Wall clock time and date at job start Fri Apr 10 2020 18:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47046 * 2 1 4 4 C 1.50700 * 109.47159 * 239.99720 * 2 1 3 5 5 H 1.08000 * 119.99870 * 274.99955 * 4 2 1 6 6 C 1.37883 * 119.99786 * 95.00329 * 4 2 1 7 7 N 1.31515 * 119.99541 * 184.91210 * 6 4 2 8 8 Si 1.86794 * 120.00284 * 4.91181 * 6 4 2 9 9 H 1.48503 * 109.47151 * 84.83726 * 8 6 4 10 10 H 1.48494 * 109.47360 * 204.83939 * 8 6 4 11 11 H 1.48504 * 109.47051 * 324.84103 * 8 6 4 12 12 N 1.46503 * 109.46926 * 119.99632 * 2 1 3 13 13 C 1.46488 * 119.99874 * 60.00259 * 12 2 1 14 14 S 1.65600 * 119.99832 * 240.00064 * 12 2 1 15 15 O 1.42106 * 106.40353 * 336.46295 * 14 12 2 16 16 O 1.42094 * 106.40310 * 203.54170 * 14 12 2 17 17 N 1.65603 * 107.21837 * 90.00051 * 14 12 2 18 18 C 1.46493 * 119.99800 * 64.99828 * 17 14 12 19 19 C 1.52998 * 109.47252 * 164.99813 * 18 17 14 20 20 S 1.82845 * 110.31135 * 57.20247 * 19 18 17 21 21 C 1.83110 * 99.46695 * 217.18096 * 20 19 18 22 22 C 1.54486 * 105.04015 * 44.17858 * 21 20 19 23 23 S 1.82121 * 106.98765 * 313.67742 * 22 21 20 24 24 H 1.08995 * 109.47280 * 294.98176 * 1 2 3 25 25 H 1.09005 * 109.46957 * 54.98270 * 1 2 3 26 26 H 1.08998 * 109.47061 * 174.98059 * 1 2 3 27 27 H 0.97000 * 119.99561 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47505 * 269.99952 * 13 12 2 29 29 H 1.08998 * 109.47730 * 29.99962 * 13 12 2 30 30 H 1.09007 * 109.47276 * 149.99885 * 13 12 2 31 31 H 0.97003 * 119.99973 * 244.99974 * 17 14 12 32 32 H 1.09004 * 109.47509 * 44.99996 * 18 17 14 33 33 H 1.09001 * 109.47617 * 285.00384 * 18 17 14 34 34 H 1.09001 * 110.28028 * 179.30000 * 19 18 17 35 35 H 1.09003 * 110.26320 * 285.30814 * 21 20 19 36 36 H 1.09003 * 110.44866 * 163.14515 * 21 20 19 37 37 H 1.09005 * 109.96431 * 194.29005 * 22 21 20 38 38 H 1.09007 * 109.98991 * 73.07691 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1355 -1.7855 -1.2289 6 6 2.3604 0.0121 -2.3581 7 7 2.7061 -0.6133 -3.4621 8 14 2.3136 1.8790 -2.3175 9 1 3.5992 2.3949 -1.7823 10 1 2.1058 2.3989 -3.6929 11 1 1.1987 2.3274 -1.4450 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0930 1.4281 14 16 2.9704 0.1143 2.2863 15 8 3.5794 1.1831 1.5748 16 8 3.7118 -0.8786 2.9815 17 7 1.9606 0.8093 3.3998 18 6 1.1509 -0.0349 4.2816 19 6 0.6086 0.8078 5.4377 20 16 -0.3609 2.2184 4.7946 21 6 0.1219 3.4965 6.0138 22 6 1.6500 3.3383 6.1765 23 16 1.9828 1.5586 6.3731 24 1 -0.3633 0.4340 0.9315 25 1 -0.3633 0.5897 -0.8417 26 1 -0.3633 -1.0237 -0.0899 27 1 2.9365 -0.1050 -4.2555 28 1 0.7376 -2.1443 1.9994 29 1 1.5296 -2.5968 0.4710 30 1 2.4629 -2.5817 1.9865 31 1 1.9053 1.7753 3.4680 32 1 1.7668 -0.8421 4.6782 33 1 0.3188 -0.4565 3.7177 34 1 -0.0068 0.1946 6.0961 35 1 -0.3807 3.3200 6.9648 36 1 -0.1182 4.4911 5.6381 37 1 1.9882 3.8799 7.0600 38 1 2.1602 3.7167 5.2906 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851835454.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:13 Heat of formation + Delta-G solvation = -64.608865 kcal Electronic energy + Delta-G solvation = -22666.482592 eV Core-core repulsion = 19309.706712 eV Total energy + Delta-G solvation = -3356.775881 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 326.058 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -36.74109 -36.32830 -35.89187 -35.22202 -33.55372 -32.43403 -29.96266 -29.89614 -25.65726 -25.14217 -24.21348 -23.52848 -20.68369 -18.94134 -17.55735 -17.50125 -17.27962 -16.96649 -16.41311 -15.92188 -15.72254 -14.96752 -14.31233 -14.21217 -14.12733 -14.07377 -13.52953 -13.13810 -13.00242 -12.62723 -12.46753 -12.31635 -12.03459 -11.93655 -11.81652 -11.49223 -11.43768 -11.32250 -11.19153 -11.09403 -10.79306 -10.66013 -10.31431 -10.06809 -9.77357 -9.41199 -9.31278 -8.57859 -8.28397 -8.14389 -8.05020 -6.15082 -4.15442 0.74822 1.13487 1.19716 1.35324 2.24647 3.30715 3.37856 3.45716 3.49557 3.93196 4.04741 4.22126 4.35343 4.40075 4.65325 4.81231 4.95641 4.99814 5.16268 5.17985 5.27424 5.29202 5.64525 5.86434 6.02849 6.15472 6.39096 6.42378 6.60054 6.66815 6.94308 7.12953 7.21887 7.53599 7.69128 8.45264 8.89182 9.46737 10.96811 Molecular weight = 326.06amu Principal moments of inertia in cm(-1) A = 0.019101 B = 0.004564 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.509132 B = 6133.684618 C = 6506.191485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.235 3.765 3 H 0.056 0.944 4 C -0.517 4.517 5 H 0.082 0.918 6 C 0.079 3.921 7 N -0.889 5.889 8 Si 0.866 3.134 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.263 1.263 12 N -0.983 5.983 13 C 0.094 3.906 14 S 2.773 3.227 15 O -0.975 6.975 16 O -0.991 6.991 17 N -1.125 6.125 18 C 0.150 3.850 19 C -0.024 4.024 20 S -0.226 6.226 21 C -0.088 4.088 22 C -0.092 4.092 23 S -0.233 6.233 24 H 0.026 0.974 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.267 0.733 28 H 0.036 0.964 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.413 0.587 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.102 0.898 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.755 6.164 20.810 23.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.132 3.868 3 H 0.074 0.926 4 C -0.557 4.557 5 H 0.100 0.900 6 C -0.126 4.126 7 N -0.526 5.526 8 Si 0.693 3.307 9 H -0.190 1.190 10 H -0.213 1.213 11 H -0.188 1.188 12 N -0.826 5.826 13 C -0.053 4.053 14 S 2.783 3.217 15 O -0.959 6.959 16 O -0.974 6.974 17 N -0.885 5.885 18 C 0.020 3.980 19 C -0.264 4.264 20 S 0.000 6.000 21 C -0.238 4.238 22 C -0.243 4.243 23 S -0.008 6.008 24 H 0.045 0.955 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.249 0.751 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.153 0.847 35 H 0.120 0.880 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.603 5.588 20.278 22.047 hybrid contribution -0.717 1.881 0.307 2.036 sum -7.320 7.469 20.585 23.090 Atomic orbital electron populations 1.22222 0.98227 1.01113 0.98923 1.19096 0.91205 0.93208 0.83329 0.92620 1.21141 1.44155 0.95943 0.94433 0.89987 1.24985 0.93845 0.98438 0.95297 1.69888 1.44958 1.36061 1.01707 0.87021 0.80222 0.86362 0.77143 1.18951 1.21288 1.18804 1.57905 1.69963 1.19846 1.34853 1.21353 0.98696 0.82338 1.02886 1.02248 0.73756 0.73258 0.72487 1.93604 1.74225 1.56183 1.71878 1.93526 1.69070 1.60523 1.74319 1.56270 1.62210 1.17454 1.52565 1.20977 0.95679 0.92264 0.89115 1.26046 0.97780 1.00692 1.01890 1.88053 1.63430 1.06817 1.41677 1.24543 0.96077 1.01578 1.01588 1.24443 0.97050 0.95044 1.07759 1.87425 1.40606 1.03702 1.69037 0.95456 0.92849 0.92924 0.92356 0.94579 0.89660 0.91579 0.75150 0.88403 0.89874 0.84679 0.87951 0.85532 0.86049 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.10 37.16 0.34 -2.53 16 2 C 0.23 5.41 2.28 -69.08 -0.16 5.25 16 3 H 0.06 1.37 4.06 -51.93 -0.21 1.16 16 4 C -0.52 -14.07 8.72 -34.44 -0.30 -14.37 16 5 H 0.08 2.37 6.82 -52.49 -0.36 2.01 16 6 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 7 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 8 Si 0.87 21.85 26.99 -169.99 -4.59 17.26 16 9 H -0.26 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.26 -6.21 6.82 56.52 0.39 -5.83 16 12 N -0.98 -19.67 3.12 -115.85 -0.36 -20.04 16 13 C 0.09 1.59 9.81 59.84 0.59 2.17 16 14 S 2.77 53.84 6.14 -107.50 -0.66 53.18 16 15 O -0.97 -22.69 16.70 -57.17 -0.95 -23.65 16 16 O -0.99 -20.47 16.21 -57.17 -0.93 -21.40 16 17 N -1.12 -16.31 5.49 -10.62 -0.06 -16.37 16 18 C 0.15 1.73 5.99 -4.05 -0.02 1.70 16 19 C -0.02 -0.23 3.88 37.16 0.14 -0.09 16 20 S -0.23 -2.21 21.16 -104.32 -2.21 -4.42 16 21 C -0.09 -0.56 7.05 37.94 0.27 -0.29 16 22 C -0.09 -0.66 6.85 37.94 0.26 -0.40 16 23 S -0.23 -2.37 21.76 -104.32 -2.27 -4.64 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.05 0.99 7.84 -51.93 -0.41 0.58 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.56 6.56 -51.93 -0.34 1.22 16 30 H 0.07 1.08 7.02 -51.92 -0.36 0.71 16 31 H 0.41 5.67 7.55 -34.47 -0.26 5.41 16 32 H 0.10 1.11 7.75 -51.93 -0.40 0.71 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.14 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 LS Contribution 340.91 15.07 5.14 5.14 Total: -1.00 -34.13 340.91 -10.40 -44.53 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.30 Total: 2.74 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 1.02 Total: -6.41 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 0.35 Total: -62.32 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -1.88 Total: -45.04 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.59 Total: 17.26 kcal Atomic # 16 Polarization: 49.25 SS G_CDS: -5.14 Total: 44.11 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.13 -10.40 -44.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851835454.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.079 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds