 10 14 14 C 1.38923 * 120.06768 * 0.25894 * 13 12 11 15 15 N 1.39920 * 120.03494 * 180.02562 * 14 13 12 16 16 C 1.34772 * 120.00644 * 333.27518 * 15 14 13 17 17 O 1.21287 * 119.99577 * 4.04651 * 16 15 14 18 18 C 1.50700 * 120.00685 * 184.04372 * 16 15 14 19 19 S 1.81397 * 115.54813 * 305.85977 * 18 16 15 20 20 N 1.65603 * 104.45019 * 292.83430 * 19 18 16 21 21 O 1.42098 * 110.54507 * 44.45960 * 19 18 16 22 22 O 1.42102 * 110.54184 * 181.20901 * 19 18 16 23 23 C 1.52995 * 117.49976 * 160.18755 * 18 16 15 24 24 C 1.52998 * 117.49716 * 91.52697 * 18 16 15 25 25 C 1.38733 * 120.03417 * 5.24159 * 10 9 7 26 26 H 0.97003 * 119.99504 * 359.97438 * 1 2 3 27 27 H 1.08010 * 119.96320 * 359.97438 * 11 10 9 28 28 H 1.08000 * 119.93251 * 179.76888 * 12 11 10 29 29 H 1.08006 * 119.96770 * 180.23232 * 13 12 11 30 30 H 0.97004 * 119.99920 * 153.28146 * 15 14 13 31 31 H 0.96998 * 120.00081 * 154.52473 * 20 19 18 32 32 H 0.96999 * 119.99791 * 334.51665 * 20 19 18 33 33 H 1.08996 * 117.50397 * 0.02562 * 23 18 16 34 34 H 1.09002 * 117.49613 * 145.02298 * 23 18 16 35 35 H 1.09000 * 117.49637 * 214.98040 * 24 18 16 36 36 H 1.09002 * 117.49913 * 359.97438 * 24 18 16 37 37 H 1.08001 * 120.06693 * 0.04224 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0737 -3.5068 -0.0222 11 6 1.4464 -4.7411 -0.1393 12 6 2.1974 -5.9002 -0.1577 13 6 3.5751 -5.8359 -0.0704 14 6 4.2086 -4.6046 0.0416 15 7 5.6036 -4.5402 0.1294 16 6 6.2958 -5.5800 0.6354 17 8 5.7173 -6.5996 0.9465 18 6 7.7885 -5.4759 0.8147 19 16 8.7234 -5.0055 -0.6668 20 7 8.5495 -6.2945 -1.6918 21 8 8.0817 -3.9322 -1.3416 22 8 10.1159 -4.9663 -0.3861 23 6 8.4526 -6.4504 1.7894 24 6 8.3045 -4.9738 2.1647 25 6 3.4566 -3.4388 0.0657 26 1 -0.4849 0.8401 0.0004 27 1 0.3701 -4.7945 -0.2119 28 1 1.7072 -6.8586 -0.2451 29 1 4.1598 -6.7438 -0.0888 30 1 6.0725 -3.7471 -0.1739 31 1 8.6257 -6.1658 -2.6502 32 1 8.3716 -7.1783 -1.3338 33 1 7.8100 -7.1672 2.3007 34 1 9.4515 -6.8086 1.5405 35 1 9.2060 -4.3612 2.1627 36 1 7.5643 -4.7184 2.9231 37 1 3.9467 -2.4804 0.1529 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845221126.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:57 Heat of formation + Delta-G solvation = -97.272677 kcal Electronic energy + Delta-G solvation = -25343.396750 eV Core-core repulsion = 21407.007637 eV Total energy + Delta-G solvation = -3936.389112 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.90758 -40.53852 -38.74028 -38.26649 -37.34242 -37.22070 -35.80101 -34.25124 -34.14551 -31.15006 -30.38678 -27.44567 -26.40409 -23.84021 -23.57820 -23.29330 -21.99900 -20.64069 -20.05663 -19.47035 -19.06782 -18.44459 -17.69534 -17.53227 -17.14109 -16.79829 -16.69243 -16.29563 -16.01729 -15.73503 -15.56523 -15.49395 -14.91356 -14.61792 -14.18173 -13.59943 -13.47246 -13.40287 -13.36913 -13.29697 -13.20883 -12.85265 -12.72015 -12.67522 -12.51065 -12.30613 -12.12697 -11.80515 -11.52331 -11.40976 -11.36077 -10.91058 -10.74698 -9.40612 -8.92988 -8.48130 -6.16788 -1.04502 0.29330 0.66086 1.19291 1.35179 1.44600 1.51032 1.52207 1.85181 2.10916 2.16864 2.49994 2.80429 2.80826 3.13142 3.28830 3.45993 3.51888 3.64098 4.07224 4.27108 4.33068 4.41488 4.47960 4.59574 4.60033 4.74668 4.95877 5.00138 5.09384 5.14681 5.29573 5.36746 5.61635 5.65576 5.99886 6.12890 6.23465 6.25061 6.77655 6.96325 7.74450 8.74673 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.014659 B = 0.003643 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.685416 B = 7684.512665 C = 8815.331853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.019 4.019 3 Si 1.016 2.984 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.253 1.253 7 C -0.416 4.416 8 H 0.101 0.899 9 O -0.224 6.224 10 C 0.137 3.863 11 C -0.212 4.212 12 C -0.049 4.049 13 C -0.210 4.210 14 C 0.181 3.819 15 N -0.658 5.658 16 C 0.567 3.433 17 O -0.520 6.520 18 C -0.703 4.703 19 S 2.677 3.323 20 N -1.236 6.236 21 O -0.985 6.985 22 O -0.962 6.962 23 C -0.075 4.075 24 C -0.098 4.098 25 C -0.266 4.266 26 H 0.273 0.727 27 H 0.121 0.879 28 H 0.159 0.841 29 H 0.154 0.846 30 H 0.422 0.578 31 H 0.429 0.571 32 H 0.428 0.572 33 H 0.126 0.874 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.121 0.879 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.214 -13.684 1.405 25.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.217 4.217 3 Si 0.835 3.165 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.492 4.492 8 H 0.118 0.882 9 O -0.130 6.130 10 C 0.085 3.915 11 C -0.232 4.232 12 C -0.068 4.068 13 C -0.231 4.231 14 C 0.086 3.914 15 N -0.303 5.303 16 C 0.353 3.647 17 O -0.396 6.396 18 C -0.794 4.794 19 S 2.764 3.236 20 N -0.914 5.914 21 O -0.974 6.974 22 O -0.951 6.951 23 C -0.113 4.113 24 C -0.136 4.136 25 C -0.288 4.288 26 H 0.082 0.918 27 H 0.139 0.861 28 H 0.176 0.824 29 H 0.171 0.829 30 H 0.260 0.740 31 H 0.262 0.738 32 H 0.257 0.743 33 H 0.145 0.855 34 H 0.171 0.829 35 H 0.165 0.835 36 H 0.140 0.860 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 20.958 -13.262 1.601 24.853 hybrid contribution -0.600 0.758 -0.247 0.998 sum 20.357 -12.504 1.354 23.929 Atomic orbital electron populations 1.70180 1.07960 1.28856 1.48550 1.26543 0.96825 1.02596 0.95738 0.84628 0.77873 0.74691 0.79301 1.18839 1.19471 1.17645 1.21804 0.92492 0.81406 1.53483 0.88160 1.83965 1.35170 1.12294 1.81608 1.19562 0.90417 0.88091 0.93412 1.20542 1.00477 0.90126 1.12032 1.21012 0.93019 0.97529 0.95211 1.21351 0.95142 0.96925 1.09652 1.17543 0.81998 0.93867 0.97952 1.43603 1.05218 1.20371 1.61072 1.18794 0.86532 0.82713 0.76642 1.90632 1.69793 1.29782 1.49373 1.31974 1.03347 1.26743 1.17358 1.02839 0.73989 0.72955 0.73865 1.52789 1.92163 1.25395 1.21076 1.93581 1.77793 1.54778 1.71232 1.93623 1.29965 1.86270 1.85275 1.23303 1.01956 0.93028 0.93004 1.23357 1.03316 0.99419 0.87550 1.20804 0.93505 0.98227 1.16242 0.91761 0.86087 0.82389 0.82910 0.73974 0.73819 0.74268 0.85533 0.82892 0.83521 0.86045 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.05 13.67 21.61 0.30 -55.76 16 2 C -0.02 -1.08 5.49 84.83 0.47 -0.61 16 3 Si 1.02 42.76 29.55 68.60 2.03 44.79 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 7 C -0.42 -24.18 9.49 67.92 0.64 -23.54 16 8 H 0.10 5.36 5.20 -2.91 -0.02 5.35 16 9 O -0.22 -13.47 9.76 -22.70 -0.22 -13.69 16 10 C 0.14 6.87 6.65 22.56 0.15 7.02 16 11 C -0.21 -9.12 9.99 22.41 0.22 -8.89 16 12 C -0.05 -1.74 10.03 22.23 0.22 -1.51 16 13 C -0.21 -7.52 8.78 22.42 0.20 -7.32 16 14 C 0.18 6.85 6.43 38.14 0.25 7.09 16 15 N -0.66 -19.89 5.25 -303.56 -1.59 -21.48 16 16 C 0.57 14.34 7.09 87.66 0.62 14.96 16 17 O -0.52 -15.26 13.42 -3.05 -0.04 -15.30 16 18 C -0.70 -11.34 2.58 -11.54 -0.03 -11.37 16 19 S 2.68 45.44 5.93 -56.49 -0.33 45.11 16 20 N -1.24 -14.20 9.37 37.02 0.35 -13.86 16 21 O -0.98 -24.40 16.43 -127.65 -2.10 -26.50 16 22 O -0.96 -19.23 17.96 -127.65 -2.29 -21.53 16 23 C -0.08 -0.73 9.74 30.62 0.30 -0.43 16 24 C -0.10 -1.11 9.96 30.62 0.30 -0.80 16 25 C -0.27 -11.91 9.05 22.51 0.20 -11.71 16 26 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 27 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 28 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 29 H 0.15 5.03 5.60 -2.91 -0.02 5.01 16 30 H 0.42 11.89 7.19 -92.71 -0.67 11.22 16 31 H 0.43 4.06 8.96 -96.75 -0.87 3.20 16 32 H 0.43 2.99 8.94 -96.75 -0.86 2.12 16 33 H 0.13 1.34 7.81 -2.39 -0.02 1.32 16 34 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.13 5.65 5.65 -2.91 -0.02 5.63 16 Total: -1.00 -82.38 336.13 -1.58 -83.97 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: -1.22 Total: 31.36 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: 3.55 Total: -37.11 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -0.95 Total: -91.10 kcal Atomic # 8 Polarization: -72.36 SS G_CDS: -4.65 Total: -77.02 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 45.44 SS G_CDS: -0.33 Total: 45.11 kcal Total: -82.38 -1.58 -83.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845221126.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.306 kcal (2) G-P(sol) polarization free energy of solvation -82.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds