Wall clock time and date at job start Fri Apr 10 2020 18:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.38668 * 120.41604 * 90.00491 * 3 2 1 5 5 C 1.38635 * 118.42061 * 180.02562 * 4 3 2 6 6 C 1.38222 * 119.15671 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.61496 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47243 * 125.00677 * 7 6 5 9 9 O 1.21284 * 119.99607 * 359.97438 * 8 7 6 10 10 N 1.34767 * 120.00304 * 180.02562 * 8 7 6 11 11 S 1.65608 * 120.00029 * 179.97438 * 10 8 7 12 12 O 1.42096 * 104.27890 * 181.07015 * 11 10 8 13 13 O 1.42098 * 104.27482 * 308.92460 * 11 10 8 14 14 C 1.81398 * 104.45100 * 64.99870 * 11 10 8 15 15 C 1.52995 * 109.47037 * 180.02562 * 14 11 10 16 16 C 1.50710 * 109.46877 * 179.97438 * 15 14 11 17 17 H 1.07999 * 119.99993 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99888 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99934 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 119.99775 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47230 * 90.00064 * 20 18 16 22 22 H 1.48505 * 109.47073 * 209.99767 * 20 18 16 23 23 H 1.48502 * 109.47523 * 329.99916 * 20 18 16 24 24 N 1.31852 * 120.76923 * 0.02562 * 6 5 4 25 25 C 1.31890 * 121.72233 * 359.70023 * 24 6 5 26 26 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 28 28 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 29 29 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 30 30 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 31 31 H 1.08000 * 120.79259 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.42320 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47495 * 245.00228 * 7 6 5 34 34 H 1.08995 * 109.47793 * 5.00270 * 7 6 5 35 35 H 0.96997 * 120.00215 * 359.97438 * 10 8 7 36 36 H 1.08999 * 109.46766 * 300.00350 * 14 11 10 37 37 H 1.09001 * 109.46946 * 59.99910 * 14 11 10 38 38 H 1.08999 * 109.47072 * 299.99366 * 15 14 11 39 39 H 1.08993 * 109.47234 * 60.00128 * 15 14 11 40 40 H 0.97000 * 119.99547 * 179.97438 * 19 18 16 41 41 H 1.08003 * 119.61630 * 180.31786 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2664 2.0828 1.1958 5 6 2.7277 3.3892 1.1476 6 6 2.9379 3.9842 -0.0822 7 6 3.4397 5.4037 -0.1467 8 6 4.6926 5.4561 -0.9827 9 8 5.1347 4.4406 -1.4769 10 7 5.3222 6.6312 -1.1802 11 16 6.6993 6.6886 -2.0983 12 8 7.0868 8.0553 -2.0638 13 8 7.5310 5.6773 -1.5462 14 6 6.1524 6.2239 -3.7642 15 6 7.3495 6.2396 -4.7168 16 6 6.8952 5.8529 -6.1008 17 1 5.8565 5.6197 -6.2827 18 6 7.8055 5.7977 -7.1349 19 7 9.0701 6.0831 -6.9137 20 14 7.2423 5.3192 -8.8504 21 1 6.8417 6.5382 -9.5980 22 1 8.3541 4.6428 -9.5658 23 1 6.0833 4.3960 -8.7514 24 7 2.7045 3.3241 -1.1996 25 6 2.2705 2.0787 -1.1916 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0935 1.5922 2.1423 32 1 2.9203 3.9352 2.0592 33 1 2.6764 6.0389 -0.5961 34 1 3.6599 5.7574 0.8604 35 1 4.9689 7.4433 -0.7846 36 1 5.7215 5.2230 -3.7391 37 1 5.4019 6.9340 -4.1115 38 1 7.7807 7.2403 -4.7420 39 1 8.0996 5.5293 -4.3694 40 1 9.7106 6.0440 -7.6412 41 1 2.0953 1.5685 -2.1272 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892926712.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:26 Heat of formation + Delta-G solvation = -92.274407 kcal Electronic energy + Delta-G solvation = -24933.439093 eV Core-core repulsion = 21133.099817 eV Total energy + Delta-G solvation = -3800.339276 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.81439 -39.61741 -36.65576 -35.57213 -35.26011 -34.37168 -33.84231 -32.54163 -31.64120 -31.12836 -28.16483 -25.57721 -24.20878 -23.90170 -22.03820 -21.57005 -21.03894 -19.31623 -17.94506 -17.52276 -16.93397 -16.54464 -16.32117 -15.80380 -15.59162 -15.08735 -15.02347 -14.56146 -14.49007 -14.20987 -14.15644 -13.47877 -13.40270 -13.25012 -13.00245 -12.58800 -12.46856 -12.28197 -12.16080 -11.74893 -11.67724 -11.64223 -11.56786 -11.32706 -11.04373 -10.95148 -10.77708 -10.38982 -10.31760 -10.19503 -9.95857 -9.66351 -9.50274 -9.13660 -8.99810 -8.45834 -6.08206 -4.13163 0.54484 0.87579 1.12353 2.19426 2.77678 3.30015 3.35927 3.39957 3.55945 3.93218 4.06984 4.29230 4.38851 4.41402 4.48241 4.60210 4.68021 4.74592 4.90993 4.97377 5.00885 5.01914 5.10877 5.18577 5.27173 5.36762 5.52642 5.54464 5.65422 5.66944 5.80434 5.82769 5.85920 6.06131 6.48073 6.53337 6.70744 7.33353 7.40038 7.57380 7.85494 7.87138 8.21623 8.89974 9.51103 11.03032 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.012342 B = 0.003167 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.131509 B = 8839.736072 C =10668.732962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.136 4.136 4 C -0.075 4.075 5 C -0.161 4.161 6 C 0.131 3.869 7 C -0.092 4.092 8 C 0.536 3.464 9 O -0.470 6.470 10 N -1.061 6.061 11 S 2.567 3.433 12 O -0.957 6.957 13 O -0.940 6.940 14 C -0.574 4.574 15 C 0.030 3.970 16 C -0.517 4.517 17 H 0.062 0.938 18 C 0.057 3.943 19 N -0.892 5.892 20 Si 0.901 3.099 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.272 1.272 24 N -0.453 5.453 25 C 0.110 3.890 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.428 0.572 36 H 0.132 0.868 37 H 0.121 0.879 38 H 0.034 0.966 39 H 0.035 0.965 40 H 0.265 0.735 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.089 -5.565 18.935 27.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.138 4.138 4 C -0.101 4.101 5 C -0.181 4.181 6 C -0.008 4.008 7 C -0.134 4.134 8 C 0.320 3.680 9 O -0.338 6.338 10 N -0.822 5.822 11 S 2.667 3.333 12 O -0.947 6.947 13 O -0.930 6.930 14 C -0.709 4.709 15 C -0.009 4.009 16 C -0.557 4.557 17 H 0.081 0.919 18 C -0.145 4.145 19 N -0.530 5.530 20 Si 0.728 3.272 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 N -0.161 5.161 25 C -0.048 4.048 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.262 0.738 36 H 0.151 0.849 37 H 0.139 0.861 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -17.585 -5.672 18.081 25.852 hybrid contribution -1.009 -0.302 -0.261 1.085 sum -18.594 -5.974 17.820 26.439 Atomic orbital electron populations 1.21757 0.94534 1.01904 1.02224 1.20482 0.96189 0.91848 1.03384 1.20950 1.00764 0.97788 0.94334 1.21401 0.96437 0.94126 0.98152 1.21886 1.01636 0.96085 0.98511 1.20494 0.96279 0.95015 0.88999 1.20708 0.95923 0.94523 1.02229 1.20233 0.85102 0.82241 0.80376 1.90947 1.64244 1.32478 1.46177 1.55415 1.46729 1.16446 1.63644 1.06643 0.73602 0.74555 0.78471 1.93583 1.79600 1.34221 1.87306 1.93591 1.63183 1.59859 1.76376 1.30321 1.11988 1.11824 1.16783 1.18983 0.89350 0.98965 0.93641 1.20997 0.95162 1.47353 0.92174 0.91929 1.25066 0.94865 0.95111 0.99470 1.69961 1.02013 1.48254 1.32755 0.86447 0.78394 0.78687 0.83636 1.20483 1.21016 1.19689 1.67439 1.09267 1.08804 1.30557 1.22663 0.94289 0.90241 0.97587 0.92183 0.92679 0.92391 0.90451 0.90835 0.84911 0.84705 0.86040 0.86497 0.73783 0.84947 0.86076 0.94813 0.94643 0.92558 0.82738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.89 37.16 0.37 -0.46 16 2 C -0.08 -0.54 6.09 -27.88 -0.17 -0.70 16 3 C -0.14 -1.25 5.15 -104.48 -0.54 -1.79 16 4 C -0.08 -0.63 9.86 -39.28 -0.39 -1.02 16 5 C -0.16 -1.43 9.71 -39.44 -0.38 -1.82 16 6 C 0.13 1.48 5.76 -82.59 -0.48 1.00 16 7 C -0.09 -0.81 6.10 -29.03 -0.18 -0.99 16 8 C 0.54 7.37 7.50 -10.99 -0.08 7.28 16 9 O -0.47 -8.76 13.44 -11.59 -0.16 -8.91 16 10 N -1.06 -13.47 5.60 31.22 0.17 -13.30 16 11 S 2.57 47.74 5.11 -107.50 -0.55 47.19 16 12 O -0.96 -19.18 18.08 -57.54 -1.04 -20.22 16 13 O -0.94 -21.13 17.04 -64.79 -1.10 -22.23 16 14 C -0.57 -11.85 5.82 37.16 0.22 -11.63 16 15 C 0.03 0.79 4.98 -27.88 -0.14 0.65 16 16 C -0.52 -14.81 9.11 -34.43 -0.31 -15.12 16 17 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 20 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 N -0.45 -6.17 9.22 -9.47 -0.09 -6.26 16 25 C 0.11 1.26 10.86 -17.55 -0.19 1.07 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 31 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.14 0.78 7.95 -52.49 -0.42 0.36 16 33 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.12 0.59 7.87 -51.93 -0.41 0.18 16 35 H 0.43 3.39 8.79 -34.47 -0.30 3.09 16 36 H 0.13 2.75 7.19 -51.92 -0.37 2.38 16 37 H 0.12 2.16 8.14 -51.92 -0.42 1.73 16 38 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 366.09 15.07 5.52 5.52 Total: -1.00 -39.99 366.09 -9.59 -49.58 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.69 Total: 0.20 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -2.37 Total: -21.96 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.82 Total: -45.91 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -2.30 Total: -51.37 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 47.74 SS G_CDS: -0.55 Total: 47.19 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -39.99 -9.59 -49.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892926712.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.695 kcal (2) G-P(sol) polarization free energy of solvation -39.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds