Wall clock time and date at job start Fri Apr 10 2020 18:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34883 * 117.00149 * 2 1 4 4 O 1.21636 * 119.99524 * 0.02562 * 3 2 1 5 5 C 1.46469 * 120.00173 * 179.97438 * 3 2 1 6 6 C 1.44616 * 123.60916 * 0.03083 * 5 3 2 7 7 C 1.32588 * 113.17274 * 179.69371 * 6 5 3 8 8 C 1.50698 * 124.58554 * 180.23328 * 7 6 5 9 9 S 1.75463 * 110.83011 * 0.26757 * 7 6 5 10 10 C 1.37273 * 123.61403 * 180.23429 * 5 3 2 11 11 N 1.38358 * 124.65760 * 0.02562 * 10 5 3 12 12 C 1.34775 * 119.99720 * 180.28782 * 11 10 5 13 13 O 1.21387 * 119.99834 * 359.97438 * 12 11 10 14 14 C 1.49291 * 120.00002 * 179.97438 * 12 11 10 15 15 O 1.21365 * 120.00367 * 0.02562 * 14 12 11 16 16 N 1.34775 * 120.00006 * 179.97438 * 14 12 11 17 17 C 1.46505 * 120.00199 * 179.97438 * 16 14 12 18 18 C 1.50692 * 109.47308 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00231 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00225 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99624 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00126 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46915 * 60.00565 * 22 20 18 24 24 H 1.48506 * 109.47036 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47363 * 300.00132 * 22 20 18 26 26 H 1.08999 * 109.47581 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47070 * 299.99541 * 1 2 3 28 28 H 1.09000 * 109.47726 * 59.99042 * 1 2 3 29 29 H 1.08002 * 123.41719 * 359.96685 * 6 5 3 30 30 H 1.09003 * 109.47018 * 90.00194 * 8 7 6 31 31 H 1.09000 * 109.47148 * 210.00033 * 8 7 6 32 32 H 1.08998 * 109.46961 * 329.99905 * 8 7 6 33 33 H 0.96995 * 119.99788 * 0.28715 * 11 10 5 34 34 H 0.97004 * 120.00330 * 0.02562 * 16 14 12 35 35 H 1.09001 * 109.47162 * 300.00966 * 17 16 14 36 36 H 1.08999 * 109.47103 * 60.00324 * 17 16 14 37 37 H 0.97001 * 120.00077 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4018 2.2219 0.0005 5 6 3.5270 1.2785 0.0006 6 6 4.3894 0.1176 0.0005 7 6 5.6790 0.4257 -0.0054 8 6 6.7993 -0.5822 -0.0120 9 16 5.9048 2.1657 -0.0036 10 6 4.2260 2.4599 0.0053 11 7 3.6473 3.7165 0.0106 12 6 4.4256 4.8169 0.0091 13 8 5.6343 4.7053 0.0035 14 6 3.8011 6.1729 0.0142 15 8 2.5926 6.2845 0.0202 16 7 4.5794 7.2732 0.0132 17 6 3.9667 8.6039 0.0177 18 6 5.0470 9.6545 0.0149 19 1 6.0862 9.3604 0.0098 20 6 4.7089 10.9912 0.0177 21 7 3.4434 11.3493 0.0233 22 14 6.0482 12.2934 0.0149 23 1 6.8870 12.1382 -1.2006 24 1 5.4270 13.6423 0.0193 25 1 6.8951 12.1351 1.2244 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 4.0205 -0.8975 0.0005 30 1 7.0644 -0.8241 -1.0413 31 1 7.6671 -0.1642 0.4981 32 1 6.4766 -1.4874 0.5024 33 1 2.6814 3.8056 0.0153 34 1 5.5453 7.1841 0.0088 35 1 3.3446 8.7205 -0.8698 36 1 3.3512 8.7176 0.9101 37 1 3.2055 12.2897 0.0257 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845952735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:59 Heat of formation + Delta-G solvation = -149.768198 kcal Electronic energy + Delta-G solvation = -24363.553685 eV Core-core repulsion = 20424.888196 eV Total energy + Delta-G solvation = -3938.665489 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.37530 -41.48845 -40.03996 -38.78081 -37.50247 -36.79011 -35.96061 -34.43263 -32.46691 -29.93663 -29.06277 -27.94628 -26.29569 -25.52743 -24.02118 -22.34819 -21.84693 -21.40250 -19.92215 -19.40556 -18.48035 -18.23334 -17.66699 -17.62925 -17.32556 -17.21383 -16.73347 -16.36116 -15.99454 -15.88167 -15.04961 -14.95632 -14.89777 -14.42529 -14.28823 -14.10979 -14.05042 -13.51219 -13.38066 -13.33246 -13.14685 -13.00593 -12.85907 -12.70825 -12.27201 -11.88024 -11.86833 -11.80395 -11.65322 -11.56910 -10.86655 -10.84759 -10.15675 -9.62013 -9.25344 -8.32798 -6.49683 -0.81164 0.02411 0.21711 0.71374 0.75642 1.11322 1.44388 1.47495 1.55956 1.76339 1.77207 1.99745 2.31654 2.47281 3.02788 3.25530 3.61121 3.79267 4.05670 4.30215 4.31863 4.39799 4.59250 4.70240 4.75052 4.88976 4.92688 5.01914 5.10870 5.12370 5.15510 5.22878 5.41676 5.43514 5.58070 5.74504 6.05126 6.44243 6.56484 6.58565 6.88536 7.23133 8.78770 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.002787 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.442590 B =10042.711905 C =11567.393414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.346 6.346 3 C 0.532 3.468 4 O -0.550 6.550 5 C -0.221 4.221 6 C -0.075 4.075 7 C -0.238 4.238 8 C -0.078 4.078 9 S 0.315 5.685 10 C 0.047 3.953 11 N -0.600 5.600 12 C 0.511 3.489 13 O -0.483 6.483 14 C 0.498 3.502 15 O -0.554 6.554 16 N -0.663 5.663 17 C 0.262 3.738 18 C -0.562 4.562 19 H 0.084 0.916 20 C 0.010 3.990 21 N -0.927 5.927 22 Si 0.984 3.016 23 H -0.263 1.263 24 H -0.284 1.284 25 H -0.263 1.263 26 H 0.140 0.860 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.179 0.821 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.437 0.563 34 H 0.417 0.583 35 H 0.006 0.994 36 H 0.006 0.994 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.830 -28.460 -0.084 28.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.262 6.262 3 C 0.379 3.621 4 O -0.443 6.443 5 C -0.240 4.240 6 C -0.101 4.101 7 C -0.356 4.356 8 C -0.137 4.137 9 S 0.578 5.422 10 C -0.172 4.172 11 N -0.250 5.250 12 C 0.293 3.707 13 O -0.358 6.358 14 C 0.277 3.723 15 O -0.433 6.433 16 N -0.313 5.313 17 C 0.141 3.859 18 C -0.600 4.600 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.565 5.565 22 Si 0.807 3.193 23 H -0.187 1.187 24 H -0.209 1.209 25 H -0.187 1.187 26 H 0.158 0.842 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.196 0.804 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.282 0.718 34 H 0.254 0.746 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.698 -27.007 -0.085 27.602 hybrid contribution -1.915 0.410 0.001 1.959 sum 3.783 -26.596 -0.085 26.864 Atomic orbital electron populations 1.23610 0.74298 1.06039 1.02519 1.86557 1.25073 1.30686 1.83882 1.20454 0.88210 0.81740 0.71725 1.90783 1.67302 1.36909 1.49332 1.19196 0.90670 0.92257 1.21868 1.20956 0.90459 0.98241 1.00458 1.25235 0.99696 1.00029 1.10594 1.20445 0.93496 0.95626 1.04102 1.84262 0.92619 0.97810 1.67526 1.22518 1.02865 0.87064 1.04750 1.42878 1.13434 1.01806 1.66854 1.20465 0.86866 0.86066 0.77332 1.90655 1.13165 1.85725 1.46234 1.19753 0.87078 0.85569 0.79879 1.90776 1.14812 1.87054 1.50699 1.46116 1.11339 1.05678 1.68199 1.18896 0.94194 0.77090 0.95744 1.21527 0.93544 0.91146 1.53784 0.89812 1.25994 0.98354 1.01111 0.93604 1.70103 1.18624 1.18342 1.49382 0.85213 0.78010 0.76563 0.79514 1.18720 1.20913 1.18731 0.84213 0.92124 0.92131 0.80371 0.89378 0.90437 0.88605 0.71761 0.74573 0.97599 0.97587 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.57 113.37 1.20 1.62 16 2 O -0.35 -7.18 10.29 -57.97 -0.60 -7.78 16 3 C 0.53 14.25 7.91 69.97 0.55 14.81 16 4 O -0.55 -18.08 14.24 19.39 0.28 -17.80 16 5 C -0.22 -5.48 6.00 -19.73 -0.12 -5.59 16 6 C -0.07 -1.31 9.97 22.74 0.23 -1.08 16 7 C -0.24 -3.78 6.43 24.53 0.16 -3.62 16 8 C -0.08 -0.66 10.34 71.24 0.74 0.08 16 9 S 0.31 6.91 19.92 -56.49 -1.13 5.79 16 10 C 0.05 1.30 6.97 83.44 0.58 1.88 16 11 N -0.60 -19.64 5.31 -310.50 -1.65 -21.29 16 12 C 0.51 17.88 7.84 87.22 0.68 18.57 16 13 O -0.48 -16.05 13.89 -3.36 -0.05 -16.10 16 14 C 0.50 20.95 7.88 87.22 0.69 21.64 16 15 O -0.55 -26.79 16.47 -3.29 -0.05 -26.85 16 16 N -0.66 -28.90 5.54 -468.31 -2.60 -31.50 16 17 C 0.26 14.03 5.43 85.63 0.46 14.50 16 18 C -0.56 -30.16 9.28 25.60 0.24 -29.93 16 19 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 20 C 0.01 0.53 5.46 84.66 0.46 1.00 16 21 N -0.93 -54.54 13.29 21.45 0.28 -54.25 16 22 Si 0.98 41.81 29.54 68.60 2.03 43.84 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 24 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 26 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.18 2.16 8.06 -2.91 -0.02 2.13 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.44 15.45 5.64 -92.71 -0.52 14.92 16 34 H 0.42 16.05 7.79 -92.71 -0.72 15.33 16 35 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 37 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -69.70 346.41 2.30 -67.41 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -0.10 Total: 24.68 kcal Atomic # 6 Polarization: 27.99 SS G_CDS: 5.87 Total: 33.87 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -3.96 Total: -107.04 kcal Atomic # 8 Polarization: -68.11 SS G_CDS: -0.42 Total: -68.53 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 6.91 SS G_CDS: -1.13 Total: 5.79 kcal Total: -69.70 2.30 -67.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845952735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.363 kcal (2) G-P(sol) polarization free energy of solvation -69.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds