Wall clock time and date at job start Fri Apr 10 2020 18:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46496 * 119.99920 * 2 1 4 4 S 1.65605 * 119.99845 * 179.97438 * 2 1 3 5 5 O 1.42102 * 106.40420 * 336.46360 * 4 2 1 6 6 O 1.42097 * 106.40123 * 203.54147 * 4 2 1 7 7 N 1.65601 * 107.21440 * 90.00385 * 4 2 1 8 8 C 1.36930 * 120.00267 * 89.99919 * 7 4 2 9 9 H 1.07999 * 120.00046 * 318.33822 * 8 7 4 10 10 C 1.38818 * 119.99947 * 138.33508 * 8 7 4 11 11 N 1.31617 * 120.00106 * 340.90813 * 10 8 7 12 12 Si 1.86801 * 119.99858 * 160.90256 * 10 8 7 13 13 H 1.48498 * 109.47044 * 59.99787 * 12 10 8 14 14 H 1.48495 * 109.47323 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47172 * 300.00348 * 12 10 8 16 16 C 1.46504 * 119.99944 * 269.99781 * 7 4 2 17 17 C 1.52995 * 109.47146 * 97.57028 * 16 7 4 18 18 C 1.53000 * 109.47204 * 180.02562 * 17 16 7 19 19 S 1.82847 * 110.31433 * 292.19970 * 18 17 16 20 20 C 1.83104 * 99.46880 * 217.17748 * 19 18 17 21 21 C 1.54496 * 105.03931 * 44.18423 * 20 19 18 22 22 S 1.82125 * 106.98309 * 313.67472 * 21 20 19 23 23 H 1.09004 * 109.46986 * 270.00248 * 1 2 3 24 24 H 1.09001 * 109.46803 * 30.00257 * 1 2 3 25 25 H 1.08997 * 109.47027 * 150.00472 * 1 2 3 26 26 H 1.09006 * 109.46625 * 269.99520 * 3 2 1 27 27 H 1.08997 * 109.47713 * 29.99878 * 3 2 1 28 28 H 1.09003 * 109.47339 * 150.00102 * 3 2 1 29 29 H 0.96997 * 119.99564 * 180.02562 * 11 10 8 30 30 H 1.08996 * 109.47012 * 217.57508 * 16 7 4 31 31 H 1.09009 * 109.46995 * 337.57416 * 16 7 4 32 32 H 1.08996 * 109.47557 * 300.00146 * 17 16 7 33 33 H 1.09006 * 109.47337 * 60.00142 * 17 16 7 34 34 H 1.08996 * 110.27900 * 54.30443 * 18 17 16 35 35 H 1.09005 * 110.26942 * 285.31145 * 20 19 18 36 36 H 1.08999 * 110.44687 * 163.14498 * 20 19 18 37 37 H 1.09001 * 109.96116 * 194.29200 * 21 20 19 38 38 H 1.09000 * 109.98782 * 73.07177 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2931 -1.4342 0.0006 5 8 1.4114 -2.4064 0.5454 6 8 3.5759 -1.1566 0.5450 7 7 2.5382 -1.8593 -1.5810 8 6 3.6665 -1.4422 -2.2351 9 1 4.0276 -0.4334 -2.0995 10 6 4.3463 -2.3159 -3.0727 11 7 4.1568 -3.6138 -2.9632 12 14 5.5299 -1.6497 -4.3551 13 1 6.6100 -0.8847 -3.6818 14 1 6.1226 -2.7789 -5.1158 15 1 4.7975 -0.7556 -5.2876 16 6 1.5478 -2.6817 -2.2804 17 6 0.6268 -1.7801 -3.1048 18 6 -0.4078 -2.6389 -3.8347 19 16 0.4044 -3.6588 -5.1166 20 6 -0.8845 -3.5926 -6.4155 21 6 -1.3303 -2.1141 -6.4630 22 16 -1.5844 -1.5796 -4.7406 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5137 26 1 2.3792 1.5833 -1.0278 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1384 0.5138 29 1 4.6321 -4.2243 -3.5482 30 1 2.0586 -3.3814 -2.9419 31 1 0.9563 -3.2363 -1.5518 32 1 0.1161 -1.0804 -2.4433 33 1 1.2183 -1.2255 -3.8334 34 1 -0.9390 -3.2743 -3.1260 35 1 -1.7246 -4.2332 -6.1469 36 1 -0.4712 -3.8947 -7.3778 37 1 -2.2618 -2.0241 -7.0218 38 1 -0.5558 -1.5063 -6.9307 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853698095.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:18 Heat of formation + Delta-G solvation = -60.159042 kcal Electronic energy + Delta-G solvation = -22902.277142 eV Core-core repulsion = 19545.694221 eV Total energy + Delta-G solvation = -3356.582922 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 326.058 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -36.36618 -36.03401 -35.49043 -34.63521 -33.33106 -32.71491 -30.91344 -27.67436 -26.15094 -24.18944 -23.89354 -23.66086 -21.22990 -18.50520 -17.50188 -17.12803 -16.62281 -16.36873 -16.02986 -15.38011 -15.27453 -14.69302 -14.44260 -14.11850 -13.89514 -13.74147 -13.18654 -13.00940 -12.60308 -12.45795 -12.31542 -12.21244 -11.87197 -11.79519 -11.53651 -11.13049 -11.08892 -10.95062 -10.84713 -10.81832 -10.75686 -10.73803 -10.48929 -10.27208 -9.88296 -9.42440 -9.01386 -8.49814 -7.87740 -7.67927 -7.62048 -6.22210 -3.98672 1.27859 1.69017 1.70385 1.86727 2.77110 3.26022 3.30601 3.32622 3.95299 4.29843 4.35555 4.61275 4.71180 5.00205 5.09161 5.13352 5.29904 5.32892 5.35096 5.41567 5.49879 5.68752 5.77495 5.88981 6.00249 6.05478 6.12582 6.18590 6.35745 6.44378 6.74123 7.09837 7.23922 7.40935 7.76412 8.44200 9.05420 9.43518 10.81137 Molecular weight = 326.06amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.006455 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.811843 B = 4336.881631 C = 5818.221386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -1.019 6.019 3 C 0.094 3.906 4 S 2.736 3.264 5 O -1.016 7.016 6 O -0.986 6.986 7 N -0.842 5.842 8 C -0.298 4.298 9 H 0.085 0.915 10 C 0.050 3.950 11 N -0.853 5.853 12 Si 0.910 3.090 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.120 3.880 17 C -0.109 4.109 18 C -0.001 4.001 19 S -0.209 6.209 20 C -0.101 4.101 21 C -0.081 4.081 22 S -0.268 6.268 23 H 0.046 0.954 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.268 0.732 30 H 0.117 0.883 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.106 4.414 -6.231 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.857 5.857 3 C -0.052 4.052 4 S 2.753 3.247 5 O -0.999 6.999 6 O -0.969 6.969 7 N -0.674 5.674 8 C -0.433 4.433 9 H 0.102 0.898 10 C -0.159 4.159 11 N -0.491 5.491 12 Si 0.737 3.263 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.198 1.198 16 C -0.010 4.010 17 C -0.151 4.151 18 C -0.240 4.240 19 S 0.017 5.983 20 C -0.251 4.251 21 C -0.232 4.232 22 S -0.041 6.041 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.135 0.865 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.138 0.862 35 H 0.114 0.886 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.511 4.043 -4.986 12.316 hybrid contribution 0.013 0.177 -1.482 1.492 sum -10.499 4.219 -6.468 13.033 Atomic orbital electron populations 1.21305 0.79918 1.02325 1.00959 1.57993 1.14318 1.22752 1.90671 1.21396 0.96853 0.85347 1.01625 1.04164 0.72440 0.72809 0.75330 1.93439 1.68527 1.58568 1.79372 1.93454 1.40196 1.84947 1.78341 1.52751 1.26003 1.63645 1.25037 1.18846 1.02618 0.96385 1.25492 0.89758 1.25391 0.96304 0.94609 0.99548 1.69935 1.40890 1.01480 1.36806 0.86274 0.80517 0.78559 0.80962 1.19819 1.20992 1.19817 1.21344 0.89078 0.93797 0.96754 1.22245 0.94984 0.97930 0.99977 1.25714 0.99411 0.98818 1.00093 1.88372 1.27448 1.68905 1.13581 1.24543 1.01007 0.97537 1.02022 1.24286 1.06036 0.97155 0.95723 1.87008 1.55110 1.57859 1.04156 0.93496 0.91811 0.91558 0.92975 0.92141 0.90427 0.92177 0.86516 0.92228 0.91226 0.89140 0.86158 0.88552 0.86169 0.86889 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.52 9.86 59.85 0.59 2.11 16 2 N -1.02 -18.59 3.64 -129.20 -0.47 -19.06 16 3 C 0.09 1.47 10.66 59.84 0.64 2.10 16 4 S 2.74 63.96 6.03 -107.50 -0.65 63.32 16 5 O -1.02 -25.20 15.75 -57.17 -0.90 -26.10 16 6 O -0.99 -26.04 15.95 -57.17 -0.91 -26.95 16 7 N -0.84 -20.26 2.85 -59.91 -0.17 -20.43 16 8 C -0.30 -7.62 8.79 -15.06 -0.13 -7.76 16 9 H 0.08 2.10 7.90 -52.49 -0.41 1.68 16 10 C 0.05 1.29 5.05 -17.43 -0.09 1.21 16 11 N -0.85 -22.91 11.53 55.49 0.64 -22.27 16 12 Si 0.91 20.13 29.59 -169.99 -5.03 15.10 16 13 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 15 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 16 C 0.12 2.65 5.20 -4.04 -0.02 2.63 16 17 C -0.11 -1.99 5.04 -26.73 -0.13 -2.13 16 18 C 0.00 -0.01 3.54 37.16 0.13 0.12 16 19 S -0.21 -3.32 21.35 -104.32 -2.23 -5.55 16 20 C -0.10 -1.07 7.05 37.94 0.27 -0.81 16 21 C -0.08 -0.85 6.85 37.94 0.26 -0.59 16 22 S -0.27 -3.64 22.30 -104.32 -2.33 -5.96 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.78 8.07 -51.93 -0.42 0.36 16 25 H 0.07 1.02 6.48 -51.93 -0.34 0.69 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.74 8.07 -51.93 -0.42 0.33 16 28 H 0.08 1.30 7.02 -51.93 -0.36 0.94 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.12 2.82 4.89 -51.93 -0.25 2.56 16 31 H 0.06 1.31 6.87 -51.92 -0.36 0.96 16 32 H 0.07 1.19 6.32 -51.93 -0.33 0.86 16 33 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 34 H 0.12 1.82 8.14 -51.93 -0.42 1.40 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 341.41 15.07 5.15 5.15 Total: -1.00 -31.56 341.41 -10.80 -42.36 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.41 Total: 3.50 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 1.51 Total: -3.11 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: 0.00 Total: -61.75 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -1.81 Total: -53.05 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Atomic # 16 Polarization: 57.01 SS G_CDS: -5.20 Total: 51.80 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.56 -10.80 -42.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853698095.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.802 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds