Wall clock time and date at job start Fri Apr 10 2020 18:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.38668 * 120.41604 * 90.00491 * 3 2 1 5 5 C 1.38635 * 118.42061 * 180.02562 * 4 3 2 6 6 C 1.38222 * 119.15671 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.61496 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47243 * 125.00677 * 7 6 5 9 9 O 1.21284 * 119.99607 * 359.97438 * 8 7 6 10 10 N 1.34767 * 120.00304 * 180.02562 * 8 7 6 11 11 S 1.65608 * 120.00029 * 179.97438 * 10 8 7 12 12 O 1.42096 * 104.27890 * 181.07015 * 11 10 8 13 13 O 1.42098 * 104.27482 * 308.92460 * 11 10 8 14 14 C 1.81398 * 104.45100 * 64.99870 * 11 10 8 15 15 C 1.52995 * 109.47037 * 180.02562 * 14 11 10 16 16 C 1.50710 * 109.46877 * 179.97438 * 15 14 11 17 17 H 1.07999 * 119.99993 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99888 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99934 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 119.99775 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47230 * 90.00064 * 20 18 16 22 22 H 1.48505 * 109.47073 * 209.99767 * 20 18 16 23 23 H 1.48502 * 109.47523 * 329.99916 * 20 18 16 24 24 N 1.31852 * 120.76923 * 0.02562 * 6 5 4 25 25 C 1.31890 * 121.72233 * 359.70023 * 24 6 5 26 26 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 28 28 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 29 29 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 30 30 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 31 31 H 1.08000 * 120.79259 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.42320 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47495 * 245.00228 * 7 6 5 34 34 H 1.08995 * 109.47793 * 5.00270 * 7 6 5 35 35 H 0.96997 * 120.00215 * 359.97438 * 10 8 7 36 36 H 1.08999 * 109.46766 * 300.00350 * 14 11 10 37 37 H 1.09001 * 109.46946 * 59.99910 * 14 11 10 38 38 H 1.08999 * 109.47072 * 299.99366 * 15 14 11 39 39 H 1.08993 * 109.47234 * 60.00128 * 15 14 11 40 40 H 0.97000 * 119.99547 * 179.97438 * 19 18 16 41 41 H 1.08003 * 119.61630 * 180.31786 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2664 2.0828 1.1958 5 6 2.7277 3.3892 1.1476 6 6 2.9379 3.9842 -0.0822 7 6 3.4397 5.4037 -0.1467 8 6 4.6926 5.4561 -0.9827 9 8 5.1347 4.4406 -1.4769 10 7 5.3222 6.6312 -1.1802 11 16 6.6993 6.6886 -2.0983 12 8 7.0868 8.0553 -2.0638 13 8 7.5310 5.6773 -1.5462 14 6 6.1524 6.2239 -3.7642 15 6 7.3495 6.2396 -4.7168 16 6 6.8952 5.8529 -6.1008 17 1 5.8565 5.6197 -6.2827 18 6 7.8055 5.7977 -7.1349 19 7 9.0701 6.0831 -6.9137 20 14 7.2423 5.3192 -8.8504 21 1 6.8417 6.5382 -9.5980 22 1 8.3541 4.6428 -9.5658 23 1 6.0833 4.3960 -8.7514 24 7 2.7045 3.3241 -1.1996 25 6 2.2705 2.0787 -1.1916 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0935 1.5922 2.1423 32 1 2.9203 3.9352 2.0592 33 1 2.6764 6.0389 -0.5961 34 1 3.6599 5.7574 0.8604 35 1 4.9689 7.4433 -0.7846 36 1 5.7215 5.2230 -3.7391 37 1 5.4019 6.9340 -4.1115 38 1 7.7807 7.2403 -4.7420 39 1 8.0996 5.5293 -4.3694 40 1 9.7106 6.0440 -7.6412 41 1 2.0953 1.5685 -2.1272 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892926712.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:26 Heat of formation + Delta-G solvation = -122.729067 kcal Electronic energy + Delta-G solvation = -24934.759706 eV Core-core repulsion = 21133.099817 eV Total energy + Delta-G solvation = -3801.659889 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.66255 -40.61983 -38.28262 -37.22428 -35.97228 -35.89167 -35.55904 -33.27501 -33.18537 -32.26025 -28.86302 -27.65598 -24.89760 -24.65784 -23.67217 -22.79491 -21.80848 -20.71465 -19.37402 -18.83931 -18.37358 -17.68557 -17.29648 -17.14887 -16.66430 -16.55705 -16.27496 -16.19062 -15.54763 -15.22262 -14.93902 -14.68896 -14.50962 -14.17018 -13.99671 -13.84241 -13.79341 -13.42386 -13.35713 -13.25420 -13.15809 -12.96098 -12.86127 -12.78245 -12.32114 -12.24755 -12.15316 -12.00279 -11.83025 -11.75488 -11.39414 -11.07055 -10.67258 -10.65046 -10.25326 -9.70409 -8.29316 -6.43419 -0.98564 0.15802 0.44009 1.11296 1.37963 1.40742 1.46450 1.52232 2.35495 2.57271 2.79448 3.03762 3.09929 3.23017 3.43576 3.76698 3.87527 3.91623 4.03379 4.04603 4.08872 4.15357 4.34497 4.48122 4.51472 4.54338 4.66234 4.68025 4.80445 4.95539 5.08403 5.09436 5.20389 5.21300 5.22385 5.37559 5.44846 5.64489 5.73559 5.86649 6.02396 6.54605 6.68900 7.13574 7.26399 8.83280 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.012342 B = 0.003167 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.131509 B = 8839.736072 C =10668.732962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.136 4.136 4 C -0.081 4.081 5 C -0.157 4.157 6 C 0.101 3.899 7 C -0.082 4.082 8 C 0.532 3.468 9 O -0.523 6.523 10 N -1.035 6.035 11 S 2.605 3.395 12 O -0.970 6.970 13 O -0.981 6.981 14 C -0.580 4.580 15 C 0.024 3.976 16 C -0.542 4.542 17 H 0.071 0.929 18 C -0.003 4.003 19 N -0.933 5.933 20 Si 0.976 3.024 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.262 1.262 24 N -0.496 5.496 25 C 0.079 3.921 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.163 0.837 32 H 0.171 0.829 33 H 0.153 0.847 34 H 0.166 0.834 35 H 0.452 0.548 36 H 0.128 0.872 37 H 0.149 0.851 38 H 0.016 0.984 39 H 0.003 0.997 40 H 0.269 0.731 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.591 -5.340 20.671 30.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.138 4.138 4 C -0.107 4.107 5 C -0.176 4.176 6 C -0.038 4.038 7 C -0.124 4.124 8 C 0.320 3.680 9 O -0.395 6.395 10 N -0.804 5.804 11 S 2.703 3.297 12 O -0.961 6.961 13 O -0.971 6.971 14 C -0.713 4.713 15 C -0.015 4.015 16 C -0.581 4.581 17 H 0.089 0.911 18 C -0.201 4.201 19 N -0.572 5.572 20 Si 0.799 3.201 21 H -0.190 1.190 22 H -0.205 1.205 23 H -0.186 1.186 24 N -0.204 5.204 25 C -0.079 4.079 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.181 0.819 32 H 0.189 0.811 33 H 0.170 0.830 34 H 0.183 0.817 35 H 0.293 0.707 36 H 0.146 0.854 37 H 0.167 0.833 38 H 0.035 0.965 39 H 0.021 0.979 40 H 0.078 0.922 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -20.110 -5.411 19.814 28.745 hybrid contribution -0.281 -0.387 -0.686 0.836 sum -20.391 -5.798 19.127 28.553 Atomic orbital electron populations 1.21724 0.93702 1.02608 1.01973 1.20533 0.96814 0.90496 1.03927 1.21201 0.99844 0.98736 0.93994 1.21846 0.95601 0.94274 0.98951 1.22305 1.00036 0.96321 0.98937 1.20978 0.97223 0.96152 0.89411 1.20935 0.93384 0.94220 1.03825 1.21283 0.85917 0.81089 0.79760 1.90941 1.65755 1.34351 1.48439 1.54800 1.45146 1.17959 1.62448 1.05182 0.73921 0.73228 0.77368 1.93558 1.80620 1.34607 1.87291 1.93540 1.65510 1.61323 1.76724 1.30234 1.10178 1.12702 1.18151 1.18808 0.90980 0.96863 0.94834 1.21475 0.95775 1.47403 0.93434 0.91070 1.26124 0.94839 0.94800 1.04364 1.70098 1.03415 1.49328 1.34384 0.85283 0.78157 0.78868 0.77771 1.19024 1.20542 1.18647 1.67362 1.10606 1.09955 1.32523 1.22816 0.95854 0.90481 0.98714 0.90993 0.92222 0.93334 0.90764 0.89427 0.81908 0.81108 0.82959 0.81688 0.70670 0.85382 0.83253 0.96533 0.97900 0.92239 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.89 71.98 0.71 -0.71 16 2 C -0.08 -0.96 6.09 29.85 0.18 -0.78 16 3 C -0.14 -2.36 5.15 -19.77 -0.10 -2.47 16 4 C -0.08 -1.15 9.86 22.47 0.22 -0.93 16 5 C -0.16 -2.29 9.71 22.36 0.22 -2.08 16 6 C 0.10 2.08 5.76 42.55 0.25 2.33 16 7 C -0.08 -1.17 6.10 29.10 0.18 -1.00 16 8 C 0.53 13.73 7.50 87.66 0.66 14.39 16 9 O -0.52 -19.65 13.44 13.35 0.18 -19.47 16 10 N -1.03 -24.24 5.60 -173.54 -0.97 -25.22 16 11 S 2.60 97.02 5.11 -56.49 -0.29 96.73 16 12 O -0.97 -38.46 18.08 -127.65 -2.31 -40.77 16 13 O -0.98 -45.18 17.04 -120.71 -2.06 -47.24 16 14 C -0.58 -24.44 5.82 71.98 0.42 -24.02 16 15 C 0.02 1.34 4.98 29.85 0.15 1.49 16 16 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 17 H 0.07 3.93 7.74 -2.91 -0.02 3.91 16 18 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 19 N -0.93 -58.36 13.29 21.45 0.28 -58.08 16 20 Si 0.98 45.04 29.54 68.60 2.03 47.06 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 24 N -0.50 -13.54 9.22 -183.89 -1.70 -15.24 16 25 C 0.08 1.85 10.86 84.67 0.92 2.77 16 26 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 30 H 0.09 0.81 8.10 -2.39 -0.02 0.79 16 31 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 32 H 0.17 1.13 7.95 -2.91 -0.02 1.10 16 33 H 0.15 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.17 0.74 7.87 -2.39 -0.02 0.72 16 35 H 0.45 5.65 8.79 -96.75 -0.85 4.80 16 36 H 0.13 5.52 7.19 -2.39 -0.02 5.50 16 37 H 0.15 5.27 8.14 -2.39 -0.02 5.25 16 38 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 41 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -91.81 366.09 -0.14 -91.95 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.20 Total: 12.52 kcal Atomic # 6 Polarization: -46.76 SS G_CDS: 4.49 Total: -42.26 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -2.38 Total: -98.53 kcal Atomic # 8 Polarization: -103.29 SS G_CDS: -4.19 Total: -107.47 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: 97.02 SS G_CDS: -0.29 Total: 96.73 kcal Total: -91.81 -0.14 -91.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892926712.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.779 kcal (2) G-P(sol) polarization free energy of solvation -91.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds