Wall clock time and date at job start Fri Apr 10 2020 18:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46496 * 119.99920 * 2 1 4 4 S 1.65605 * 119.99845 * 179.97438 * 2 1 3 5 5 O 1.42102 * 106.40420 * 336.46360 * 4 2 1 6 6 O 1.42097 * 106.40123 * 203.54147 * 4 2 1 7 7 N 1.65601 * 107.21440 * 90.00385 * 4 2 1 8 8 C 1.36930 * 120.00267 * 89.99919 * 7 4 2 9 9 H 1.07999 * 120.00046 * 318.33822 * 8 7 4 10 10 C 1.38818 * 119.99947 * 138.33508 * 8 7 4 11 11 N 1.31617 * 120.00106 * 340.90813 * 10 8 7 12 12 Si 1.86801 * 119.99858 * 160.90256 * 10 8 7 13 13 H 1.48498 * 109.47044 * 59.99787 * 12 10 8 14 14 H 1.48495 * 109.47323 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47172 * 300.00348 * 12 10 8 16 16 C 1.46504 * 119.99944 * 269.99781 * 7 4 2 17 17 C 1.52995 * 109.47146 * 97.57028 * 16 7 4 18 18 C 1.53000 * 109.47204 * 180.02562 * 17 16 7 19 19 S 1.82847 * 110.31433 * 292.19970 * 18 17 16 20 20 C 1.83104 * 99.46880 * 217.17748 * 19 18 17 21 21 C 1.54496 * 105.03931 * 44.18423 * 20 19 18 22 22 S 1.82125 * 106.98309 * 313.67472 * 21 20 19 23 23 H 1.09004 * 109.46986 * 270.00248 * 1 2 3 24 24 H 1.09001 * 109.46803 * 30.00257 * 1 2 3 25 25 H 1.08997 * 109.47027 * 150.00472 * 1 2 3 26 26 H 1.09006 * 109.46625 * 269.99520 * 3 2 1 27 27 H 1.08997 * 109.47713 * 29.99878 * 3 2 1 28 28 H 1.09003 * 109.47339 * 150.00102 * 3 2 1 29 29 H 0.96997 * 119.99564 * 180.02562 * 11 10 8 30 30 H 1.08996 * 109.47012 * 217.57508 * 16 7 4 31 31 H 1.09009 * 109.46995 * 337.57416 * 16 7 4 32 32 H 1.08996 * 109.47557 * 300.00146 * 17 16 7 33 33 H 1.09006 * 109.47337 * 60.00142 * 17 16 7 34 34 H 1.08996 * 110.27900 * 54.30443 * 18 17 16 35 35 H 1.09005 * 110.26942 * 285.31145 * 20 19 18 36 36 H 1.08999 * 110.44687 * 163.14498 * 20 19 18 37 37 H 1.09001 * 109.96116 * 194.29200 * 21 20 19 38 38 H 1.09000 * 109.98782 * 73.07177 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2931 -1.4342 0.0006 5 8 1.4114 -2.4064 0.5454 6 8 3.5759 -1.1566 0.5450 7 7 2.5382 -1.8593 -1.5810 8 6 3.6665 -1.4422 -2.2351 9 1 4.0276 -0.4334 -2.0995 10 6 4.3463 -2.3159 -3.0727 11 7 4.1568 -3.6138 -2.9632 12 14 5.5299 -1.6497 -4.3551 13 1 6.6100 -0.8847 -3.6818 14 1 6.1226 -2.7789 -5.1158 15 1 4.7975 -0.7556 -5.2876 16 6 1.5478 -2.6817 -2.2804 17 6 0.6268 -1.7801 -3.1048 18 6 -0.4078 -2.6389 -3.8347 19 16 0.4044 -3.6588 -5.1166 20 6 -0.8845 -3.5926 -6.4155 21 6 -1.3303 -2.1141 -6.4630 22 16 -1.5844 -1.5796 -4.7406 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5137 26 1 2.3792 1.5833 -1.0278 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1384 0.5138 29 1 4.6321 -4.2243 -3.5482 30 1 2.0586 -3.3814 -2.9419 31 1 0.9563 -3.2363 -1.5518 32 1 0.1161 -1.0804 -2.4433 33 1 1.2183 -1.2255 -3.8334 34 1 -0.9390 -3.2743 -3.1260 35 1 -1.7246 -4.2332 -6.1469 36 1 -0.4712 -3.8947 -7.3778 37 1 -2.2618 -2.0241 -7.0218 38 1 -0.5558 -1.5063 -6.9307 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853698095.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:17 Heat of formation + Delta-G solvation = -81.170213 kcal Electronic energy + Delta-G solvation = -22903.188255 eV Core-core repulsion = 19545.694221 eV Total energy + Delta-G solvation = -3357.494034 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 326.058 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.18755 -37.89880 -36.91246 -36.57854 -34.61753 -33.95138 -32.71684 -28.92529 -27.81357 -25.81879 -25.30612 -24.62969 -22.79585 -20.33859 -19.21779 -18.54727 -18.31319 -17.83819 -17.33973 -16.93204 -16.46133 -16.32378 -15.86485 -15.47474 -15.42450 -14.98740 -14.66121 -14.47314 -13.98808 -13.82621 -13.54491 -13.42559 -13.31390 -13.24632 -13.17250 -12.99671 -12.76568 -12.58746 -12.54612 -12.50185 -12.33192 -12.24172 -11.98151 -11.88132 -11.44817 -10.88305 -10.58583 -9.92667 -9.58104 -8.91231 -8.84705 -8.15775 -5.97615 -0.09556 0.22606 0.56607 0.86363 1.48962 1.50800 1.57738 1.75406 2.28781 2.50644 2.81652 3.12442 3.49750 3.63792 3.73175 3.95928 3.98492 4.05041 4.29509 4.42322 4.49570 4.53081 4.55833 4.56773 4.69233 4.70787 4.80167 4.92253 4.96788 5.01814 5.15328 5.46768 5.53374 5.73370 5.93802 6.49860 7.12005 7.48864 8.86523 Molecular weight = 326.06amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.006455 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.811843 B = 4336.881631 C = 5818.221386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -1.014 6.014 3 C 0.087 3.913 4 S 2.744 3.256 5 O -1.038 7.038 6 O -1.024 7.024 7 N -0.853 5.853 8 C -0.311 4.311 9 H 0.086 0.914 10 C 0.008 3.992 11 N -0.885 5.885 12 Si 0.967 3.033 13 H -0.271 1.271 14 H -0.285 1.285 15 H -0.260 1.260 16 C 0.121 3.879 17 C -0.092 4.092 18 C 0.005 3.995 19 S -0.289 6.289 20 C -0.076 4.076 21 C -0.073 4.073 22 S -0.271 6.271 23 H 0.061 0.939 24 H 0.100 0.900 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.267 0.733 30 H 0.097 0.903 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.053 6.152 -8.070 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.856 5.856 3 C -0.058 4.058 4 S 2.761 3.239 5 O -1.021 7.021 6 O -1.008 7.008 7 N -0.686 5.686 8 C -0.446 4.446 9 H 0.104 0.896 10 C -0.198 4.198 11 N -0.524 5.524 12 Si 0.791 3.209 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.185 1.185 16 C -0.009 4.009 17 C -0.134 4.134 18 C -0.234 4.234 19 S -0.064 6.064 20 C -0.225 4.225 21 C -0.223 4.223 22 S -0.045 6.045 23 H 0.080 0.920 24 H 0.118 0.882 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.467 5.783 -6.829 15.347 hybrid contribution 0.501 -0.325 -0.910 1.088 sum -11.966 5.459 -7.739 15.260 Atomic orbital electron populations 1.21607 0.77570 1.03702 1.02433 1.57592 1.15733 1.21868 1.90368 1.21627 0.96681 0.84833 1.02621 1.03570 0.71849 0.73562 0.74963 1.93399 1.68674 1.60286 1.79754 1.93396 1.42510 1.85734 1.79133 1.52832 1.26416 1.64114 1.25208 1.19070 1.03169 0.96550 1.25828 0.89646 1.26142 0.97820 0.94715 1.01124 1.70053 1.42150 1.02516 1.37665 0.85395 0.78638 0.77990 0.78829 1.19649 1.21087 1.18503 1.21290 0.89067 0.94154 0.96346 1.21946 0.94781 0.97413 0.99240 1.25475 0.99024 0.98653 1.00278 1.88612 1.31541 1.69600 1.16607 1.24626 0.99277 0.98163 1.00447 1.24437 1.07937 0.96596 0.93376 1.86962 1.53398 1.57682 1.06455 0.92040 0.88193 0.92425 0.92137 0.87942 0.92193 0.92389 0.88512 0.93292 0.90156 0.90814 0.86246 0.86871 0.83668 0.83163 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.55 9.86 127.77 1.26 3.81 16 2 N -1.01 -35.86 3.64 -562.67 -2.05 -37.91 16 3 C 0.09 2.57 10.66 127.77 1.36 3.93 16 4 S 2.74 130.68 6.03 -56.49 -0.34 130.34 16 5 O -1.04 -52.69 15.75 -128.00 -2.02 -54.71 16 6 O -1.02 -55.58 15.95 -128.00 -2.04 -57.63 16 7 N -0.85 -42.12 2.85 -343.45 -0.98 -43.10 16 8 C -0.31 -16.26 8.79 84.04 0.74 -15.53 16 9 H 0.09 4.33 7.90 -2.91 -0.02 4.30 16 10 C 0.01 0.40 5.05 84.86 0.43 0.83 16 11 N -0.89 -49.14 11.53 21.65 0.25 -48.89 16 12 Si 0.97 41.69 29.59 68.60 2.03 43.72 16 13 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 14 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 15 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 16 C 0.12 5.51 5.20 86.38 0.45 5.96 16 17 C -0.09 -3.37 5.04 30.59 0.15 -3.22 16 18 C 0.01 0.16 3.54 71.98 0.25 0.41 16 19 S -0.29 -9.12 21.35 -49.98 -1.07 -10.18 16 20 C -0.08 -1.38 7.05 72.49 0.51 -0.87 16 21 C -0.07 -1.26 6.85 72.49 0.50 -0.76 16 22 S -0.27 -6.74 22.30 -49.98 -1.11 -7.85 16 23 H 0.06 1.54 8.14 -2.38 -0.02 1.53 16 24 H 0.10 2.08 8.07 -2.39 -0.02 2.06 16 25 H 0.06 1.71 6.48 -2.39 -0.02 1.69 16 26 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.10 2.16 8.07 -2.39 -0.02 2.14 16 28 H 0.06 1.98 7.02 -2.39 -0.02 1.97 16 29 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 30 H 0.10 4.89 4.89 -2.39 -0.01 4.88 16 31 H 0.05 2.27 6.87 -2.38 -0.02 2.25 16 32 H 0.08 2.70 6.32 -2.39 -0.02 2.69 16 33 H 0.07 2.93 8.14 -2.38 -0.02 2.92 16 34 H 0.12 3.65 8.14 -2.39 -0.02 3.63 16 35 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.15 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -71.10 341.41 -0.62 -71.72 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 1.06 Total: 19.93 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 5.65 Total: -5.43 kcal Atomic # 7 Polarization: -127.12 SS G_CDS: -2.78 Total: -129.90 kcal Atomic # 8 Polarization: -108.28 SS G_CDS: -4.06 Total: -112.34 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: 114.82 SS G_CDS: -2.52 Total: 112.30 kcal Total: -71.10 -0.62 -71.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853698095.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.454 kcal (2) G-P(sol) polarization free energy of solvation -71.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds