Wall clock time and date at job start Fri Apr 10 2020 18:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86795 * 119.99928 * 2 1 4 4 H 1.48502 * 109.47360 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47576 * 300.00307 * 3 2 1 6 6 H 1.48506 * 109.46791 * 60.00014 * 3 2 1 7 7 C 1.38945 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00185 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00228 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00425 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99360 * 359.97438 * 10 9 7 12 12 C 1.50690 * 120.00354 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47303 * 179.97438 * 12 10 9 14 14 S 1.65602 * 120.00070 * 164.99922 * 13 12 10 15 15 O 1.42092 * 104.27876 * 308.93108 * 14 13 12 16 16 O 1.42098 * 104.27847 * 181.06838 * 14 13 12 17 17 C 1.81408 * 104.44772 * 65.00290 * 14 13 12 18 18 C 1.52997 * 109.46973 * 180.02562 * 17 14 13 19 19 C 1.52995 * 109.47085 * 179.97438 * 18 17 14 20 20 C 1.50707 * 109.47301 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99792 * 90.00016 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.97953 * 20 19 18 26 26 H 0.96996 * 120.00078 * 0.02562 * 1 2 3 27 27 H 0.96999 * 120.00067 * 359.97438 * 9 7 2 28 28 H 1.09006 * 109.47326 * 59.99592 * 12 10 9 29 29 H 1.09006 * 109.47114 * 299.99921 * 12 10 9 30 30 H 0.97003 * 119.99896 * 344.99591 * 13 12 10 31 31 H 1.08992 * 109.47499 * 60.00005 * 17 14 13 32 32 H 1.08999 * 109.46513 * 299.99674 * 17 14 13 33 33 H 1.08995 * 109.47671 * 59.99598 * 18 17 14 34 34 H 1.09004 * 109.46984 * 299.99614 * 18 17 14 35 35 H 1.09005 * 109.47610 * 59.99944 * 19 18 17 36 36 H 1.09000 * 109.47256 * 299.99285 * 19 18 17 37 37 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 38 38 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 41 41 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8893 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9973 -3.5579 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1959 -5.9764 -0.0027 14 16 1.6810 -7.5061 0.3678 15 8 0.9782 -7.3522 1.5931 16 8 2.8574 -8.2997 0.2927 17 6 0.5368 -7.9357 -0.9727 18 6 -0.0140 -9.3442 -0.7413 19 6 -0.9795 -9.7063 -1.8716 20 6 -1.5216 -11.0939 -1.6440 21 6 -2.6794 -11.2719 -0.9099 22 6 -3.1769 -12.5446 -0.7016 23 6 -2.5171 -13.6394 -1.2279 24 6 -1.3564 -13.4619 -1.9574 25 6 -0.8614 -12.1888 -2.1697 26 1 -0.4850 0.8400 -0.0004 27 1 0.3535 -2.3907 -0.0016 28 1 0.6175 -4.9205 -0.8924 29 1 0.6169 -4.9209 0.8876 30 1 3.1278 -5.8177 -0.2201 31 1 1.0651 -7.9038 -1.9256 32 1 -0.2869 -7.2221 -0.9898 33 1 -0.5424 -9.3758 0.2115 34 1 0.8096 -10.0581 -0.7239 35 1 -0.4515 -9.6747 -2.8247 36 1 -1.8031 -8.9925 -1.8886 37 1 -3.1952 -10.4165 -0.4991 38 1 -4.0812 -12.6837 -0.1277 39 1 -2.9061 -14.6338 -1.0655 40 1 -0.8385 -14.3175 -2.3649 41 1 0.0427 -12.0497 -2.7438 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915615315.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:40 Heat of formation + Delta-G solvation = -99.949485 kcal Electronic energy + Delta-G solvation = -24106.025582 eV Core-core repulsion = 20305.353489 eV Total energy + Delta-G solvation = -3800.672093 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.64026 -38.45760 -37.03136 -35.91885 -35.60344 -34.67216 -33.72718 -31.60452 -31.37311 -31.20365 -27.17458 -27.11094 -24.35377 -22.97092 -22.89604 -21.20247 -19.68231 -19.24030 -18.16127 -17.67765 -17.16883 -16.48260 -16.37002 -15.80261 -15.55539 -15.34898 -15.02868 -14.71942 -14.45690 -14.28661 -13.97099 -13.71969 -13.66329 -13.48018 -12.68787 -12.64157 -12.48850 -12.30847 -12.23723 -12.04057 -11.92174 -11.89971 -11.55343 -11.48376 -11.37124 -11.16369 -11.08846 -10.70656 -10.41435 -10.32512 -9.66014 -9.36407 -9.23989 -9.00932 -8.61988 -8.11011 -6.53035 -3.94587 0.25971 1.02629 1.08224 2.78518 3.09555 3.22119 3.29172 3.44666 3.70424 3.78027 4.08609 4.14569 4.19357 4.45928 4.64169 4.65633 4.70728 4.79066 4.81248 4.84023 4.98533 5.13878 5.18426 5.25188 5.27852 5.38829 5.40545 5.55384 5.66961 5.72412 5.75021 5.78605 5.81833 6.14576 6.20023 6.25672 6.30651 6.68675 7.26383 7.45628 7.92671 8.44885 9.04554 9.38106 9.86841 10.64077 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.024238 B = 0.002094 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.915794 B =13365.958185 C =14040.991872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.553 5.553 10 C 0.434 3.566 11 O -0.588 6.588 12 C 0.103 3.897 13 N -1.101 6.101 14 S 2.616 3.384 15 O -0.956 6.956 16 O -0.960 6.960 17 C -0.635 4.635 18 C -0.106 4.106 19 C -0.074 4.074 20 C -0.085 4.085 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.126 4.126 24 C -0.119 4.119 25 C -0.117 4.117 26 H 0.273 0.727 27 H 0.395 0.605 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.427 0.573 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.146 -22.696 -5.357 24.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.189 5.189 10 C 0.218 3.782 11 O -0.474 6.474 12 C -0.028 4.028 13 N -0.864 5.864 14 S 2.707 3.293 15 O -0.946 6.946 16 O -0.950 6.950 17 C -0.764 4.764 18 C -0.145 4.145 19 C -0.112 4.112 20 C -0.085 4.085 21 C -0.135 4.135 22 C -0.137 4.137 23 C -0.144 4.144 24 C -0.137 4.137 25 C -0.135 4.135 26 H 0.083 0.917 27 H 0.229 0.771 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.265 0.735 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.381 -23.024 -4.558 24.604 hybrid contribution -0.291 1.147 -0.767 1.410 sum -7.672 -21.877 -5.326 23.787 Atomic orbital electron populations 1.69612 1.05982 1.28379 1.49733 1.25311 0.95685 0.99914 0.96882 0.85758 0.79718 0.80820 0.77792 1.19143 1.20662 1.20625 1.19787 0.93523 0.82008 1.47955 0.87628 1.41827 1.09382 1.04525 1.63150 1.19620 0.88368 0.84699 0.85465 1.90516 1.13697 1.86583 1.56586 1.20967 0.91549 0.87616 1.02625 1.55190 1.20108 1.22649 1.88452 1.04782 0.75260 0.72976 0.76252 1.93601 1.76158 1.85000 1.39820 1.93595 1.45277 1.68637 1.87500 1.30707 1.17780 1.06478 1.21430 1.21290 1.00104 0.92605 1.00479 1.20582 0.98966 0.92998 0.98662 1.19929 0.95400 0.95315 0.97853 1.21131 0.96116 0.97502 0.98709 1.21175 1.00008 0.92695 0.99789 1.21171 0.95936 0.98847 0.98436 1.21166 0.96451 0.97146 0.98952 1.21113 0.99912 0.92299 1.00206 0.91690 0.77139 0.90326 0.88686 0.73480 0.84589 0.84638 0.90032 0.90140 0.90334 0.90217 0.85828 0.86030 0.86196 0.86073 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.44 13.05 55.50 0.72 -22.72 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.40 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 8 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.55 -13.31 5.29 -10.97 -0.06 -13.37 16 10 C 0.43 9.70 7.85 -10.99 -0.09 9.61 16 11 O -0.59 -15.21 15.30 5.54 0.08 -15.12 16 12 C 0.10 1.65 6.61 -5.20 -0.03 1.61 16 13 N -1.10 -16.60 5.82 -11.66 -0.07 -16.67 16 14 S 2.62 34.15 5.46 -107.50 -0.59 33.57 16 15 O -0.96 -15.49 17.50 -57.54 -1.01 -16.50 16 16 O -0.96 -15.22 18.08 -57.54 -1.04 -16.26 16 17 C -0.64 -5.35 6.07 37.16 0.23 -5.13 16 18 C -0.11 -0.89 5.20 -26.74 -0.14 -1.03 16 19 C -0.07 -0.54 5.34 -27.88 -0.15 -0.69 16 20 C -0.08 -0.70 5.13 -104.62 -0.54 -1.24 16 21 C -0.12 -0.94 9.70 -39.58 -0.38 -1.33 16 22 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 23 C -0.13 -0.92 10.05 -39.58 -0.40 -1.32 16 24 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 25 C -0.12 -0.94 9.70 -39.58 -0.38 -1.32 16 26 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 27 H 0.39 8.91 7.90 -40.82 -0.32 8.59 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.10 1.42 7.70 -51.93 -0.40 1.02 16 30 H 0.43 6.96 7.67 -34.47 -0.26 6.70 16 31 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.14 0.90 8.14 -51.92 -0.42 0.48 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 36 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 37 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 40 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -35.16 368.21 -9.91 -45.07 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -5.56 Total: 12.23 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -2.92 Total: -11.16 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.60 Total: -52.76 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -1.96 Total: -47.88 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 34.15 SS G_CDS: -0.59 Total: 33.57 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.16 -9.91 -45.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915615315.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.877 kcal (2) G-P(sol) polarization free energy of solvation -35.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds